Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:119472905-120029576

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96 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Rnf213 11 119393100 to 119487418 94318 + protein coding gene ring finger protein 213
A930037H05Rik 11 119448788 to 119491298 42510 - lncRNA gene RIKEN cDNA A930037H05 gene
Tssr106229 11 119476048 to 119476055 7 + TSS region transcription start site region 106229
Tssr106230 11 119486184 to 119486204 20 + TSS region transcription start site region 106230
Tssr106231 11 119486224 to 119486239 15 + TSS region transcription start site region 106231
Tssr106232 11 119486243 to 119486285 42 + TSS region transcription start site region 106232
Tssr106233 11 119486294 to 119486335 41 + TSS region transcription start site region 106233
Tssr106234 11 119486364 to 119486394 30 + TSS region transcription start site region 106234
Tssr106235 11 119486402 to 119486478 76 + TSS region transcription start site region 106235
Tssr106236 11 119486479 to 119486490 11 + TSS region transcription start site region 106236
Tssr106237 11 119486502 to 119486513 11 + TSS region transcription start site region 106237
Tssr106238 11 119489232 to 119489271 39 + TSS region transcription start site region 106238
Cpgi4271 11 119490857 to 119492022 1165 CpG island CpG island 4271
Tssr112229 11 119491229 to 119491264 35 - TSS region transcription start site region 112229
Endov 11 119491347 to 119511437 20090 + protein coding gene endonuclease V
Tssr106239 11 119491359 to 119491405 46 + TSS region transcription start site region 106239
Tssr106240 11 119491618 to 119491660 42 + TSS region transcription start site region 106240
Tssr106241 11 119491662 to 119491679 17 + TSS region transcription start site region 106241
Cpgi4272 11 119514870 to 119515399 529 CpG island CpG island 4272
Gm39484 11 119523173 to 119529735 6562 + lncRNA gene predicted gene, 39484
Cpgi4273 11 119524536 to 119524974 438 CpG island CpG island 4273
Cpgi4274 11 119529398 to 119529619 221 CpG island CpG island 4274
Nptx1 11 119538719 to 119547753 9034 - protein coding gene neuronal pentraxin 1
Tssr112230 11 119541133 to 119541152 19 - TSS region transcription start site region 112230
Tssr112231 11 119541445 to 119541465 20 - TSS region transcription start site region 112231
Cpgi4275 11 119546486 to 119550124 3638 CpG island CpG island 4275
Tssr112232 11 119547744 to 119547759 15 - TSS region transcription start site region 112232
Gm11762 11 119548630 to 119569046 20416 + lncRNA gene predicted gene 11762
Cpgi4276 11 119602785 to 119603900 1115 CpG island CpG island 4276
Rptor 11 119602905 to 119899576 296671 + protein coding gene regulatory associated protein of MTOR, complex 1
Tssr106242 11 119602981 to 119603034 53 + TSS region transcription start site region 106242
Tssr106243 11 119603580 to 119603611 31 + TSS region transcription start site region 106243
Gm11761 11 119646186 to 119646630 444 - pseudogene predicted gene 11761
Tssr106244 11 119671259 to 119671282 23 + TSS region transcription start site region 106244
Tssr106245 11 119671293 to 119671304 11 + TSS region transcription start site region 106245
Tssr106246 11 119675470 to 119675482 12 + TSS region transcription start site region 106246
Tssr112233 11 119676955 to 119676963 8 - TSS region transcription start site region 112233
Tssr106247 11 119680993 to 119681030 37 + TSS region transcription start site region 106247
Tssr106248 11 119724989 to 119725021 32 + TSS region transcription start site region 106248
Tssr106249 11 119729526 to 119729548 22 + TSS region transcription start site region 106249
Tssr106250 11 119729578 to 119729592 14 + TSS region transcription start site region 106250
Gm23663 11 119746401 to 119746480 79 + snoRNA gene predicted gene, 23663
Tssr112234 11 119758451 to 119758452 1 - TSS region transcription start site region 112234
Rptoros 11 119820812 to 119834365 13553 - antisense lncRNA gene regulatory associated protein of MTOR, complex 1, opposite strand
Tssr112235 11 119834347 to 119834360 13 - TSS region transcription start site region 112235
Tssr112236 11 119834408 to 119834421 13 - TSS region transcription start site region 112236
Tssr112237 11 119834461 to 119834488 27 - TSS region transcription start site region 112237
Tssr106251 11 119835578 to 119835601 23 + TSS region transcription start site region 106251
Tssr112238 11 119836911 to 119836953 42 - TSS region transcription start site region 112238
Tssr106252 11 119837265 to 119837307 42 + TSS region transcription start site region 106252
Tssr106253 11 119856200 to 119856215 15 + TSS region transcription start site region 106253
Tssr106254 11 119856237 to 119856253 16 + TSS region transcription start site region 106254
Tssr106255 11 119856257 to 119856268 11 + TSS region transcription start site region 106255
Tssr106256 11 119856277 to 119856301 24 + TSS region transcription start site region 106256
Tssr112239 11 119863410 to 119863457 47 - TSS region transcription start site region 112239
Tssr106257 11 119876004 to 119876017 13 + TSS region transcription start site region 106257
Gm39485 11 119908597 to 119913458 4861 - lncRNA gene predicted gene, 39485
Cpgi4277 11 119913252 to 119914525 1273 CpG island CpG island 4277
Tssr106258 11 119913423 to 119913434 11 + TSS region transcription start site region 106258
Chmp6 11 119913446 to 119919552 6106 + protein coding gene charged multivesicular body protein 6
Tssr106259 11 119913802 to 119913854 52 + TSS region transcription start site region 106259
Tssr106260 11 119916303 to 119916337 34 + TSS region transcription start site region 106260
Tssr106261 11 119916647 to 119916683 36 + TSS region transcription start site region 106261
Tssr3753 11 119916696 to 119916707 11 + TSS region transcription start site region 3753
Tssr112240 11 119917181 to 119917206 25 - TSS region transcription start site region 112240
Cpgi4278 11 119928332 to 119928630 298 CpG island CpG island 4278
Tssr106262 11 119928601 to 119928614 13 + TSS region transcription start site region 106262
2900060N18Rik 11 119933009 to 119933534 525 unclassified gene RIKEN cDNA 2900060N18 gene
Gm11767 11 119935803 to 119942698 6895 - antisense lncRNA gene predicted gene 11767
Tssr112241 11 119937427 to 119937444 17 - TSS region transcription start site region 112241
Tssr112242 11 119937446 to 119937466 20 - TSS region transcription start site region 112242
Tssr112243 11 119937807 to 119937818 11 - TSS region transcription start site region 112243
Gm11766 11 119938511 to 119942074 3563 + lincRNA gene predicted gene 11766
Cpgi4279 11 119942160 to 119943866 1706 CpG island CpG island 4279
Tssr112244 11 119942662 to 119942676 14 - TSS region transcription start site region 112244
Baiap2 11 119942768 to 120006782 64014 + protein coding gene brain-specific angiogenesis inhibitor 1-associated protein 2
Tssr106263 11 119943082 to 119943099 17 + TSS region transcription start site region 106263
Tssr112245 11 119943340 to 119943355 15 - TSS region transcription start site region 112245
Tssr106264 11 119996980 to 119997006 26 + TSS region transcription start site region 106264
Tssr106265 11 119999108 to 119999124 16 + TSS region transcription start site region 106265
Aatk 11 120007313 to 120047167 39854 - protein coding gene apoptosis-associated tyrosine kinase
Tssr106266 11 120007322 to 120007324 2 + TSS region transcription start site region 106266
Cpgi4280 11 120009868 to 120010106 238 CpG island CpG island 4280
Cpgi4281 11 120011700 to 120012399 699 CpG island CpG island 4281
Cpgi4282 11 120013278 to 120013735 457 CpG island CpG island 4282
Tssr3754 11 120014387 to 120014400 13 - TSS region transcription start site region 3754
Mir338 11 120014765 to 120014862 97 - miRNA gene microRNA 338
Mir3065 11 120014767 to 120014853 86 + miRNA gene microRNA 3065
Tssr112246 11 120017058 to 120017160 102 - TSS region transcription start site region 112246
Tssr112247 11 120017176 to 120017186 10 - TSS region transcription start site region 112247
Tssr112248 11 120017247 to 120017286 39 - TSS region transcription start site region 112248
Tssr112249 11 120020127 to 120020140 13 - TSS region transcription start site region 112249
Tssr112250 11 120020143 to 120020150 7 - TSS region transcription start site region 112250
Tssr112251 11 120020160 to 120020190 30 - TSS region transcription start site region 112251
Tssr112252 11 120020234 to 120020237 3 - TSS region transcription start site region 112252
Cpgi4283 11 120022862 to 120023083 221 CpG island CpG island 4283