Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:120596039-121386074

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293 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Rvfs2 11 100363360 to 120996339 20632979 QTL Rift Valley fever susceptibility 2
Alyref 11 120594504 to 120598365 3861 - protein coding gene Aly/REF export factor
Cpgi4314 11 120597292 to 120599175 1883 CpG island CpG island 4314
Tssr112345 11 120598346 to 120598405 59 - TSS region transcription start site region 112345
Anapc11 11 120598421 to 120608198 9777 + protein coding gene anaphase promoting complex subunit 11
Tssr106320 11 120598454 to 120598518 64 + TSS region transcription start site region 106320
Tssr112346 11 120598514 to 120598518 4 - TSS region transcription start site region 112346
Tssr106321 11 120598535 to 120598549 14 + TSS region transcription start site region 106321
Tssr106322 11 120598620 to 120598640 20 + TSS region transcription start site region 106322
Tssr106323 11 120598641 to 120598678 37 + TSS region transcription start site region 106323
Tssr106324 11 120598680 to 120598693 13 + TSS region transcription start site region 106324
Gm39491 11 120601681 to 120604094 2413 + lncRNA gene predicted gene, 39491
Tssr106325 11 120608300 to 120608307 7 + TSS region transcription start site region 106325
Cpgi4315 11 120608311 to 120608974 663 CpG island CpG island 4315
Tssr106326 11 120608469 to 120608487 18 + TSS region transcription start site region 106326
Npb 11 120608477 to 120609093 616 + protein coding gene neuropeptide B
Tssr106327 11 120608492 to 120608502 10 + TSS region transcription start site region 106327
Pcyt2 11 120610087 to 120617936 7849 - protein coding gene phosphate cytidylyltransferase 2, ethanolamine
Tssr106328 11 120617306 to 120617314 8 + TSS region transcription start site region 106328
Cpgi4316 11 120617331 to 120618266 935 CpG island CpG island 4316
Tssr112347 11 120617794 to 120617804 10 - TSS region transcription start site region 112347
Tssr112348 11 120617859 to 120617881 22 - TSS region transcription start site region 112348
Tssr112349 11 120617887 to 120617941 54 - TSS region transcription start site region 112349
Sirt7 11 120618372 to 120625008 6636 - protein coding gene sirtuin 7
Cpgi4317 11 120624399 to 120625453 1054 CpG island CpG island 4317
Mir6936 11 120624823 to 120624876 53 - miRNA gene microRNA 6936
Tssr112350 11 120624973 to 120624998 25 - TSS region transcription start site region 112350
Mafg 11 120625117 to 120633547 8430 - protein coding gene v-maf musculoaponeurotic fibrosarcoma oncogene family, protein G (avian)
Tssr112351 11 120628079 to 120628103 24 - TSS region transcription start site region 112351
Cpgi4318 11 120629397 to 120629775 378 CpG island CpG island 4318
Tssr106329 11 120629584 to 120629603 19 + TSS region transcription start site region 106329
Tssr112352 11 120630097 to 120630123 26 - TSS region transcription start site region 112352
Tssr112353 11 120630126 to 120630160 34 - TSS region transcription start site region 112353
Tssr112354 11 120630516 to 120630537 21 - TSS region transcription start site region 112354
Tssr112355 11 120630556 to 120630588 32 - TSS region transcription start site region 112355
Cpgi4319 11 120632495 to 120634281 1786 CpG island CpG island 4319
Tssr106330 11 120632681 to 120632714 33 + TSS region transcription start site region 106330
Tssr106331 11 120633183 to 120633194 11 + TSS region transcription start site region 106331
Tssr112356 11 120633355 to 120633374 19 - TSS region transcription start site region 112356
Tssr112357 11 120633539 to 120633591 52 - TSS region transcription start site region 112357
Tssr112358 11 120633594 to 120633605 11 - TSS region transcription start site region 112358
Tssr112359 11 120633622 to 120633650 28 - TSS region transcription start site region 112359
Tssr112360 11 120633669 to 120633676 7 - TSS region transcription start site region 112360
Tssr106332 11 120633719 to 120633761 42 + TSS region transcription start site region 106332
Gm17586 11 120633768 to 120635125 1357 + lincRNA gene predicted gene, 17586
Pycr1 11 120635712 to 120643769 8057 - protein coding gene pyrroline-5-carboxylate reductase 1
Cpgi4320 11 120643191 to 120643925 734 CpG island CpG island 4320
Tssr112361 11 120643289 to 120643302 13 - TSS region transcription start site region 112361
Tssr112362 11 120643697 to 120643762 65 - TSS region transcription start site region 112362
Myadml2 11 120646031 to 120648158 2127 - protein coding gene myeloid-associated differentiation marker-like 2
Cpgi4321 11 120647265 to 120647964 699 CpG island CpG island 4321
Myadml2os 11 120647670 to 120657061 9391 + antisense lncRNA gene myeloid-associated differentiation marker-like 2, opposite strand
Tssr112363 11 120648104 to 120648137 33 - TSS region transcription start site region 112363
Notum 11 120653788 to 120661175 7387 - protein coding gene notum palmitoleoyl-protein carboxylesterase
Cpgi4322 11 120658991 to 120659308 317 CpG island CpG island 4322
Notumos 11 120659157 to 120661815 2658 + antisense lncRNA gene notum palmitoleoyl-protein carboxylesterase, opposite strand
Cpgi4323 11 120659667 to 120661606 1939 CpG island CpG island 4323
Tssr112364 11 120660531 to 120660557 26 - TSS region transcription start site region 112364
Tssr112365 11 120660565 to 120660587 22 - TSS region transcription start site region 112365
Tssr3759 11 120660600 to 120660612 12 - TSS region transcription start site region 3759
Tssr3760 11 120660668 to 120660684 16 - TSS region transcription start site region 3760
Tssr112366 11 120661184 to 120661199 15 - TSS region transcription start site region 112366
Cpgi4324 11 120672685 to 120673598 913 CpG island CpG island 4324
Tssr106333 11 120672967 to 120672978 11 + TSS region transcription start site region 106333
Aspscr1 11 120672973 to 120709447 36474 + protein coding gene alveolar soft part sarcoma chromosome region, candidate 1 (human)
Tssr106334 11 120672998 to 120673009 11 + TSS region transcription start site region 106334
Tssr106335 11 120673018 to 120673066 48 + TSS region transcription start site region 106335
Tssr112367 11 120673195 to 120673210 15 - TSS region transcription start site region 112367
Tssr106336 11 120673369 to 120673393 24 + TSS region transcription start site region 106336
Tssr106337 11 120673697 to 120673716 19 + TSS region transcription start site region 106337
Tssr106338 11 120677325 to 120677355 30 + TSS region transcription start site region 106338
Gm17178 11 120689146 to 120709447 20301 - antisense lncRNA gene predicted gene 17178
Tssr106339 11 120703987 to 120704002 15 + TSS region transcription start site region 106339
Tssr106340 11 120708072 to 120708090 18 + TSS region transcription start site region 106340
Tssr106341 11 120708101 to 120708117 16 + TSS region transcription start site region 106341
Cenpx 11 120710942 to 120713738 2796 - protein coding gene centromere protein X
Tssr112368 11 120711113 to 120711163 50 - TSS region transcription start site region 112368
Cpgi4325 11 120712627 to 120714503 1876 CpG island CpG island 4325
Tssr112369 11 120713725 to 120713748 23 - TSS region transcription start site region 112369
Tssr106342 11 120713919 to 120713965 46 + TSS region transcription start site region 106342
Lrrc45 11 120713943 to 120721128 7185 + protein coding gene leucine rich repeat containing 45
Tssr106343 11 120713978 to 120713999 21 + TSS region transcription start site region 106343
Cpgi4326 11 120720548 to 120722510 1962 CpG island CpG island 4326
Tssr106344 11 120721452 to 120721536 84 + TSS region transcription start site region 106344
Rac3 11 120721470 to 120723969 2499 + protein coding gene Rac family small GTPase 3
Tssr106345 11 120721543 to 120721564 21 + TSS region transcription start site region 106345
Tssr106346 11 120721981 to 120722031 50 + TSS region transcription start site region 106346
Tssr106347 11 120722041 to 120722071 30 + TSS region transcription start site region 106347
Tssr106348 11 120722209 to 120722220 11 + TSS region transcription start site region 106348
Tssr106349 11 120722244 to 120722265 21 + TSS region transcription start site region 106349
Dcxr 11 120725399 to 120727281 1882 - protein coding gene dicarbonyl L-xylulose reductase
Tssr112370 11 120726659 to 120726667 8 - TSS region transcription start site region 112370
Cpgi4327 11 120726821 to 120727374 553 CpG island CpG island 4327
Tssr112371 11 120727226 to 120727292 66 - TSS region transcription start site region 112371
Tssr112372 11 120727293 to 120727306 13 - TSS region transcription start site region 112372
Tssr112373 11 120727314 to 120727321 7 - TSS region transcription start site region 112373
Cbr2 11 120729485 to 120732025 2540 - protein coding gene carbonyl reductase 2
Tssr106350 11 120729486 to 120729497 11 + TSS region transcription start site region 106350
Cpgi4328 11 120729496 to 120729816 320 CpG island CpG island 4328
Tssr112374 11 120729520 to 120729529 9 - TSS region transcription start site region 112374
Tssr106351 11 120729537 to 120729548 11 + TSS region transcription start site region 106351
Tssr106352 11 120729558 to 120729638 80 + TSS region transcription start site region 106352
Tssr112375 11 120729570 to 120729581 11 - TSS region transcription start site region 112375
Tssr112376 11 120729595 to 120729623 28 - TSS region transcription start site region 112376
Tssr112377 11 120729633 to 120729640 7 - TSS region transcription start site region 112377
Tssr112378 11 120729641 to 120729663 22 - TSS region transcription start site region 112378
Tssr112379 11 120729665 to 120729671 6 - TSS region transcription start site region 112379
Tssr106353 11 120729666 to 120729688 22 + TSS region transcription start site region 106353
Tssr112380 11 120729674 to 120729696 22 - TSS region transcription start site region 112380
Tssr112381 11 120729719 to 120729730 11 - TSS region transcription start site region 112381
Tssr112382 11 120729732 to 120729750 18 - TSS region transcription start site region 112382
Tssr112383 11 120729814 to 120729822 8 - TSS region transcription start site region 112383
Tssr106354 11 120730253 to 120730260 7 + TSS region transcription start site region 106354
Tssr106355 11 120730261 to 120730296 35 + TSS region transcription start site region 106355
Tssr112384 11 120730304 to 120730312 8 - TSS region transcription start site region 112384
Tssr106356 11 120730417 to 120730453 36 + TSS region transcription start site region 106356
Tssr112385 11 120730451 to 120730465 14 - TSS region transcription start site region 112385
Tssr112386 11 120730476 to 120730487 11 - TSS region transcription start site region 112386
Tssr106357 11 120730494 to 120730507 13 + TSS region transcription start site region 106357
Tssr112387 11 120730502 to 120730515 13 - TSS region transcription start site region 112387
Tssr106358 11 120730614 to 120730641 27 + TSS region transcription start site region 106358
Tssr112388 11 120730640 to 120730676 36 - TSS region transcription start site region 112388
Tssr106359 11 120730742 to 120730755 13 + TSS region transcription start site region 106359
Tssr106360 11 120730768 to 120730815 47 + TSS region transcription start site region 106360
Tssr106361 11 120730823 to 120730866 43 + TSS region transcription start site region 106361
Tssr112389 11 120730827 to 120730845 18 - TSS region transcription start site region 112389
Tssr112390 11 120730851 to 120730867 16 - TSS region transcription start site region 112390
Tssr106362 11 120730868 to 120730877 9 + TSS region transcription start site region 106362
Tssr112391 11 120730877 to 120730887 10 - TSS region transcription start site region 112391
Tssr112392 11 120730892 to 120730904 12 - TSS region transcription start site region 112392
Tssr112393 11 120731042 to 120731053 11 - TSS region transcription start site region 112393
Tssr112394 11 120731086 to 120731107 21 - TSS region transcription start site region 112394
Tssr112395 11 120731893 to 120731903 10 - TSS region transcription start site region 112395
Tssr112396 11 120731983 to 120731998 15 - TSS region transcription start site region 112396
Tssr112397 11 120748000 to 120748003 3 - TSS region transcription start site region 112397
Tssr106363 11 120762792 to 120762793 1 + TSS region transcription start site region 106363
Hmga1b 11 120762794 to 120764392 1598 + protein coding gene high mobility group AT-hook 1B
Tssr106364 11 120762818 to 120762829 11 + TSS region transcription start site region 106364
Tssr106365 11 120762987 to 120763018 31 + TSS region transcription start site region 106365
Tssr106366 11 120763084 to 120763106 22 + TSS region transcription start site region 106366
Tssr106367 11 120763129 to 120763145 16 + TSS region transcription start site region 106367
Tssr106368 11 120765284 to 120765300 16 + TSS region transcription start site region 106368
Gm11771 11 120765311 to 120767366 2055 + pseudogene predicted gene 11771
Tssr106369 11 120766249 to 120766266 17 + TSS region transcription start site region 106369
Tssr106370 11 120767043 to 120767081 38 + TSS region transcription start site region 106370
Tssr106371 11 120767096 to 120767109 13 + TSS region transcription start site region 106371
Tssr106372 11 120767321 to 120767351 30 + TSS region transcription start site region 106372
Rfng 11 120780746 to 120784207 3461 - protein coding gene RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase
Tssr112398 11 120781826 to 120781841 15 - TSS region transcription start site region 112398
Cpgi4329 11 120783264 to 120785274 2010 CpG island CpG island 4329
Tssr112399 11 120784166 to 120784176 10 - TSS region transcription start site region 112399
Tssr112400 11 120784183 to 120784209 26 - TSS region transcription start site region 112400
Tssr112401 11 120784210 to 120784230 20 - TSS region transcription start site region 112401
Tssr112402 11 120784252 to 120784261 9 - TSS region transcription start site region 112402
Tssr106373 11 120784257 to 120784272 15 + TSS region transcription start site region 106373
Gps1 11 120784272 to 120789102 4830 + protein coding gene G protein pathway suppressor 1
Tssr106374 11 120784308 to 120784345 37 + TSS region transcription start site region 106374
Tssr106375 11 120784441 to 120784453 12 + TSS region transcription start site region 106375
Tssr106376 11 120784498 to 120784570 72 + TSS region transcription start site region 106376
Dus1l 11 120789201 to 120796403 7202 - protein coding gene dihydrouridine synthase 1-like (S. cerevisiae)
Cpgi4330 11 120795693 to 120796659 966 CpG island CpG island 4330
Tssr112403 11 120796369 to 120796405 36 - TSS region transcription start site region 112403
Fasn 11 120805958 to 120824547 18589 - protein coding gene fatty acid synthase
Tssr112404 11 120807856 to 120807859 3 - TSS region transcription start site region 112404
Tssr112405 11 120809156 to 120809176 20 - TSS region transcription start site region 112405
Tssr112406 11 120816209 to 120816233 24 - TSS region transcription start site region 112406
Tssr112407 11 120816404 to 120816424 20 - TSS region transcription start site region 112407
Tssr112408 11 120817149 to 120817163 14 - TSS region transcription start site region 112408
Tssr112409 11 120817178 to 120817193 15 - TSS region transcription start site region 112409
Tssr112410 11 120818585 to 120818597 12 - TSS region transcription start site region 112410
Tssr112411 11 120819161 to 120819182 21 - TSS region transcription start site region 112411
Tssr112412 11 120820291 to 120820310 19 - TSS region transcription start site region 112412
Tssr112413 11 120820616 to 120820636 20 - TSS region transcription start site region 112413
Tssr112414 11 120821130 to 120821138 8 - TSS region transcription start site region 112414
Tssr112415 11 120821198 to 120821209 11 - TSS region transcription start site region 112415
Cpgi4331 11 120823246 to 120825066 1820 CpG island CpG island 4331
Tssr112416 11 120824098 to 120824116 18 - TSS region transcription start site region 112416
Tssr112417 11 120824524 to 120824576 52 - TSS region transcription start site region 112417
Tssr112418 11 120825155 to 120825183 28 - TSS region transcription start site region 112418
Ccdc57 11 120826529 to 120932872 106343 - protein coding gene coiled-coil domain containing 57
Gm11773 11 120831029 to 120834244 3215 + antisense lncRNA gene predicted gene 11773
Tssr112419 11 120852674 to 120852700 26 - TSS region transcription start site region 112419
Tssr112420 11 120856232 to 120856251 19 - TSS region transcription start site region 112420
Tssr112421 11 120866601 to 120866604 3 - TSS region transcription start site region 112421
Tssr112422 11 120866605 to 120866617 12 - TSS region transcription start site region 112422
Tssr112423 11 120866619 to 120866639 20 - TSS region transcription start site region 112423
Tssr112424 11 120866641 to 120866674 33 - TSS region transcription start site region 112424
Tssr112425 11 120882929 to 120882936 7 - TSS region transcription start site region 112425
Tssr112426 11 120903356 to 120903366 10 - TSS region transcription start site region 112426
Tssr112427 11 120903618 to 120903626 8 - TSS region transcription start site region 112427
Cpgi4332 11 120932526 to 120933182 656 CpG island CpG island 4332
Tssr112428 11 120932832 to 120932876 44 - TSS region transcription start site region 112428
A430102A20Rik 11 120933002 to 120934012 1010 + lncRNA gene RIKEN cDNA A430102A20 gene
Tssr112429 11 120938124 to 120938156 32 - TSS region transcription start site region 112429
Tssr106377 11 120939036 to 120939069 33 + TSS region transcription start site region 106377
Tssr3761 11 120941987 to 120941994 7 - TSS region transcription start site region 3761
Cpgi4333 11 120948484 to 120949699 1215 CpG island CpG island 4333
Slc16a3 11 120948484 to 120959000 10516 + protein coding gene solute carrier family 16 (monocarboxylic acid transporters), member 3
Tssr106378 11 120948493 to 120948533 40 + TSS region transcription start site region 106378
Tssr106379 11 120948543 to 120948553 10 + TSS region transcription start site region 106379