Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:120395041-120565058

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81 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Nploc4 11 120380370 to 120437708 57338 - protein coding gene NPL4 homolog, ubiquitin recognition factor
Tssr112296 11 120404911 to 120404918 7 - TSS region transcription start site region 112296
Cpgi4303 11 120437035 to 120437903 868 CpG island CpG island 4303
Tssr112297 11 120437633 to 120437654 21 - TSS region transcription start site region 112297
Tssr112298 11 120437656 to 120437731 75 - TSS region transcription start site region 112298
Tssr112299 11 120437754 to 120437761 7 - TSS region transcription start site region 112299
Tspan10 11 120442644 to 120446950 4306 + protein coding gene tetraspanin 10
Tssr106284 11 120442653 to 120442701 48 + TSS region transcription start site region 106284
Tssr106285 11 120444311 to 120444323 12 + TSS region transcription start site region 106285
Pde6g 11 120447607 to 120453500 5893 - protein coding gene phosphodiesterase 6G, cGMP-specific, rod, gamma
Tssr112300 11 120453456 to 120453469 13 - TSS region transcription start site region 112300
Tssr112301 11 120453473 to 120453482 9 - TSS region transcription start site region 112301
Oxld1 11 120456601 to 120458063 1462 - protein coding gene oxidoreductase like domain containing 1
Cpgi4304 11 120457516 to 120458548 1032 CpG island CpG island 4304
Tssr112302 11 120458038 to 120458082 44 - TSS region transcription start site region 112302
Tssr106286 11 120458093 to 120458147 54 + TSS region transcription start site region 106286
Ccdc137 11 120458129 to 120464358 6229 + protein coding gene coiled-coil domain containing 137
Arl16 11 120464866 to 120467607 2741 - protein coding gene ADP-ribosylation factor-like 16
Cpgi4305 11 120466777 to 120468201 1424 CpG island CpG island 4305
Tssr112303 11 120467330 to 120467371 41 - TSS region transcription start site region 112303
Tssr112304 11 120467414 to 120467479 65 - TSS region transcription start site region 112304
Hgs 11 120467635 to 120483984 16349 + protein coding gene HGF-regulated tyrosine kinase substrate
Tssr106287 11 120467655 to 120467719 64 + TSS region transcription start site region 106287
Tssr106288 11 120467759 to 120467765 6 + TSS region transcription start site region 106288
Tssr106289 11 120467773 to 120467799 26 + TSS region transcription start site region 106289
Tssr106290 11 120467800 to 120467827 27 + TSS region transcription start site region 106290
Tssr106291 11 120479598 to 120479612 14 + TSS region transcription start site region 106291
Tssr3758 11 120479648 to 120479680 32 + TSS region transcription start site region 3758
Tssr106292 11 120480041 to 120480058 17 + TSS region transcription start site region 106292
Tssr106293 11 120482333 to 120482335 2 + TSS region transcription start site region 106293
Cpgi4306 11 120484210 to 120485336 1126 CpG island CpG island 4306
Tssr106294 11 120484635 to 120484646 11 + TSS region transcription start site region 106294
Tssr106295 11 120484651 to 120484696 45 + TSS region transcription start site region 106295
Mrpl12 11 120484669 to 120488754 4085 + protein coding gene mitochondrial ribosomal protein L12
Tssr106296 11 120485032 to 120485049 17 + TSS region transcription start site region 106296
Tssr106297 11 120485338 to 120485354 16 + TSS region transcription start site region 106297
Gm16755 11 120486339 to 120488582 2243 - lincRNA gene predicted gene, 16755
Gm11788 11 120489406 to 120492394 2988 - antisense lncRNA gene predicted gene 11788
Cpgi4307 11 120491617 to 120492638 1021 CpG island CpG island 4307
Slc25a10 11 120491840 to 120499187 7347 + protein coding gene solute carrier family 25 (mitochondrial carrier, dicarboxylate transporter), member 10
Tssr106298 11 120491866 to 120491889 23 + TSS region transcription start site region 106298
Tssr106299 11 120491895 to 120491921 26 + TSS region transcription start site region 106299
Tssr106300 11 120491929 to 120491949 20 + TSS region transcription start site region 106300
Tssr106301 11 120491962 to 120491971 9 + TSS region transcription start site region 106301
Tssr112305 11 120492540 to 120492551 11 - TSS region transcription start site region 112305
Tssr112306 11 120493493 to 120493501 8 - TSS region transcription start site region 112306
Tssr106302 11 120498085 to 120498103 18 + TSS region transcription start site region 106302
Gm39490 11 120506192 to 120508750 2558 + lncRNA gene predicted gene, 39490
Cpgi4308 11 120515523 to 120515870 347 CpG island CpG island 4308
Gm11789 11 120526855 to 120531784 4929 - antisense lncRNA gene predicted gene 11789
Tssr106303 11 120529187 to 120529198 11 + TSS region transcription start site region 106303
Tssr106304 11 120530076 to 120530101 25 + TSS region transcription start site region 106304
Cpgi4309 11 120530091 to 120531306 1215 CpG island CpG island 4309
Tssr106305 11 120530508 to 120530518 10 + TSS region transcription start site region 106305
Tssr106306 11 120530520 to 120530534 14 + TSS region transcription start site region 106306
Tssr106307 11 120530537 to 120530559 22 + TSS region transcription start site region 106307
Tssr106308 11 120530567 to 120530577 10 + TSS region transcription start site region 106308
Tssr112307 11 120530572 to 120530602 30 - TSS region transcription start site region 112307
Tssr106309 11 120530671 to 120530687 16 + TSS region transcription start site region 106309
Tssr106310 11 120530688 to 120530705 17 + TSS region transcription start site region 106310
Gcgr 11 120530699 to 120538986 8287 + protein coding gene glucagon receptor
Tssr106311 11 120530707 to 120530733 26 + TSS region transcription start site region 106311
Tssr106312 11 120530750 to 120530764 14 + TSS region transcription start site region 106312
Tssr106313 11 120530767 to 120530784 17 + TSS region transcription start site region 106313
Tssr112308 11 120531493 to 120531518 25 - TSS region transcription start site region 112308
Tssr112309 11 120531777 to 120531791 14 - TSS region transcription start site region 112309
Tssr106314 11 120534739 to 120534740 1 + TSS region transcription start site region 106314
Mcrip1 11 120542888 to 120549727 6839 - protein coding gene MAPK regulated corepressor interacting protein 1
Cpgi4310 11 120548945 to 120550375 1430 CpG island CpG island 4310
Tssr112310 11 120549695 to 120549728 33 - TSS region transcription start site region 112310
Ppp1r27 11 120549979 to 120551132 1153 - protein coding gene protein phosphatase 1, regulatory subunit 27
Cpgi4311 11 120550797 to 120551146 349 CpG island CpG island 4311
Tssr112311 11 120550937 to 120550963 26 - TSS region transcription start site region 112311
Tssr112312 11 120551126 to 120551138 12 - TSS region transcription start site region 112312
Tssr112313 11 120551147 to 120551158 11 - TSS region transcription start site region 112313
Tssr112314 11 120551216 to 120551225 9 - TSS region transcription start site region 112314
P4hb 11 120560304 to 120572936 12632 - protein coding gene prolyl 4-hydroxylase, beta polypeptide
Tssr112315 11 120560337 to 120560376 39 - TSS region transcription start site region 112315
Tssr112316 11 120561188 to 120561269 81 - TSS region transcription start site region 112316
Tssr112317 11 120562696 to 120562714 18 - TSS region transcription start site region 112317
Tssr112318 11 120563302 to 120563336 34 - TSS region transcription start site region 112318