Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:11961676-12739960

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60 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Grb10 11 11930499 to 12037422 106923 - protein coding gene growth factor receptor bound protein 10
2610104F20Rik 11 11958406 to 11967116 8710 - lncRNA gene RIKEN cDNA 2610104F20 gene
Tssr106908 11 11962026 to 11962037 11 - TSS region transcription start site region 106908
Tssr106909 11 11967558 to 11967609 51 - TSS region transcription start site region 106909
Tssr106910 11 11970540 to 11970554 14 - TSS region transcription start site region 106910
Tssr106911 11 12004318 to 12004322 4 - TSS region transcription start site region 106911
Tssr106912 11 12009492 to 12009495 3 - TSS region transcription start site region 106912
Cpgi2586 11 12025419 to 12027039 1620 CpG island CpG island 2586
Tssr106913 11 12025849 to 12025883 34 - TSS region transcription start site region 106913
Tssr106914 11 12026237 to 12026249 12 - TSS region transcription start site region 106914
Tssr106915 11 12026772 to 12026823 51 - TSS region transcription start site region 106915
Tssr106916 11 12027958 to 12027973 15 - TSS region transcription start site region 106916
Tssr106917 11 12028908 to 12028911 3 - TSS region transcription start site region 106917
Tssr3430 11 12035990 to 12036008 18 - TSS region transcription start site region 3430
Cpgi2587 11 12036330 to 12038138 1808 CpG island CpG island 2587
Tssr106918 11 12037349 to 12037360 11 - TSS region transcription start site region 106918
Tssr106919 11 12037391 to 12037407 16 - TSS region transcription start site region 106919
Tssr100394 11 12037644 to 12037659 15 + TSS region transcription start site region 100394
Gm30423 11 12040686 to 12047122 6436 - lncRNA gene predicted gene, 30423
Tssr100395 11 12053934 to 12053938 4 + TSS region transcription start site region 100395
Gm24036 11 12054148 to 12054303 155 - snRNA gene predicted gene, 24036
Tssr106920 11 12054299 to 12054307 8 - TSS region transcription start site region 106920
Gm12001 11 12125090 to 12127998 2908 - pseudogene predicted gene 12001
Cobl 11 12236676 to 12464960 228284 - protein coding gene cordon-bleu WH2 repeat
Gm39581 11 12242309 to 12263293 20984 + lncRNA gene predicted gene, 39581
Tssr106921 11 12309732 to 12309746 14 - TSS region transcription start site region 106921
Tssr106922 11 12309760 to 12309771 11 - TSS region transcription start site region 106922
Gm12002 11 12313365 to 12346088 32723 + antisense lncRNA gene predicted gene 12002
Tssr100396 11 12314509 to 12314529 20 + TSS region transcription start site region 100396
Eae44 11 12318637 to 40060013 27741376 QTL experimental allergic encephalomyelitis susceptibility 44
Scfq3 11 12318637 to 68609504 56290867 QTL subcutaneous fat pad weight QTL 3
Lmrq4 11 12318637 to 69794121 57475484 QTL Leishmania major resistance QTL 4
D11Mit2 11 12318637 to 12318743 106 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 2
W10q2 11 12318637 to 68609504 56290867 QTL weight 10 weeks QTL 2
Egq4 11 12318637 to 68609504 56290867 QTL early growth QTL 4
W3q4 11 12318637 to 68609504 56290867 QTL weight 3 weeks QTL 4
Epfq4 11 12318637 to 68609504 56290867 QTL epididymal fat pad weight QTL 4
Kidpq1 11 12318637 to 68609504 56290867 QTL kidney weight percentage QTL 1
Orq2 11 12318637 to 68609504 56290867 QTL ovulation rate QTL 2
Tailq1 11 12318637 to 68609504 56290867 QTL tail length QTL 1
Lgaq1 11 12318637 to 68609504 56290867 QTL late growth adjusted QTL 1
Lgq1 11 12318637 to 68609504 56290867 QTL late growth QTL 1
W6q3 11 12318637 to 68609504 56290867 QTL weight 6 weeks QTL 3
Tssr106923 11 12354027 to 12354032 5 - TSS region transcription start site region 106923
Gm30596 11 12379434 to 12388976 9542 + lncRNA gene predicted gene, 30596
Tssr106924 11 12412136 to 12412153 17 - TSS region transcription start site region 106924
Tssr106925 11 12428969 to 12428991 22 - TSS region transcription start site region 106925
Tssr106926 11 12429015 to 12429028 13 - TSS region transcription start site region 106926
Cpgi2588 11 12464272 to 12465562 1290 CpG island CpG island 2588
Tssr106927 11 12464746 to 12464759 13 - TSS region transcription start site region 106927
Tssr106928 11 12464819 to 12464845 26 - TSS region transcription start site region 106928
Tssr106929 11 12464850 to 12464879 29 - TSS region transcription start site region 106929
Tssr106930 11 12464881 to 12464997 116 - TSS region transcription start site region 106930
Gm19314 11 12557219 to 12557644 425 - pseudogene predicted gene, 19314
Tssr106931 11 12557809 to 12557822 13 - TSS region transcription start site region 106931
D11Mit204 11 12610927 to 12611067 140 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 204
Gm22156 11 12676933 to 12677073 140 + snoRNA gene predicted gene, 22156
D11Mit150 11 12692718 to 12692908 190 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 150
Gm22789 11 12692813 to 12692942 129 + snoRNA gene predicted gene, 22789
Lvrq7 11 118131898 to 12318637 -105813261 QTL liver weight QTL 7