Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:120543492-120673502

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118 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Mcrip1 11 120542888 to 120549727 6839 - protein coding gene MAPK regulated corepressor interacting protein 1
Cpgi4310 11 120548945 to 120550375 1430 CpG island CpG island 4310
Tssr112310 11 120549695 to 120549728 33 - TSS region transcription start site region 112310
Ppp1r27 11 120549979 to 120551132 1153 - protein coding gene protein phosphatase 1, regulatory subunit 27
Cpgi4311 11 120550797 to 120551146 349 CpG island CpG island 4311
Tssr112311 11 120550937 to 120550963 26 - TSS region transcription start site region 112311
Tssr112312 11 120551126 to 120551138 12 - TSS region transcription start site region 112312
Tssr112313 11 120551147 to 120551158 11 - TSS region transcription start site region 112313
Tssr112314 11 120551216 to 120551225 9 - TSS region transcription start site region 112314
P4hb 11 120560304 to 120572936 12632 - protein coding gene prolyl 4-hydroxylase, beta polypeptide
Tssr112315 11 120560337 to 120560376 39 - TSS region transcription start site region 112315
Tssr112316 11 120561188 to 120561269 81 - TSS region transcription start site region 112316
Tssr112317 11 120562696 to 120562714 18 - TSS region transcription start site region 112317
Tssr112318 11 120563302 to 120563336 34 - TSS region transcription start site region 112318
Tssr112319 11 120567994 to 120568027 33 - TSS region transcription start site region 112319
Cpgi4312 11 120572428 to 120573794 1366 CpG island CpG island 4312
Tssr112320 11 120572822 to 120572842 20 - TSS region transcription start site region 112320
Tssr112321 11 120572864 to 120572881 17 - TSS region transcription start site region 112321
Tssr112322 11 120572905 to 120572908 3 - TSS region transcription start site region 112322
Tssr112323 11 120572915 to 120572921 6 - TSS region transcription start site region 112323
Tssr112324 11 120573220 to 120573230 10 - TSS region transcription start site region 112324
Tssr112325 11 120573235 to 120573281 46 - TSS region transcription start site region 112325
Tssr112326 11 120573302 to 120573329 27 - TSS region transcription start site region 112326
Tssr106315 11 120573420 to 120573470 50 + TSS region transcription start site region 106315
Tssr112327 11 120573659 to 120573661 2 - TSS region transcription start site region 112327
Tssr112328 11 120573704 to 120573715 11 - TSS region transcription start site region 112328
Tssr106316 11 120573814 to 120573856 42 + TSS region transcription start site region 106316
Tssr106317 11 120573922 to 120573935 13 + TSS region transcription start site region 106317
Tssr112329 11 120575486 to 120575521 35 - TSS region transcription start site region 112329
Tssr106318 11 120576899 to 120576916 17 + TSS region transcription start site region 106318
Arhgdia 11 120578104 to 120581624 3520 - protein coding gene Rho GDP dissociation inhibitor (GDI) alpha
Tssr112330 11 120578704 to 120578715 11 - TSS region transcription start site region 112330
Tssr112331 11 120578732 to 120578757 25 - TSS region transcription start site region 112331
Tssr112332 11 120578843 to 120578864 21 - TSS region transcription start site region 112332
Tssr112333 11 120578887 to 120578903 16 - TSS region transcription start site region 112333
Tssr112334 11 120578958 to 120578959 1 - TSS region transcription start site region 112334
Tssr112335 11 120578992 to 120579003 11 - TSS region transcription start site region 112335
Tssr112336 11 120579105 to 120579143 38 - TSS region transcription start site region 112336
Tssr112337 11 120579159 to 120579198 39 - TSS region transcription start site region 112337
Tssr112338 11 120579200 to 120579213 13 - TSS region transcription start site region 112338
Tssr112339 11 120579228 to 120579244 16 - TSS region transcription start site region 112339
Tssr112340 11 120579315 to 120579332 17 - TSS region transcription start site region 112340
Tssr112341 11 120579371 to 120579395 24 - TSS region transcription start site region 112341
Cpgi4313 11 120580563 to 120582366 1803 CpG island CpG island 4313
Tssr112342 11 120581196 to 120581237 41 - TSS region transcription start site region 112342
Tssr112343 11 120581537 to 120581548 11 - TSS region transcription start site region 112343
Tssr112344 11 120581553 to 120581632 79 - TSS region transcription start site region 112344
Tssr106319 11 120581661 to 120581700 39 + TSS region transcription start site region 106319
Gm3807 11 120581670 to 120582837 1167 + unclassified gene predicted gene 3807
Gm46304 11 120587138 to 120589958 2820 - lncRNA gene predicted gene, 46304
Alyref 11 120594504 to 120598365 3861 - protein coding gene Aly/REF export factor
Cpgi4314 11 120597292 to 120599175 1883 CpG island CpG island 4314
Tssr112345 11 120598346 to 120598405 59 - TSS region transcription start site region 112345
Anapc11 11 120598421 to 120608198 9777 + protein coding gene anaphase promoting complex subunit 11
Tssr106320 11 120598454 to 120598518 64 + TSS region transcription start site region 106320
Tssr112346 11 120598514 to 120598518 4 - TSS region transcription start site region 112346
Tssr106321 11 120598535 to 120598549 14 + TSS region transcription start site region 106321
Tssr106322 11 120598620 to 120598640 20 + TSS region transcription start site region 106322
Tssr106323 11 120598641 to 120598678 37 + TSS region transcription start site region 106323
Tssr106324 11 120598680 to 120598693 13 + TSS region transcription start site region 106324
Gm39491 11 120601681 to 120604094 2413 + lncRNA gene predicted gene, 39491
Tssr106325 11 120608300 to 120608307 7 + TSS region transcription start site region 106325
Cpgi4315 11 120608311 to 120608974 663 CpG island CpG island 4315
Tssr106326 11 120608469 to 120608487 18 + TSS region transcription start site region 106326
Npb 11 120608477 to 120609093 616 + protein coding gene neuropeptide B
Tssr106327 11 120608492 to 120608502 10 + TSS region transcription start site region 106327
Pcyt2 11 120610087 to 120617936 7849 - protein coding gene phosphate cytidylyltransferase 2, ethanolamine
Tssr106328 11 120617306 to 120617314 8 + TSS region transcription start site region 106328
Cpgi4316 11 120617331 to 120618266 935 CpG island CpG island 4316
Tssr112347 11 120617794 to 120617804 10 - TSS region transcription start site region 112347
Tssr112348 11 120617859 to 120617881 22 - TSS region transcription start site region 112348
Tssr112349 11 120617887 to 120617941 54 - TSS region transcription start site region 112349
Sirt7 11 120618372 to 120625008 6636 - protein coding gene sirtuin 7
Cpgi4317 11 120624399 to 120625453 1054 CpG island CpG island 4317
Mir6936 11 120624823 to 120624876 53 - miRNA gene microRNA 6936
Tssr112350 11 120624973 to 120624998 25 - TSS region transcription start site region 112350
Mafg 11 120625117 to 120633547 8430 - protein coding gene v-maf musculoaponeurotic fibrosarcoma oncogene family, protein G (avian)
Tssr112351 11 120628079 to 120628103 24 - TSS region transcription start site region 112351
Cpgi4318 11 120629397 to 120629775 378 CpG island CpG island 4318
Tssr106329 11 120629584 to 120629603 19 + TSS region transcription start site region 106329
Tssr112352 11 120630097 to 120630123 26 - TSS region transcription start site region 112352
Tssr112353 11 120630126 to 120630160 34 - TSS region transcription start site region 112353
Tssr112354 11 120630516 to 120630537 21 - TSS region transcription start site region 112354
Tssr112355 11 120630556 to 120630588 32 - TSS region transcription start site region 112355
Cpgi4319 11 120632495 to 120634281 1786 CpG island CpG island 4319
Tssr106330 11 120632681 to 120632714 33 + TSS region transcription start site region 106330
Tssr106331 11 120633183 to 120633194 11 + TSS region transcription start site region 106331
Tssr112356 11 120633355 to 120633374 19 - TSS region transcription start site region 112356
Tssr112357 11 120633539 to 120633591 52 - TSS region transcription start site region 112357
Tssr112358 11 120633594 to 120633605 11 - TSS region transcription start site region 112358
Tssr112359 11 120633622 to 120633650 28 - TSS region transcription start site region 112359
Tssr112360 11 120633669 to 120633676 7 - TSS region transcription start site region 112360
Tssr106332 11 120633719 to 120633761 42 + TSS region transcription start site region 106332
Gm17586 11 120633768 to 120635125 1357 + lincRNA gene predicted gene, 17586
Pycr1 11 120635712 to 120643769 8057 - protein coding gene pyrroline-5-carboxylate reductase 1
Cpgi4320 11 120643191 to 120643925 734 CpG island CpG island 4320
Tssr112361 11 120643289 to 120643302 13 - TSS region transcription start site region 112361
Tssr112362 11 120643697 to 120643762 65 - TSS region transcription start site region 112362
Myadml2 11 120646031 to 120648158 2127 - protein coding gene myeloid-associated differentiation marker-like 2
Cpgi4321 11 120647265 to 120647964 699 CpG island CpG island 4321
Myadml2os 11 120647670 to 120657061 9391 + antisense lncRNA gene myeloid-associated differentiation marker-like 2, opposite strand
Tssr112363 11 120648104 to 120648137 33 - TSS region transcription start site region 112363
Notum 11 120653788 to 120661175 7387 - protein coding gene notum palmitoleoyl-protein carboxylesterase
Cpgi4322 11 120658991 to 120659308 317 CpG island CpG island 4322
Notumos 11 120659157 to 120661815 2658 + antisense lncRNA gene notum palmitoleoyl-protein carboxylesterase, opposite strand
Cpgi4323 11 120659667 to 120661606 1939 CpG island CpG island 4323
Tssr112364 11 120660531 to 120660557 26 - TSS region transcription start site region 112364
Tssr112365 11 120660565 to 120660587 22 - TSS region transcription start site region 112365
Tssr3759 11 120660600 to 120660612 12 - TSS region transcription start site region 3759
Tssr3760 11 120660668 to 120660684 16 - TSS region transcription start site region 3760
Tssr112366 11 120661184 to 120661199 15 - TSS region transcription start site region 112366
Cpgi4324 11 120672685 to 120673598 913 CpG island CpG island 4324
Tssr106333 11 120672967 to 120672978 11 + TSS region transcription start site region 106333
Aspscr1 11 120672973 to 120709447 36474 + protein coding gene alveolar soft part sarcoma chromosome region, candidate 1 (human)
Tssr106334 11 120672998 to 120673009 11 + TSS region transcription start site region 106334
Tssr106335 11 120673018 to 120673066 48 + TSS region transcription start site region 106335
Tssr112367 11 120673195 to 120673210 15 - TSS region transcription start site region 112367
Tssr106336 11 120673369 to 120673393 24 + TSS region transcription start site region 106336