Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000


Click here to work with the entire chromosomal region 11:120501216-120601225

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80 genes found.
Gene symbol Chromo-
some
Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm39490 11 120506192 to 120508750 2558 + lncRNA gene predicted gene, 39490
Cpgi4308 11 120515523 to 120515870 347 CpG island CpG island 4308
Gm11789 11 120526855 to 120531784 4929 - lncRNA gene predicted gene 11789
Tssr106303 11 120529187 to 120529198 11 + TSS region transcription start site region 106303
Tssr106304 11 120530076 to 120530101 25 + TSS region transcription start site region 106304
Cpgi4309 11 120530091 to 120531306 1215 CpG island CpG island 4309
Tssr106305 11 120530508 to 120530518 10 + TSS region transcription start site region 106305
Tssr106306 11 120530520 to 120530534 14 + TSS region transcription start site region 106306
Tssr106307 11 120530537 to 120530559 22 + TSS region transcription start site region 106307
Tssr106308 11 120530567 to 120530577 10 + TSS region transcription start site region 106308
Tssr112307 11 120530572 to 120530602 30 - TSS region transcription start site region 112307
Tssr106309 11 120530671 to 120530687 16 + TSS region transcription start site region 106309
Tssr106310 11 120530688 to 120530705 17 + TSS region transcription start site region 106310
Gcgr 11 120530699 to 120538986 8287 + protein coding gene glucagon receptor
Tssr106311 11 120530707 to 120530733 26 + TSS region transcription start site region 106311
Tssr106312 11 120530750 to 120530764 14 + TSS region transcription start site region 106312
Tssr106313 11 120530767 to 120530784 17 + TSS region transcription start site region 106313
Tssr112308 11 120531493 to 120531518 25 - TSS region transcription start site region 112308
Tssr112309 11 120531777 to 120531791 14 - TSS region transcription start site region 112309
Tssr106314 11 120534739 to 120534740 1 + TSS region transcription start site region 106314
Mcrip1 11 120542888 to 120549727 6839 - protein coding gene MAPK regulated corepressor interacting protein 1
Cpgi4310 11 120548945 to 120550375 1430 CpG island CpG island 4310
Tssr112310 11 120549695 to 120549728 33 - TSS region transcription start site region 112310
Ppp1r27 11 120549979 to 120551132 1153 - protein coding gene protein phosphatase 1, regulatory subunit 27
Cpgi4311 11 120550797 to 120551146 349 CpG island CpG island 4311
Tssr112311 11 120550937 to 120550963 26 - TSS region transcription start site region 112311
Tssr112312 11 120551126 to 120551138 12 - TSS region transcription start site region 112312
Tssr112313 11 120551147 to 120551158 11 - TSS region transcription start site region 112313
Tssr112314 11 120551216 to 120551225 9 - TSS region transcription start site region 112314
P4hb 11 120560304 to 120572936 12632 - protein coding gene prolyl 4-hydroxylase, beta polypeptide
Tssr112315 11 120560337 to 120560376 39 - TSS region transcription start site region 112315
Tssr112316 11 120561188 to 120561269 81 - TSS region transcription start site region 112316
Tssr112317 11 120562696 to 120562714 18 - TSS region transcription start site region 112317
Tssr112318 11 120563302 to 120563336 34 - TSS region transcription start site region 112318
Tssr112319 11 120567994 to 120568027 33 - TSS region transcription start site region 112319
Cpgi4312 11 120572428 to 120573794 1366 CpG island CpG island 4312
Tssr112320 11 120572822 to 120572842 20 - TSS region transcription start site region 112320
Tssr112321 11 120572864 to 120572881 17 - TSS region transcription start site region 112321
Tssr112322 11 120572905 to 120572908 3 - TSS region transcription start site region 112322
Tssr112323 11 120572915 to 120572921 6 - TSS region transcription start site region 112323
Tssr112324 11 120573220 to 120573230 10 - TSS region transcription start site region 112324
Tssr112325 11 120573235 to 120573281 46 - TSS region transcription start site region 112325
Tssr112326 11 120573302 to 120573329 27 - TSS region transcription start site region 112326
Tssr106315 11 120573420 to 120573470 50 + TSS region transcription start site region 106315
Tssr112327 11 120573659 to 120573661 2 - TSS region transcription start site region 112327
Tssr112328 11 120573704 to 120573715 11 - TSS region transcription start site region 112328
Tssr106316 11 120573814 to 120573856 42 + TSS region transcription start site region 106316
Tssr106317 11 120573922 to 120573935 13 + TSS region transcription start site region 106317
Tssr112329 11 120575486 to 120575521 35 - TSS region transcription start site region 112329
Tssr106318 11 120576899 to 120576916 17 + TSS region transcription start site region 106318
Arhgdia 11 120578104 to 120581624 3520 - protein coding gene Rho GDP dissociation inhibitor (GDI) alpha
Tssr112330 11 120578704 to 120578715 11 - TSS region transcription start site region 112330
Tssr112331 11 120578732 to 120578757 25 - TSS region transcription start site region 112331
Tssr112332 11 120578843 to 120578864 21 - TSS region transcription start site region 112332
Tssr112333 11 120578887 to 120578903 16 - TSS region transcription start site region 112333
Tssr112334 11 120578958 to 120578959 1 - TSS region transcription start site region 112334
Tssr112335 11 120578992 to 120579003 11 - TSS region transcription start site region 112335
Tssr112336 11 120579105 to 120579143 38 - TSS region transcription start site region 112336
Tssr112337 11 120579159 to 120579198 39 - TSS region transcription start site region 112337
Tssr112338 11 120579200 to 120579213 13 - TSS region transcription start site region 112338
Tssr112339 11 120579228 to 120579244 16 - TSS region transcription start site region 112339
Tssr112340 11 120579315 to 120579332 17 - TSS region transcription start site region 112340
Tssr112341 11 120579371 to 120579395 24 - TSS region transcription start site region 112341
Cpgi4313 11 120580563 to 120582366 1803 CpG island CpG island 4313
Tssr112342 11 120581196 to 120581237 41 - TSS region transcription start site region 112342
Tssr112343 11 120581537 to 120581548 11 - TSS region transcription start site region 112343
Tssr112344 11 120581553 to 120581632 79 - TSS region transcription start site region 112344
Tssr106319 11 120581661 to 120581700 39 + TSS region transcription start site region 106319
Gm3807 11 120581670 to 120582837 1167 + unclassified gene predicted gene 3807
Gm46304 11 120587138 to 120589958 2820 - lncRNA gene predicted gene, 46304
Alyref 11 120594504 to 120598365 3861 - protein coding gene Aly/REF export factor
Cpgi4314 11 120597292 to 120599175 1883 CpG island CpG island 4314
Tssr112345 11 120598346 to 120598405 59 - TSS region transcription start site region 112345
Anapc11 11 120598421 to 120608198 9777 + protein coding gene anaphase promoting complex subunit 11
Tssr106320 11 120598454 to 120598518 64 + TSS region transcription start site region 106320
Tssr112346 11 120598514 to 120598518 4 - TSS region transcription start site region 112346
Tssr106321 11 120598535 to 120598549 14 + TSS region transcription start site region 106321
Tssr106322 11 120598620 to 120598640 20 + TSS region transcription start site region 106322
Tssr106323 11 120598641 to 120598678 37 + TSS region transcription start site region 106323
Tssr106324 11 120598680 to 120598693 13 + TSS region transcription start site region 106324