Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:119109342-119299460

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43 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm11754 11 119106328 to 119111425 5097 - lincRNA gene predicted gene 11754
Tssr112208 11 119111400 to 119111439 39 - TSS region transcription start site region 112208
Gm11755 11 119121754 to 119126912 5158 - lincRNA gene predicted gene 11755
Tssr106166 11 119126738 to 119126744 6 + TSS region transcription start site region 106166
Tssr112209 11 119133790 to 119133802 12 - TSS region transcription start site region 112209
Tbc1d16 11 119143045 to 119228499 85454 - protein coding gene TBC1 domain family, member 16
Tssr106167 11 119145119 to 119145123 4 + TSS region transcription start site region 106167
Tssr112210 11 119151259 to 119151293 34 - TSS region transcription start site region 112210
Gm26888 11 119151651 to 119156994 5343 + lincRNA gene predicted gene, 26888
Mir6934 11 119154076 to 119154137 61 - miRNA gene microRNA 6934
Tssr112211 11 119170970 to 119171013 43 - TSS region transcription start site region 112211
Gm11753 11 119183953 to 119184516 563 - sense intronic lncRNA gene predicted gene 11753
Tssr112212 11 119186499 to 119186548 49 - TSS region transcription start site region 112212
Gm36111 11 119192041 to 119192395 354 + lncRNA gene predicted gene, 36111
Cpgi4258 11 119198626 to 119198906 280 CpG island CpG island 4258
D11Mit342 11 119204342 to 119204460 118 DNA segment DNA Segment, Chr 11, Massachusetts Institute of Technology-342
Cpgi4259 11 119208826 to 119209283 457 CpG island CpG island 4259
Cpgi4260 11 119210538 to 119211010 472 CpG island CpG island 4260
Cpgi4261 11 119215304 to 119215679 375 CpG island CpG island 4261
Gm11752 11 119220160 to 119222473 2313 + lincRNA gene predicted gene 11752
Cpgi4262 11 119227938 to 119229275 1337 CpG island CpG island 4262
Tssr112213 11 119228456 to 119228459 3 - TSS region transcription start site region 112213
Tssr112214 11 119228461 to 119228504 43 - TSS region transcription start site region 112214
Ccdc40 11 119228572 to 119265236 36664 + protein coding gene coiled-coil domain containing 40
Tssr106168 11 119229092 to 119229131 39 + TSS region transcription start site region 106168
Gm35932 11 119252011 to 119253256 1245 - lncRNA gene predicted gene, 35932
Tssr112215 11 119252289 to 119252319 30 - TSS region transcription start site region 112215
Tssr112216 11 119252488 to 119252508 20 - TSS region transcription start site region 112216
Cpgi4263 11 119253267 to 119253613 346 CpG island CpG island 4263
Gm46303 11 119256916 to 119259163 2247 - lncRNA gene predicted gene, 46303
Tssr106169 11 119258947 to 119258960 13 + TSS region transcription start site region 106169
Cpgi4264 11 119259080 to 119259238 158 CpG island CpG island 4264
Cpgi4265 11 119267654 to 119268648 994 CpG island CpG island 4265
Tssr106170 11 119267957 to 119267968 11 + TSS region transcription start site region 106170
Gaa 11 119267963 to 119285458 17495 + protein coding gene glucosidase, alpha, acid
Tssr106171 11 119268004 to 119268099 95 + TSS region transcription start site region 106171
Tssr106172 11 119270165 to 119270182 17 + TSS region transcription start site region 106172
Tssr106173 11 119270227 to 119270242 15 + TSS region transcription start site region 106173
Tssr106174 11 119274880 to 119274911 31 + TSS region transcription start site region 106174
Gm39483 11 119286837 to 119287582 745 - lncRNA gene predicted gene, 39483
Eif4a3 11 119288363 to 119300043 11680 - protein coding gene eukaryotic translation initiation factor 4A3
Tssr112217 11 119299129 to 119299132 3 - TSS region transcription start site region 112217
Cpgi4266 11 119299389 to 119300774 1385 CpG island CpG island 4266