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Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:119236662-119746679

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135 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ccdc40 11 119228572 to 119265236 36664 + protein coding gene coiled-coil domain containing 40
Gm35932 11 119252011 to 119253256 1245 - lncRNA gene predicted gene, 35932
Tssr112215 11 119252289 to 119252319 30 - TSS region transcription start site region 112215
Tssr112216 11 119252488 to 119252508 20 - TSS region transcription start site region 112216
Cpgi4263 11 119253267 to 119253613 346 CpG island CpG island 4263
Gm46303 11 119256916 to 119259163 2247 - lncRNA gene predicted gene, 46303
Tssr106169 11 119258947 to 119258960 13 + TSS region transcription start site region 106169
Cpgi4264 11 119259080 to 119259238 158 CpG island CpG island 4264
Cpgi4265 11 119267654 to 119268648 994 CpG island CpG island 4265
Tssr106170 11 119267957 to 119267968 11 + TSS region transcription start site region 106170
Gaa 11 119267963 to 119285458 17495 + protein coding gene glucosidase, alpha, acid
Tssr106171 11 119268004 to 119268099 95 + TSS region transcription start site region 106171
Tssr106172 11 119270165 to 119270182 17 + TSS region transcription start site region 106172
Tssr106173 11 119270227 to 119270242 15 + TSS region transcription start site region 106173
Tssr106174 11 119274880 to 119274911 31 + TSS region transcription start site region 106174
Gm39483 11 119286837 to 119287582 745 - lncRNA gene predicted gene, 39483
Eif4a3 11 119288363 to 119300043 11680 - protein coding gene eukaryotic translation initiation factor 4A3
Tssr112217 11 119299129 to 119299132 3 - TSS region transcription start site region 112217
Cpgi4266 11 119299389 to 119300774 1385 CpG island CpG island 4266
Tssr112218 11 119300004 to 119300034 30 - TSS region transcription start site region 112218
Tssr112219 11 119300039 to 119300064 25 - TSS region transcription start site region 112219
Tssr112220 11 119300070 to 119300088 18 - TSS region transcription start site region 112220
Tssr106175 11 119300187 to 119300203 16 + TSS region transcription start site region 106175
Cpgi4267 11 119305048 to 119305219 171 CpG island CpG island 4267
Tssr106176 11 119307764 to 119307769 5 + TSS region transcription start site region 106176
Card14 11 119307768 to 119345375 37607 + protein coding gene caspase recruitment domain family, member 14
D11Mit104 11 119308316 to 119308474 158 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 104
Tssr106177 11 119314827 to 119314859 32 + TSS region transcription start site region 106177
Tssr106178 11 119316978 to 119317009 31 + TSS region transcription start site region 106178
Tssr106179 11 119317058 to 119317066 8 + TSS region transcription start site region 106179
Sgsh 11 119343489 to 119355510 12021 - protein coding gene N-sulfoglucosamine sulfohydrolase (sulfamidase)
Tssr112221 11 119346827 to 119346845 18 - TSS region transcription start site region 112221
Tssr112222 11 119347904 to 119347917 13 - TSS region transcription start site region 112222
Tssr112223 11 119347946 to 119347962 16 - TSS region transcription start site region 112223
Cpgi4268 11 119354895 to 119355976 1081 CpG island CpG island 4268
Tssr106180 11 119355034 to 119355089 55 + TSS region transcription start site region 106180
Tssr112224 11 119355484 to 119355526 42 - TSS region transcription start site region 112224
Tssr106181 11 119355551 to 119355612 61 + TSS region transcription start site region 106181
Slc26a11 11 119355557 to 119381079 25522 + protein coding gene solute carrier family 26, member 11
Tssr106182 11 119375861 to 119375890 29 + TSS region transcription start site region 106182
Tssr106183 11 119375899 to 119375938 39 + TSS region transcription start site region 106183
Cpgi4269 11 119389830 to 119391094 1264 CpG island CpG island 4269
Tssr106184 11 119389939 to 119389959 20 + TSS region transcription start site region 106184
Tssr106185 11 119389974 to 119389985 11 + TSS region transcription start site region 106185
Tssr106186 11 119390058 to 119390104 46 + TSS region transcription start site region 106186
Tssr106187 11 119390463 to 119390490 27 + TSS region transcription start site region 106187
Mir1932 11 119390472 to 119390561 89 + miRNA gene microRNA 1932
Tssr106188 11 119390506 to 119390522 16 + TSS region transcription start site region 106188
Tssr106189 11 119390638 to 119390663 25 + TSS region transcription start site region 106189
Tssr106190 11 119390667 to 119390683 16 + TSS region transcription start site region 106190
Tssr112225 11 119391082 to 119391101 19 - TSS region transcription start site region 112225
Tssr112226 11 119392110 to 119392123 13 - TSS region transcription start site region 112226
Tssr106191 11 119392255 to 119392269 14 + TSS region transcription start site region 106191
Tssr106192 11 119392278 to 119392293 15 + TSS region transcription start site region 106192
Tssr112227 11 119392778 to 119392786 8 - TSS region transcription start site region 112227
Tssr106193 11 119392946 to 119392958 12 + TSS region transcription start site region 106193
Tssr106194 11 119393011 to 119393018 7 + TSS region transcription start site region 106194
Tssr106195 11 119393060 to 119393083 23 + TSS region transcription start site region 106195
Rnf213 11 119393100 to 119487418 94318 + protein coding gene ring finger protein 213
Tssr106196 11 119393391 to 119393425 34 + TSS region transcription start site region 106196
Tssr106197 11 119397935 to 119397956 21 + TSS region transcription start site region 106197
Tssr106198 11 119403663 to 119403671 8 + TSS region transcription start site region 106198
Tssr112228 11 119408896 to 119408939 43 - TSS region transcription start site region 112228
Tssr106199 11 119410194 to 119410206 12 + TSS region transcription start site region 106199
Tssr106200 11 119415726 to 119415733 7 + TSS region transcription start site region 106200
Tssr106201 11 119418238 to 119418256 18 + TSS region transcription start site region 106201
Tssr106202 11 119422440 to 119422478 38 + TSS region transcription start site region 106202
Tssr106203 11 119423084 to 119423102 18 + TSS region transcription start site region 106203
Tssr106204 11 119423394 to 119423398 4 + TSS region transcription start site region 106204
Tssr106205 11 119426008 to 119426022 14 + TSS region transcription start site region 106205
Tssr106206 11 119426059 to 119426070 11 + TSS region transcription start site region 106206
Tssr106207 11 119426090 to 119426099 9 + TSS region transcription start site region 106207
Tssr106208 11 119428009 to 119428030 21 + TSS region transcription start site region 106208
Tssr106209 11 119428067 to 119428088 21 + TSS region transcription start site region 106209
Cpgi4270 11 119428464 to 119429202 738 CpG island CpG island 4270
Tssr106210 11 119430258 to 119430277 19 + TSS region transcription start site region 106210
Tssr106211 11 119430282 to 119430294 12 + TSS region transcription start site region 106211
Tssr106212 11 119434747 to 119434795 48 + TSS region transcription start site region 106212
Tssr106213 11 119436729 to 119436749 20 + TSS region transcription start site region 106213
Tssr106214 11 119436868 to 119436888 20 + TSS region transcription start site region 106214
Tssr106215 11 119440900 to 119440916 16 + TSS region transcription start site region 106215
Tssr106216 11 119441583 to 119441599 16 + TSS region transcription start site region 106216
Tssr106217 11 119442759 to 119442771 12 + TSS region transcription start site region 106217
Tssr106218 11 119444253 to 119444263 10 + TSS region transcription start site region 106218
Tssr106219 11 119447543 to 119447582 39 + TSS region transcription start site region 106219
Tssr106220 11 119448748 to 119448771 23 + TSS region transcription start site region 106220
A930037H05Rik 11 119448788 to 119491298 42510 - lncRNA gene RIKEN cDNA A930037H05 gene
Tssr106221 11 119454089 to 119454097 8 + TSS region transcription start site region 106221
Tssr106222 11 119454584 to 119454625 41 + TSS region transcription start site region 106222
Tssr106223 11 119456940 to 119456951 11 + TSS region transcription start site region 106223
Tssr106224 11 119457256 to 119457274 18 + TSS region transcription start site region 106224
Tssr106225 11 119465115 to 119465148 33 + TSS region transcription start site region 106225
Tssr106226 11 119469026 to 119469041 15 + TSS region transcription start site region 106226
Tssr106227 11 119469054 to 119469068 14 + TSS region transcription start site region 106227
Tssr106228 11 119469164 to 119469210 46 + TSS region transcription start site region 106228
Tssr106229 11 119476048 to 119476055 7 + TSS region transcription start site region 106229
Tssr106230 11 119486184 to 119486204 20 + TSS region transcription start site region 106230
Tssr106231 11 119486224 to 119486239 15 + TSS region transcription start site region 106231
Tssr106232 11 119486243 to 119486285 42 + TSS region transcription start site region 106232
Tssr106233 11 119486294 to 119486335 41 + TSS region transcription start site region 106233
Tssr106234 11 119486364 to 119486394 30 + TSS region transcription start site region 106234
Tssr106235 11 119486402 to 119486478 76 + TSS region transcription start site region 106235
Tssr106236 11 119486479 to 119486490 11 + TSS region transcription start site region 106236
Tssr106237 11 119486502 to 119486513 11 + TSS region transcription start site region 106237
Tssr106238 11 119489232 to 119489271 39 + TSS region transcription start site region 106238
Cpgi4271 11 119490857 to 119492022 1165 CpG island CpG island 4271
Tssr112229 11 119491229 to 119491264 35 - TSS region transcription start site region 112229
Endov 11 119491347 to 119511437 20090 + protein coding gene endonuclease V
Tssr106239 11 119491359 to 119491405 46 + TSS region transcription start site region 106239
Tssr106240 11 119491618 to 119491660 42 + TSS region transcription start site region 106240
Tssr106241 11 119491662 to 119491679 17 + TSS region transcription start site region 106241
Cpgi4272 11 119514870 to 119515399 529 CpG island CpG island 4272
Gm39484 11 119523173 to 119529735 6562 + lncRNA gene predicted gene, 39484
Cpgi4273 11 119524536 to 119524974 438 CpG island CpG island 4273
Cpgi4274 11 119529398 to 119529619 221 CpG island CpG island 4274
Nptx1 11 119538719 to 119547753 9034 - protein coding gene neuronal pentraxin 1
Tssr112230 11 119541133 to 119541152 19 - TSS region transcription start site region 112230
Tssr112231 11 119541445 to 119541465 20 - TSS region transcription start site region 112231
Cpgi4275 11 119546486 to 119550124 3638 CpG island CpG island 4275
Tssr112232 11 119547744 to 119547759 15 - TSS region transcription start site region 112232
Gm11762 11 119548630 to 119569046 20416 + lncRNA gene predicted gene 11762
Cpgi4276 11 119602785 to 119603900 1115 CpG island CpG island 4276
Rptor 11 119602905 to 119899576 296671 + protein coding gene regulatory associated protein of MTOR, complex 1
Tssr106242 11 119602981 to 119603034 53 + TSS region transcription start site region 106242
Tssr106243 11 119603580 to 119603611 31 + TSS region transcription start site region 106243
Gm11761 11 119646186 to 119646630 444 - pseudogene predicted gene 11761
Tssr106244 11 119671259 to 119671282 23 + TSS region transcription start site region 106244
Tssr106245 11 119671293 to 119671304 11 + TSS region transcription start site region 106245
Tssr106246 11 119675470 to 119675482 12 + TSS region transcription start site region 106246
Tssr112233 11 119676955 to 119676963 8 - TSS region transcription start site region 112233
Tssr106247 11 119680993 to 119681030 37 + TSS region transcription start site region 106247
Tssr106248 11 119724989 to 119725021 32 + TSS region transcription start site region 106248
Tssr106249 11 119729526 to 119729548 22 + TSS region transcription start site region 106249
Tssr106250 11 119729578 to 119729592 14 + TSS region transcription start site region 106250
Gm23663 11 119746401 to 119746480 79 + snoRNA gene predicted gene, 23663