Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:119436257-120276268

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190 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Rnf213 11 119393100 to 119487418 94318 + protein coding gene ring finger protein 213
Tssr106213 11 119436729 to 119436749 20 + TSS region transcription start site region 106213
Tssr106214 11 119436868 to 119436888 20 + TSS region transcription start site region 106214
Tssr106215 11 119440900 to 119440916 16 + TSS region transcription start site region 106215
Tssr106216 11 119441583 to 119441599 16 + TSS region transcription start site region 106216
Tssr106217 11 119442759 to 119442771 12 + TSS region transcription start site region 106217
Tssr106218 11 119444253 to 119444263 10 + TSS region transcription start site region 106218
Tssr106219 11 119447543 to 119447582 39 + TSS region transcription start site region 106219
Tssr106220 11 119448748 to 119448771 23 + TSS region transcription start site region 106220
A930037H05Rik 11 119448788 to 119491298 42510 - lncRNA gene RIKEN cDNA A930037H05 gene
Tssr106221 11 119454089 to 119454097 8 + TSS region transcription start site region 106221
Tssr106222 11 119454584 to 119454625 41 + TSS region transcription start site region 106222
Tssr106223 11 119456940 to 119456951 11 + TSS region transcription start site region 106223
Tssr106224 11 119457256 to 119457274 18 + TSS region transcription start site region 106224
Tssr106225 11 119465115 to 119465148 33 + TSS region transcription start site region 106225
Tssr106226 11 119469026 to 119469041 15 + TSS region transcription start site region 106226
Tssr106227 11 119469054 to 119469068 14 + TSS region transcription start site region 106227
Tssr106228 11 119469164 to 119469210 46 + TSS region transcription start site region 106228
Tssr106229 11 119476048 to 119476055 7 + TSS region transcription start site region 106229
Tssr106230 11 119486184 to 119486204 20 + TSS region transcription start site region 106230
Tssr106231 11 119486224 to 119486239 15 + TSS region transcription start site region 106231
Tssr106232 11 119486243 to 119486285 42 + TSS region transcription start site region 106232
Tssr106233 11 119486294 to 119486335 41 + TSS region transcription start site region 106233
Tssr106234 11 119486364 to 119486394 30 + TSS region transcription start site region 106234
Tssr106235 11 119486402 to 119486478 76 + TSS region transcription start site region 106235
Tssr106236 11 119486479 to 119486490 11 + TSS region transcription start site region 106236
Tssr106237 11 119486502 to 119486513 11 + TSS region transcription start site region 106237
Tssr106238 11 119489232 to 119489271 39 + TSS region transcription start site region 106238
Cpgi4271 11 119490857 to 119492022 1165 CpG island CpG island 4271
Tssr112229 11 119491229 to 119491264 35 - TSS region transcription start site region 112229
Endov 11 119491347 to 119511437 20090 + protein coding gene endonuclease V
Tssr106239 11 119491359 to 119491405 46 + TSS region transcription start site region 106239
Tssr106240 11 119491618 to 119491660 42 + TSS region transcription start site region 106240
Tssr106241 11 119491662 to 119491679 17 + TSS region transcription start site region 106241
Cpgi4272 11 119514870 to 119515399 529 CpG island CpG island 4272
Gm39484 11 119523173 to 119529735 6562 + lncRNA gene predicted gene, 39484
Cpgi4273 11 119524536 to 119524974 438 CpG island CpG island 4273
Cpgi4274 11 119529398 to 119529619 221 CpG island CpG island 4274
Nptx1 11 119538719 to 119547753 9034 - protein coding gene neuronal pentraxin 1
Tssr112230 11 119541133 to 119541152 19 - TSS region transcription start site region 112230
Tssr112231 11 119541445 to 119541465 20 - TSS region transcription start site region 112231
Cpgi4275 11 119546486 to 119550124 3638 CpG island CpG island 4275
Tssr112232 11 119547744 to 119547759 15 - TSS region transcription start site region 112232
Gm11762 11 119548630 to 119569046 20416 + lncRNA gene predicted gene 11762
Cpgi4276 11 119602785 to 119603900 1115 CpG island CpG island 4276
Rptor 11 119602905 to 119899576 296671 + protein coding gene regulatory associated protein of MTOR, complex 1
Tssr106242 11 119602981 to 119603034 53 + TSS region transcription start site region 106242
Tssr106243 11 119603580 to 119603611 31 + TSS region transcription start site region 106243
Gm11761 11 119646186 to 119646630 444 - pseudogene predicted gene 11761
Tssr106244 11 119671259 to 119671282 23 + TSS region transcription start site region 106244
Tssr106245 11 119671293 to 119671304 11 + TSS region transcription start site region 106245
Tssr106246 11 119675470 to 119675482 12 + TSS region transcription start site region 106246
Tssr112233 11 119676955 to 119676963 8 - TSS region transcription start site region 112233
Tssr106247 11 119680993 to 119681030 37 + TSS region transcription start site region 106247
Tssr106248 11 119724989 to 119725021 32 + TSS region transcription start site region 106248
Tssr106249 11 119729526 to 119729548 22 + TSS region transcription start site region 106249
Tssr106250 11 119729578 to 119729592 14 + TSS region transcription start site region 106250
Gm23663 11 119746401 to 119746480 79 + snoRNA gene predicted gene, 23663
Tssr112234 11 119758451 to 119758452 1 - TSS region transcription start site region 112234
Rptoros 11 119820812 to 119834365 13553 - antisense lncRNA gene regulatory associated protein of MTOR, complex 1, opposite strand
Tssr112235 11 119834347 to 119834360 13 - TSS region transcription start site region 112235
Tssr112236 11 119834408 to 119834421 13 - TSS region transcription start site region 112236
Tssr112237 11 119834461 to 119834488 27 - TSS region transcription start site region 112237
Tssr106251 11 119835578 to 119835601 23 + TSS region transcription start site region 106251
Tssr112238 11 119836911 to 119836953 42 - TSS region transcription start site region 112238
Tssr106252 11 119837265 to 119837307 42 + TSS region transcription start site region 106252
Tssr106253 11 119856200 to 119856215 15 + TSS region transcription start site region 106253
Tssr106254 11 119856237 to 119856253 16 + TSS region transcription start site region 106254
Tssr106255 11 119856257 to 119856268 11 + TSS region transcription start site region 106255
Tssr106256 11 119856277 to 119856301 24 + TSS region transcription start site region 106256
Tssr112239 11 119863410 to 119863457 47 - TSS region transcription start site region 112239
Tssr106257 11 119876004 to 119876017 13 + TSS region transcription start site region 106257
Gm39485 11 119908597 to 119913458 4861 - lncRNA gene predicted gene, 39485
Cpgi4277 11 119913252 to 119914525 1273 CpG island CpG island 4277
Tssr106258 11 119913423 to 119913434 11 + TSS region transcription start site region 106258
Chmp6 11 119913446 to 119919552 6106 + protein coding gene charged multivesicular body protein 6
Tssr106259 11 119913802 to 119913854 52 + TSS region transcription start site region 106259
Tssr106260 11 119916303 to 119916337 34 + TSS region transcription start site region 106260
Tssr106261 11 119916647 to 119916683 36 + TSS region transcription start site region 106261
Tssr3753 11 119916696 to 119916707 11 + TSS region transcription start site region 3753
Tssr112240 11 119917181 to 119917206 25 - TSS region transcription start site region 112240
Cpgi4278 11 119928332 to 119928630 298 CpG island CpG island 4278
Tssr106262 11 119928601 to 119928614 13 + TSS region transcription start site region 106262
2900060N18Rik 11 119933009 to 119933534 525 unclassified gene RIKEN cDNA 2900060N18 gene
Gm11767 11 119935803 to 119942698 6895 - antisense lncRNA gene predicted gene 11767
Tssr112241 11 119937427 to 119937444 17 - TSS region transcription start site region 112241
Tssr112242 11 119937446 to 119937466 20 - TSS region transcription start site region 112242
Tssr112243 11 119937807 to 119937818 11 - TSS region transcription start site region 112243
Gm11766 11 119938511 to 119942074 3563 + lincRNA gene predicted gene 11766
Cpgi4279 11 119942160 to 119943866 1706 CpG island CpG island 4279
Tssr112244 11 119942662 to 119942676 14 - TSS region transcription start site region 112244
Baiap2 11 119942768 to 120006782 64014 + protein coding gene brain-specific angiogenesis inhibitor 1-associated protein 2
Tssr106263 11 119943082 to 119943099 17 + TSS region transcription start site region 106263
Tssr112245 11 119943340 to 119943355 15 - TSS region transcription start site region 112245
Tssr106264 11 119996980 to 119997006 26 + TSS region transcription start site region 106264
Tssr106265 11 119999108 to 119999124 16 + TSS region transcription start site region 106265
Aatk 11 120007313 to 120047167 39854 - protein coding gene apoptosis-associated tyrosine kinase
Tssr106266 11 120007322 to 120007324 2 + TSS region transcription start site region 106266
Cpgi4280 11 120009868 to 120010106 238 CpG island CpG island 4280
Cpgi4281 11 120011700 to 120012399 699 CpG island CpG island 4281
Cpgi4282 11 120013278 to 120013735 457 CpG island CpG island 4282
Tssr3754 11 120014387 to 120014400 13 - TSS region transcription start site region 3754
Mir338 11 120014765 to 120014862 97 - miRNA gene microRNA 338
Mir3065 11 120014767 to 120014853 86 + miRNA gene microRNA 3065
Tssr112246 11 120017058 to 120017160 102 - TSS region transcription start site region 112246
Tssr112247 11 120017176 to 120017186 10 - TSS region transcription start site region 112247
Tssr112248 11 120017247 to 120017286 39 - TSS region transcription start site region 112248
Tssr112249 11 120020127 to 120020140 13 - TSS region transcription start site region 112249
Tssr112250 11 120020143 to 120020150 7 - TSS region transcription start site region 112250
Tssr112251 11 120020160 to 120020190 30 - TSS region transcription start site region 112251
Tssr112252 11 120020234 to 120020237 3 - TSS region transcription start site region 112252
Cpgi4283 11 120022862 to 120023083 221 CpG island CpG island 4283
Tssr106267 11 120041068 to 120041070 2 + TSS region transcription start site region 106267
Tssr3755 11 120041733 to 120041744 11 - TSS region transcription start site region 3755
Tssr112253 11 120041750 to 120041767 17 - TSS region transcription start site region 112253
Tssr112254 11 120041774 to 120041790 16 - TSS region transcription start site region 112254
Cpgi4284 11 120046210 to 120048645 2435 CpG island CpG island 4284
Tssr112255 11 120047031 to 120047061 30 - TSS region transcription start site region 112255
Tssr112256 11 120047072 to 120047129 57 - TSS region transcription start site region 112256
Tssr112257 11 120047144 to 120047193 49 - TSS region transcription start site region 112257
Gm47846 11 120059101 to 120059367 266 + pseudogene predicted gene, 47846
Cep131 11 120064430 to 120086827 22397 - protein coding gene centrosomal protein 131
Gm25948 11 120068127 to 120068238 111 - miRNA gene predicted gene, 25948
Tssr112258 11 120070546 to 120070552 6 - TSS region transcription start site region 112258
Tssr112259 11 120070563 to 120070574 11 - TSS region transcription start site region 112259
Tssr112260 11 120070588 to 120070595 7 - TSS region transcription start site region 112260
Tssr112261 11 120070669 to 120070686 17 - TSS region transcription start site region 112261
Cpgi4285 11 120086065 to 120087405 1340 CpG island CpG island 4285
Tssr112262 11 120086768 to 120086780 12 - TSS region transcription start site region 112262
Tssr112263 11 120086790 to 120086852 62 - TSS region transcription start site region 112263
Tepsin 11 120090531 to 120098731 8200 - protein coding gene TEPSIN, adaptor related protein complex 4 accessory protein
Cpgi4286 11 120098316 to 120099669 1353 CpG island CpG island 4286
Tssr112264 11 120098673 to 120098702 29 - TSS region transcription start site region 112264
Tssr106268 11 120098910 to 120098983 73 + TSS region transcription start site region 106268
Ndufaf8 11 120098934 to 120100424 1490 + protein coding gene NADH:ubiquinone oxidoreductase complex assembly factor 8
Tssr112265 11 120099418 to 120099467 49 - TSS region transcription start site region 112265
Slc38a10 11 120103960 to 120151346 47386 - protein coding gene solute carrier family 38, member 10
Cpgi4287 11 120122328 to 120122493 165 CpG island CpG island 4287
Tssr112266 11 120136698 to 120136707 9 - TSS region transcription start site region 112266
Tssr112267 11 120139407 to 120139422 15 - TSS region transcription start site region 112267
Tssr112268 11 120139427 to 120139432 5 - TSS region transcription start site region 112268
Tssr112269 11 120139436 to 120139448 12 - TSS region transcription start site region 112269
Tssr112270 11 120139449 to 120139451 2 - TSS region transcription start site region 112270
Tssr112271 11 120139495 to 120139496 1 - TSS region transcription start site region 112271
Tssr112272 11 120142890 to 120142891 1 - TSS region transcription start site region 112272
Tssr106269 11 120145128 to 120145130 2 + TSS region transcription start site region 106269
D11Mit293 11 120149142 to 120149254 112 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 293
Tssr106270 11 120150528 to 120150567 39 + TSS region transcription start site region 106270
Cpgi4288 11 120150544 to 120151561 1017 CpG island CpG island 4288
Gm11769 11 120150562 to 120152341 1779 + lncRNA gene predicted gene 11769
Tssr112273 11 120151194 to 120151354 160 - TSS region transcription start site region 112273
Gm39486 11 120157590 to 120164239 6649 - lncRNA gene predicted gene, 39486
Tssr112274 11 120164657 to 120164659 2 - TSS region transcription start site region 112274
Tssr106271 11 120164774 to 120164792 18 + TSS region transcription start site region 106271
Gm9734 11 120183640 to 120186828 3188 + unclassified gene predicted gene 9734
Cpgi4289 11 120185344 to 120186143 799 CpG island CpG island 4289
2810410L24Rik 11 120186650 to 120189856 3206 - lncRNA gene RIKEN cDNA 2810410L24 gene
Cpgi4290 11 120188116 to 120188355 239 CpG island CpG island 4290
Cpgi4291 11 120189212 to 120190282 1070 CpG island CpG island 4291
Tssr112275 11 120189863 to 120189939 76 - TSS region transcription start site region 112275
Gm11770 11 120215082 to 120216993 1911 - antisense lncRNA gene predicted gene 11770
Tssr112276 11 120216631 to 120216642 11 - TSS region transcription start site region 112276
Tssr106272 11 120217239 to 120217247 8 + TSS region transcription start site region 106272
2900052L18Rik 11 120229802 to 120231585 1783 - lncRNA gene RIKEN cDNA 2900052L18 gene
Cpgi4292 11 120230063 to 120230514 451 CpG island CpG island 4292
Tssr106273 11 120230075 to 120230098 23 + TSS region transcription start site region 106273
Cpgi4293 11 120230517 to 120231763 1246 CpG island CpG island 4293
Tssr112277 11 120231465 to 120231477 12 - TSS region transcription start site region 112277
Tssr112278 11 120231517 to 120231541 24 - TSS region transcription start site region 112278
Tssr112279 11 120231578 to 120231607 29 - TSS region transcription start site region 112279
Tssr112280 11 120231628 to 120231639 11 - TSS region transcription start site region 112280
Cpgi4294 11 120232607 to 120233042 435 CpG island CpG island 4294
Tssr106274 11 120232902 to 120232918 16 + TSS region transcription start site region 106274
Tssr106275 11 120232921 to 120232952 31 + TSS region transcription start site region 106275
Bahcc1 11 120232947 to 120292296 59349 + protein coding gene BAH domain and coiled-coil containing 1
Tssr106276 11 120232958 to 120232980 22 + TSS region transcription start site region 106276
Cpgi4295 11 120233392 to 120235157 1765 CpG island CpG island 4295
Tssr106277 11 120233928 to 120233975 47 + TSS region transcription start site region 106277
Tssr112281 11 120235073 to 120235080 7 - TSS region transcription start site region 112281
Gm11772 11 120235234 to 120236122 888 - antisense lncRNA gene predicted gene 11772
Cpgi4296 11 120235570 to 120238168 2598 CpG island CpG island 4296
Tssr112282 11 120235868 to 120235899 31 - TSS region transcription start site region 112282
Tssr112283 11 120236052 to 120236058 6 - TSS region transcription start site region 112283
Tssr106278 11 120236493 to 120236524 31 + TSS region transcription start site region 106278
Tssr112284 11 120237309 to 120237335 26 - TSS region transcription start site region 112284
Tssr112285 11 120237356 to 120237367 11 - TSS region transcription start site region 112285
Tssr112286 11 120237600 to 120237646 46 - TSS region transcription start site region 112286
Tssr106279 11 120253044 to 120253063 19 + TSS region transcription start site region 106279
Cpgi4297 11 120261485 to 120261649 164 CpG island CpG island 4297
Gm47297 11 120274487 to 120274624 137 + miRNA gene predicted gene, 47297