Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:119176837-119397582

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74 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tbc1d16 11 119143045 to 119228499 85454 - protein coding gene TBC1 domain family, member 16
Gm11753 11 119183953 to 119184516 563 - sense intronic lncRNA gene predicted gene 11753
Tssr112212 11 119186499 to 119186548 49 - TSS region transcription start site region 112212
Gm36111 11 119192041 to 119192395 354 + lncRNA gene predicted gene, 36111
Cpgi4258 11 119198626 to 119198906 280 CpG island CpG island 4258
D11Mit342 11 119204342 to 119204460 118 DNA segment DNA Segment, Chr 11, Massachusetts Institute of Technology-342
Cpgi4259 11 119208826 to 119209283 457 CpG island CpG island 4259
Cpgi4260 11 119210538 to 119211010 472 CpG island CpG island 4260
Cpgi4261 11 119215304 to 119215679 375 CpG island CpG island 4261
Gm11752 11 119220160 to 119222473 2313 + lincRNA gene predicted gene 11752
Cpgi4262 11 119227938 to 119229275 1337 CpG island CpG island 4262
Tssr112213 11 119228456 to 119228459 3 - TSS region transcription start site region 112213
Tssr112214 11 119228461 to 119228504 43 - TSS region transcription start site region 112214
Ccdc40 11 119228572 to 119265236 36664 + protein coding gene coiled-coil domain containing 40
Tssr106168 11 119229092 to 119229131 39 + TSS region transcription start site region 106168
Gm35932 11 119252011 to 119253256 1245 - lncRNA gene predicted gene, 35932
Tssr112215 11 119252289 to 119252319 30 - TSS region transcription start site region 112215
Tssr112216 11 119252488 to 119252508 20 - TSS region transcription start site region 112216
Cpgi4263 11 119253267 to 119253613 346 CpG island CpG island 4263
Gm46303 11 119256916 to 119259163 2247 - lncRNA gene predicted gene, 46303
Tssr106169 11 119258947 to 119258960 13 + TSS region transcription start site region 106169
Cpgi4264 11 119259080 to 119259238 158 CpG island CpG island 4264
Cpgi4265 11 119267654 to 119268648 994 CpG island CpG island 4265
Tssr106170 11 119267957 to 119267968 11 + TSS region transcription start site region 106170
Gaa 11 119267963 to 119285458 17495 + protein coding gene glucosidase, alpha, acid
Tssr106171 11 119268004 to 119268099 95 + TSS region transcription start site region 106171
Tssr106172 11 119270165 to 119270182 17 + TSS region transcription start site region 106172
Tssr106173 11 119270227 to 119270242 15 + TSS region transcription start site region 106173
Tssr106174 11 119274880 to 119274911 31 + TSS region transcription start site region 106174
Gm39483 11 119286837 to 119287582 745 - lncRNA gene predicted gene, 39483
Eif4a3 11 119288363 to 119300043 11680 - protein coding gene eukaryotic translation initiation factor 4A3
Tssr112217 11 119299129 to 119299132 3 - TSS region transcription start site region 112217
Cpgi4266 11 119299389 to 119300774 1385 CpG island CpG island 4266
Tssr112218 11 119300004 to 119300034 30 - TSS region transcription start site region 112218
Tssr112219 11 119300039 to 119300064 25 - TSS region transcription start site region 112219
Tssr112220 11 119300070 to 119300088 18 - TSS region transcription start site region 112220
Tssr106175 11 119300187 to 119300203 16 + TSS region transcription start site region 106175
Cpgi4267 11 119305048 to 119305219 171 CpG island CpG island 4267
Tssr106176 11 119307764 to 119307769 5 + TSS region transcription start site region 106176
Card14 11 119307768 to 119345375 37607 + protein coding gene caspase recruitment domain family, member 14
D11Mit104 11 119308316 to 119308474 158 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 104
Tssr106177 11 119314827 to 119314859 32 + TSS region transcription start site region 106177
Tssr106178 11 119316978 to 119317009 31 + TSS region transcription start site region 106178
Tssr106179 11 119317058 to 119317066 8 + TSS region transcription start site region 106179
Sgsh 11 119343489 to 119355510 12021 - protein coding gene N-sulfoglucosamine sulfohydrolase (sulfamidase)
Tssr112221 11 119346827 to 119346845 18 - TSS region transcription start site region 112221
Tssr112222 11 119347904 to 119347917 13 - TSS region transcription start site region 112222
Tssr112223 11 119347946 to 119347962 16 - TSS region transcription start site region 112223
Cpgi4268 11 119354895 to 119355976 1081 CpG island CpG island 4268
Tssr106180 11 119355034 to 119355089 55 + TSS region transcription start site region 106180
Tssr112224 11 119355484 to 119355526 42 - TSS region transcription start site region 112224
Tssr106181 11 119355551 to 119355612 61 + TSS region transcription start site region 106181
Slc26a11 11 119355557 to 119381079 25522 + protein coding gene solute carrier family 26, member 11
Tssr106182 11 119375861 to 119375890 29 + TSS region transcription start site region 106182
Tssr106183 11 119375899 to 119375938 39 + TSS region transcription start site region 106183
Cpgi4269 11 119389830 to 119391094 1264 CpG island CpG island 4269
Tssr106184 11 119389939 to 119389959 20 + TSS region transcription start site region 106184
Tssr106185 11 119389974 to 119389985 11 + TSS region transcription start site region 106185
Tssr106186 11 119390058 to 119390104 46 + TSS region transcription start site region 106186
Tssr106187 11 119390463 to 119390490 27 + TSS region transcription start site region 106187
Mir1932 11 119390472 to 119390561 89 + miRNA gene microRNA 1932
Tssr106188 11 119390506 to 119390522 16 + TSS region transcription start site region 106188
Tssr106189 11 119390638 to 119390663 25 + TSS region transcription start site region 106189
Tssr106190 11 119390667 to 119390683 16 + TSS region transcription start site region 106190
Tssr112225 11 119391082 to 119391101 19 - TSS region transcription start site region 112225
Tssr112226 11 119392110 to 119392123 13 - TSS region transcription start site region 112226
Tssr106191 11 119392255 to 119392269 14 + TSS region transcription start site region 106191
Tssr106192 11 119392278 to 119392293 15 + TSS region transcription start site region 106192
Tssr112227 11 119392778 to 119392786 8 - TSS region transcription start site region 112227
Tssr106193 11 119392946 to 119392958 12 + TSS region transcription start site region 106193
Tssr106194 11 119393011 to 119393018 7 + TSS region transcription start site region 106194
Tssr106195 11 119393060 to 119393083 23 + TSS region transcription start site region 106195
Rnf213 11 119393100 to 119487418 94318 + protein coding gene ring finger protein 213
Tssr106196 11 119393391 to 119393425 34 + TSS region transcription start site region 106196