Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:120738002-121129012

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119 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Rvfs2 11 100363360 to 120996339 20632979 QTL Rift Valley fever susceptibility 2
Tssr112397 11 120748000 to 120748003 3 - TSS region transcription start site region 112397
Tssr106363 11 120762792 to 120762793 1 + TSS region transcription start site region 106363
Hmga1b 11 120762794 to 120764392 1598 + protein coding gene high mobility group AT-hook 1B
Tssr106364 11 120762818 to 120762829 11 + TSS region transcription start site region 106364
Tssr106365 11 120762987 to 120763018 31 + TSS region transcription start site region 106365
Tssr106366 11 120763084 to 120763106 22 + TSS region transcription start site region 106366
Tssr106367 11 120763129 to 120763145 16 + TSS region transcription start site region 106367
Tssr106368 11 120765284 to 120765300 16 + TSS region transcription start site region 106368
Gm11771 11 120765311 to 120767366 2055 + pseudogene predicted gene 11771
Tssr106369 11 120766249 to 120766266 17 + TSS region transcription start site region 106369
Tssr106370 11 120767043 to 120767081 38 + TSS region transcription start site region 106370
Tssr106371 11 120767096 to 120767109 13 + TSS region transcription start site region 106371
Tssr106372 11 120767321 to 120767351 30 + TSS region transcription start site region 106372
Rfng 11 120780746 to 120784207 3461 - protein coding gene RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase
Tssr112398 11 120781826 to 120781841 15 - TSS region transcription start site region 112398
Cpgi4329 11 120783264 to 120785274 2010 CpG island CpG island 4329
Tssr112399 11 120784166 to 120784176 10 - TSS region transcription start site region 112399
Tssr112400 11 120784183 to 120784209 26 - TSS region transcription start site region 112400
Tssr112401 11 120784210 to 120784230 20 - TSS region transcription start site region 112401
Tssr112402 11 120784252 to 120784261 9 - TSS region transcription start site region 112402
Tssr106373 11 120784257 to 120784272 15 + TSS region transcription start site region 106373
Gps1 11 120784272 to 120789102 4830 + protein coding gene G protein pathway suppressor 1
Tssr106374 11 120784308 to 120784345 37 + TSS region transcription start site region 106374
Tssr106375 11 120784441 to 120784453 12 + TSS region transcription start site region 106375
Tssr106376 11 120784498 to 120784570 72 + TSS region transcription start site region 106376
Dus1l 11 120789201 to 120796403 7202 - protein coding gene dihydrouridine synthase 1-like (S. cerevisiae)
Cpgi4330 11 120795693 to 120796659 966 CpG island CpG island 4330
Tssr112403 11 120796369 to 120796405 36 - TSS region transcription start site region 112403
Fasn 11 120805958 to 120824547 18589 - protein coding gene fatty acid synthase
Tssr112404 11 120807856 to 120807859 3 - TSS region transcription start site region 112404
Tssr112405 11 120809156 to 120809176 20 - TSS region transcription start site region 112405
Tssr112406 11 120816209 to 120816233 24 - TSS region transcription start site region 112406
Tssr112407 11 120816404 to 120816424 20 - TSS region transcription start site region 112407
Tssr112408 11 120817149 to 120817163 14 - TSS region transcription start site region 112408
Tssr112409 11 120817178 to 120817193 15 - TSS region transcription start site region 112409
Tssr112410 11 120818585 to 120818597 12 - TSS region transcription start site region 112410
Tssr112411 11 120819161 to 120819182 21 - TSS region transcription start site region 112411
Tssr112412 11 120820291 to 120820310 19 - TSS region transcription start site region 112412
Tssr112413 11 120820616 to 120820636 20 - TSS region transcription start site region 112413
Tssr112414 11 120821130 to 120821138 8 - TSS region transcription start site region 112414
Tssr112415 11 120821198 to 120821209 11 - TSS region transcription start site region 112415
Cpgi4331 11 120823246 to 120825066 1820 CpG island CpG island 4331
Tssr112416 11 120824098 to 120824116 18 - TSS region transcription start site region 112416
Tssr112417 11 120824524 to 120824576 52 - TSS region transcription start site region 112417
Tssr112418 11 120825155 to 120825183 28 - TSS region transcription start site region 112418
Ccdc57 11 120826529 to 120932872 106343 - protein coding gene coiled-coil domain containing 57
Gm11773 11 120831029 to 120834244 3215 + antisense lncRNA gene predicted gene 11773
Tssr112419 11 120852674 to 120852700 26 - TSS region transcription start site region 112419
Tssr112420 11 120856232 to 120856251 19 - TSS region transcription start site region 112420
Tssr112421 11 120866601 to 120866604 3 - TSS region transcription start site region 112421
Tssr112422 11 120866605 to 120866617 12 - TSS region transcription start site region 112422
Tssr112423 11 120866619 to 120866639 20 - TSS region transcription start site region 112423
Tssr112424 11 120866641 to 120866674 33 - TSS region transcription start site region 112424
Tssr112425 11 120882929 to 120882936 7 - TSS region transcription start site region 112425
Tssr112426 11 120903356 to 120903366 10 - TSS region transcription start site region 112426
Tssr112427 11 120903618 to 120903626 8 - TSS region transcription start site region 112427
Cpgi4332 11 120932526 to 120933182 656 CpG island CpG island 4332
Tssr112428 11 120932832 to 120932876 44 - TSS region transcription start site region 112428
A430102A20Rik 11 120933002 to 120934012 1010 + lncRNA gene RIKEN cDNA A430102A20 gene
Tssr112429 11 120938124 to 120938156 32 - TSS region transcription start site region 112429
Tssr106377 11 120939036 to 120939069 33 + TSS region transcription start site region 106377
Tssr3761 11 120941987 to 120941994 7 - TSS region transcription start site region 3761
Cpgi4333 11 120948484 to 120949699 1215 CpG island CpG island 4333
Slc16a3 11 120948484 to 120959000 10516 + protein coding gene solute carrier family 16 (monocarboxylic acid transporters), member 3
Tssr106378 11 120948493 to 120948533 40 + TSS region transcription start site region 106378
Tssr106379 11 120948543 to 120948553 10 + TSS region transcription start site region 106379
Tssr106380 11 120948714 to 120948746 32 + TSS region transcription start site region 106380
Tssr106381 11 120949100 to 120949114 14 + TSS region transcription start site region 106381
Tssr106382 11 120949516 to 120949519 3 + TSS region transcription start site region 106382
Cpgi4334 11 120950667 to 120951180 513 CpG island CpG island 4334
Tssr106383 11 120955324 to 120955360 36 + TSS region transcription start site region 106383
Tssr106384 11 120956535 to 120956547 12 + TSS region transcription start site region 106384
Tssr106385 11 120958010 to 120958017 7 + TSS region transcription start site region 106385
Tssr106386 11 120958217 to 120958236 19 + TSS region transcription start site region 106386
Tssr106387 11 120958392 to 120958426 34 + TSS region transcription start site region 106387
Csnk1d 11 120961749 to 120991330 29581 - protein coding gene casein kinase 1, delta
Gm28192 11 120963844 to 120964764 920 + antisense lncRNA gene predicted gene 28192
Cpgi4335 11 120990141 to 120991777 1636 CpG island CpG island 4335
Tssr106388 11 120990558 to 120990575 17 + TSS region transcription start site region 106388
Tssr112430 11 120991020 to 120991037 17 - TSS region transcription start site region 112430
Tssr112431 11 120991039 to 120991074 35 - TSS region transcription start site region 112431
Tssr112432 11 120991078 to 120991095 17 - TSS region transcription start site region 112432
Tssr112433 11 120991103 to 120991106 3 - TSS region transcription start site region 112433
Tssr112434 11 120991260 to 120991278 18 - TSS region transcription start site region 112434
Tssr112435 11 120991305 to 120991339 34 - TSS region transcription start site region 112435
Tssr106389 11 120991382 to 120991395 13 + TSS region transcription start site region 106389
Tssr106390 11 120991412 to 120991439 27 + TSS region transcription start site region 106390
Gm30062 11 120991438 to 121015421 23983 + lncRNA gene predicted gene, 30062
D11Mit69.2 11 120996133 to 120996262 129 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 69.2
D11Mit69 11 120996173 to 120996339 166 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 69
D11Dcr31 11 120996238 to 120996346 108 DNA segment DNA Segment, Chr 11, Derry C. Roopenian 31
Gm11774 11 121003492 to 121003784 292 - pseudogene predicted gene 11774
Cpgi4336 11 121014858 to 121015084 226 CpG island CpG island 4336
Gm22152 11 121030858 to 121030982 124 + snoRNA gene predicted gene, 22152
Cd7 11 121036747 to 121039418 2671 - protein coding gene CD7 antigen
Gm11775 11 121037695 to 121053417 15722 + antisense lncRNA gene predicted gene 11775
Tssr112436 11 121038306 to 121038311 5 - TSS region transcription start site region 112436
Tssr112437 11 121039381 to 121039392 11 - TSS region transcription start site region 112437
Tssr112438 11 121039400 to 121039463 63 - TSS region transcription start site region 112438
Sectm1b 11 121053458 to 121063569 10111 - protein coding gene secreted and transmembrane 1B
Tssr112439 11 121054425 to 121054444 19 - TSS region transcription start site region 112439
Tssr112440 11 121054875 to 121054910 35 - TSS region transcription start site region 112440
Tssr112441 11 121055056 to 121055067 11 - TSS region transcription start site region 112441
Tssr112442 11 121063301 to 121063319 18 - TSS region transcription start site region 112442
Tssr112443 11 121063526 to 121063531 5 - TSS region transcription start site region 112443
Tssr112444 11 121063543 to 121063574 31 - TSS region transcription start site region 112444
Sectm1a 11 121067407 to 121081220 13813 - protein coding gene secreted and transmembrane 1A
Tssr112445 11 121081129 to 121081144 15 - TSS region transcription start site region 112445
Tssr112446 11 121081158 to 121081165 7 - TSS region transcription start site region 112446
Tssr112447 11 121086482 to 121086512 30 - TSS region transcription start site region 112447
Gm11792 11 121092392 to 121092559 167 - pseudogene predicted gene 11792
Gm11791 11 121096641 to 121097207 566 - lincRNA gene predicted gene 11791
D11Dcr42 11 121100608 to 121100703 95 DNA segment DNA Segment, Chr 11, Derry C. Roopenian 42
D11Dcr43 11 121104069 to 121104164 95 DNA segment DNA Segment, Chr 11, Derry C. Roopenian 43
Gm11793 11 121106147 to 121107127 980 - pseudogene predicted gene 11793
D11Dcr44 11 121114638 to 121114746 108 DNA segment DNA Segment, Chr 11, Derry C. Roopenian 44
Tex19.2 11 121116215 to 121118677 2462 - protein coding gene testis expressed gene 19.2
Tssr112448 11 121118256 to 121118258 2 - TSS region transcription start site region 112448