Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:120142350-120552413

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150 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Slc38a10 11 120103960 to 120151346 47386 - protein coding gene solute carrier family 38, member 10
Tssr112272 11 120142890 to 120142891 1 - TSS region transcription start site region 112272
Tssr106269 11 120145128 to 120145130 2 + TSS region transcription start site region 106269
D11Mit293 11 120149142 to 120149254 112 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 293
Tssr106270 11 120150528 to 120150567 39 + TSS region transcription start site region 106270
Cpgi4288 11 120150544 to 120151561 1017 CpG island CpG island 4288
Gm11769 11 120150562 to 120152341 1779 + lncRNA gene predicted gene 11769
Tssr112273 11 120151194 to 120151354 160 - TSS region transcription start site region 112273
Gm39486 11 120157590 to 120164239 6649 - lncRNA gene predicted gene, 39486
Tssr112274 11 120164657 to 120164659 2 - TSS region transcription start site region 112274
Tssr106271 11 120164774 to 120164792 18 + TSS region transcription start site region 106271
Gm9734 11 120183640 to 120186828 3188 + unclassified gene predicted gene 9734
Cpgi4289 11 120185344 to 120186143 799 CpG island CpG island 4289
2810410L24Rik 11 120186650 to 120189856 3206 - lncRNA gene RIKEN cDNA 2810410L24 gene
Cpgi4290 11 120188116 to 120188355 239 CpG island CpG island 4290
Cpgi4291 11 120189212 to 120190282 1070 CpG island CpG island 4291
Tssr112275 11 120189863 to 120189939 76 - TSS region transcription start site region 112275
Gm11770 11 120215082 to 120216993 1911 - antisense lncRNA gene predicted gene 11770
Tssr112276 11 120216631 to 120216642 11 - TSS region transcription start site region 112276
Tssr106272 11 120217239 to 120217247 8 + TSS region transcription start site region 106272
2900052L18Rik 11 120229802 to 120231585 1783 - lncRNA gene RIKEN cDNA 2900052L18 gene
Cpgi4292 11 120230063 to 120230514 451 CpG island CpG island 4292
Tssr106273 11 120230075 to 120230098 23 + TSS region transcription start site region 106273
Cpgi4293 11 120230517 to 120231763 1246 CpG island CpG island 4293
Tssr112277 11 120231465 to 120231477 12 - TSS region transcription start site region 112277
Tssr112278 11 120231517 to 120231541 24 - TSS region transcription start site region 112278
Tssr112279 11 120231578 to 120231607 29 - TSS region transcription start site region 112279
Tssr112280 11 120231628 to 120231639 11 - TSS region transcription start site region 112280
Cpgi4294 11 120232607 to 120233042 435 CpG island CpG island 4294
Tssr106274 11 120232902 to 120232918 16 + TSS region transcription start site region 106274
Tssr106275 11 120232921 to 120232952 31 + TSS region transcription start site region 106275
Bahcc1 11 120232947 to 120292296 59349 + protein coding gene BAH domain and coiled-coil containing 1
Tssr106276 11 120232958 to 120232980 22 + TSS region transcription start site region 106276
Cpgi4295 11 120233392 to 120235157 1765 CpG island CpG island 4295
Tssr106277 11 120233928 to 120233975 47 + TSS region transcription start site region 106277
Tssr112281 11 120235073 to 120235080 7 - TSS region transcription start site region 112281
Gm11772 11 120235234 to 120236122 888 - antisense lncRNA gene predicted gene 11772
Cpgi4296 11 120235570 to 120238168 2598 CpG island CpG island 4296
Tssr112282 11 120235868 to 120235899 31 - TSS region transcription start site region 112282
Tssr112283 11 120236052 to 120236058 6 - TSS region transcription start site region 112283
Tssr106278 11 120236493 to 120236524 31 + TSS region transcription start site region 106278
Tssr112284 11 120237309 to 120237335 26 - TSS region transcription start site region 112284
Tssr112285 11 120237356 to 120237367 11 - TSS region transcription start site region 112285
Tssr112286 11 120237600 to 120237646 46 - TSS region transcription start site region 112286
Tssr106279 11 120253044 to 120253063 19 + TSS region transcription start site region 106279
Cpgi4297 11 120261485 to 120261649 164 CpG island CpG island 4297
Gm47297 11 120274487 to 120274624 137 + miRNA gene predicted gene, 47297
Cpgi4298 11 120304847 to 120305619 772 CpG island CpG island 4298
Cpgi4299 11 120310650 to 120311456 806 CpG island CpG island 4299
Cpgi4300 11 120316327 to 120316724 397 CpG island CpG island 4300
Actg1 11 120345687 to 120348495 2808 - protein coding gene actin, gamma, cytoplasmic 1
Gm23419 11 120346736 to 120346819 83 - miRNA gene predicted gene, 23419
Mir6935 11 120347350 to 120347413 63 - miRNA gene microRNA 6935
Tssr112287 11 120347431 to 120347459 28 - TSS region transcription start site region 112287
Cpgi4301 11 120347571 to 120350616 3045 CpG island CpG island 4301
Tssr112288 11 120348179 to 120348189 10 - TSS region transcription start site region 112288
Tssr112289 11 120348204 to 120348245 41 - TSS region transcription start site region 112289
Tssr112290 11 120348495 to 120348508 13 - TSS region transcription start site region 112290
Tssr112291 11 120348513 to 120348559 46 - TSS region transcription start site region 112291
0610009L18Rik 11 120348678 to 120351190 2512 + bidirectional promoter lncRNA gene RIKEN cDNA 0610009L18 gene
Tssr106280 11 120348682 to 120348782 100 + TSS region transcription start site region 106280
Tssr112292 11 120348751 to 120348791 40 - TSS region transcription start site region 112292
Tssr3756 11 120349278 to 120349290 12 + TSS region transcription start site region 3756
Tssr112293 11 120349414 to 120349427 13 - TSS region transcription start site region 112293
Tssr112294 11 120349844 to 120349862 18 - TSS region transcription start site region 112294
Tssr3757 11 120350271 to 120350286 15 + TSS region transcription start site region 3757
Tssr106281 11 120361156 to 120361202 46 + TSS region transcription start site region 106281
Tssr106282 11 120361506 to 120361543 37 + TSS region transcription start site region 106282
Fscn2 11 120361534 to 120368168 6634 + protein coding gene fascin actin-bundling protein 2
Tssr106283 11 120366462 to 120366504 42 + TSS region transcription start site region 106283
Faap100 11 120369562 to 120378746 9184 - protein coding gene Fanconi anemia core complex associated protein 100
Cpgi4302 11 120377911 to 120379205 1294 CpG island CpG island 4302
Tssr112295 11 120378692 to 120378779 87 - TSS region transcription start site region 112295
Gm9981 11 120378800 to 120379811 1011 unclassified gene predicted gene 9981
Nploc4 11 120380370 to 120437708 57338 - protein coding gene NPL4 homolog, ubiquitin recognition factor
Tssr112296 11 120404911 to 120404918 7 - TSS region transcription start site region 112296
Cpgi4303 11 120437035 to 120437903 868 CpG island CpG island 4303
Tssr112297 11 120437633 to 120437654 21 - TSS region transcription start site region 112297
Tssr112298 11 120437656 to 120437731 75 - TSS region transcription start site region 112298
Tssr112299 11 120437754 to 120437761 7 - TSS region transcription start site region 112299
Tspan10 11 120442644 to 120446950 4306 + protein coding gene tetraspanin 10
Tssr106284 11 120442653 to 120442701 48 + TSS region transcription start site region 106284
Tssr106285 11 120444311 to 120444323 12 + TSS region transcription start site region 106285
Pde6g 11 120447607 to 120453500 5893 - protein coding gene phosphodiesterase 6G, cGMP-specific, rod, gamma
Tssr112300 11 120453456 to 120453469 13 - TSS region transcription start site region 112300
Tssr112301 11 120453473 to 120453482 9 - TSS region transcription start site region 112301
Oxld1 11 120456601 to 120458063 1462 - protein coding gene oxidoreductase like domain containing 1
Cpgi4304 11 120457516 to 120458548 1032 CpG island CpG island 4304
Tssr112302 11 120458038 to 120458082 44 - TSS region transcription start site region 112302
Tssr106286 11 120458093 to 120458147 54 + TSS region transcription start site region 106286
Ccdc137 11 120458129 to 120464358 6229 + protein coding gene coiled-coil domain containing 137
Arl16 11 120464866 to 120467607 2741 - protein coding gene ADP-ribosylation factor-like 16
Cpgi4305 11 120466777 to 120468201 1424 CpG island CpG island 4305
Tssr112303 11 120467330 to 120467371 41 - TSS region transcription start site region 112303
Tssr112304 11 120467414 to 120467479 65 - TSS region transcription start site region 112304
Hgs 11 120467635 to 120483984 16349 + protein coding gene HGF-regulated tyrosine kinase substrate
Tssr106287 11 120467655 to 120467719 64 + TSS region transcription start site region 106287
Tssr106288 11 120467759 to 120467765 6 + TSS region transcription start site region 106288
Tssr106289 11 120467773 to 120467799 26 + TSS region transcription start site region 106289
Tssr106290 11 120467800 to 120467827 27 + TSS region transcription start site region 106290
Tssr106291 11 120479598 to 120479612 14 + TSS region transcription start site region 106291
Tssr3758 11 120479648 to 120479680 32 + TSS region transcription start site region 3758
Tssr106292 11 120480041 to 120480058 17 + TSS region transcription start site region 106292
Tssr106293 11 120482333 to 120482335 2 + TSS region transcription start site region 106293
Cpgi4306 11 120484210 to 120485336 1126 CpG island CpG island 4306
Tssr106294 11 120484635 to 120484646 11 + TSS region transcription start site region 106294
Tssr106295 11 120484651 to 120484696 45 + TSS region transcription start site region 106295
Mrpl12 11 120484669 to 120488754 4085 + protein coding gene mitochondrial ribosomal protein L12
Tssr106296 11 120485032 to 120485049 17 + TSS region transcription start site region 106296
Tssr106297 11 120485338 to 120485354 16 + TSS region transcription start site region 106297
Gm16755 11 120486339 to 120488582 2243 - lincRNA gene predicted gene, 16755
Gm11788 11 120489406 to 120492394 2988 - antisense lncRNA gene predicted gene 11788
Cpgi4307 11 120491617 to 120492638 1021 CpG island CpG island 4307
Slc25a10 11 120491840 to 120499187 7347 + protein coding gene solute carrier family 25 (mitochondrial carrier, dicarboxylate transporter), member 10
Tssr106298 11 120491866 to 120491889 23 + TSS region transcription start site region 106298
Tssr106299 11 120491895 to 120491921 26 + TSS region transcription start site region 106299
Tssr106300 11 120491929 to 120491949 20 + TSS region transcription start site region 106300
Tssr106301 11 120491962 to 120491971 9 + TSS region transcription start site region 106301
Tssr112305 11 120492540 to 120492551 11 - TSS region transcription start site region 112305
Tssr112306 11 120493493 to 120493501 8 - TSS region transcription start site region 112306
Tssr106302 11 120498085 to 120498103 18 + TSS region transcription start site region 106302
Gm39490 11 120506192 to 120508750 2558 + lncRNA gene predicted gene, 39490
Cpgi4308 11 120515523 to 120515870 347 CpG island CpG island 4308
Gm11789 11 120526855 to 120531784 4929 - antisense lncRNA gene predicted gene 11789
Tssr106303 11 120529187 to 120529198 11 + TSS region transcription start site region 106303
Tssr106304 11 120530076 to 120530101 25 + TSS region transcription start site region 106304
Cpgi4309 11 120530091 to 120531306 1215 CpG island CpG island 4309
Tssr106305 11 120530508 to 120530518 10 + TSS region transcription start site region 106305
Tssr106306 11 120530520 to 120530534 14 + TSS region transcription start site region 106306
Tssr106307 11 120530537 to 120530559 22 + TSS region transcription start site region 106307
Tssr106308 11 120530567 to 120530577 10 + TSS region transcription start site region 106308
Tssr112307 11 120530572 to 120530602 30 - TSS region transcription start site region 112307
Tssr106309 11 120530671 to 120530687 16 + TSS region transcription start site region 106309
Tssr106310 11 120530688 to 120530705 17 + TSS region transcription start site region 106310
Gcgr 11 120530699 to 120538986 8287 + protein coding gene glucagon receptor
Tssr106311 11 120530707 to 120530733 26 + TSS region transcription start site region 106311
Tssr106312 11 120530750 to 120530764 14 + TSS region transcription start site region 106312
Tssr106313 11 120530767 to 120530784 17 + TSS region transcription start site region 106313
Tssr112308 11 120531493 to 120531518 25 - TSS region transcription start site region 112308
Tssr112309 11 120531777 to 120531791 14 - TSS region transcription start site region 112309
Tssr106314 11 120534739 to 120534740 1 + TSS region transcription start site region 106314
Mcrip1 11 120542888 to 120549727 6839 - protein coding gene MAPK regulated corepressor interacting protein 1
Cpgi4310 11 120548945 to 120550375 1430 CpG island CpG island 4310
Tssr112310 11 120549695 to 120549728 33 - TSS region transcription start site region 112310
Ppp1r27 11 120549979 to 120551132 1153 - protein coding gene protein phosphatase 1, regulatory subunit 27
Cpgi4311 11 120550797 to 120551146 349 CpG island CpG island 4311
Tssr112311 11 120550937 to 120550963 26 - TSS region transcription start site region 112311
Tssr112312 11 120551126 to 120551138 12 - TSS region transcription start site region 112312
Tssr112313 11 120551147 to 120551158 11 - TSS region transcription start site region 112313
Tssr112314 11 120551216 to 120551225 9 - TSS region transcription start site region 112314