Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:118893173-119083192

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40 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Rbfox3 11 118489762 to 118911597 421835 - protein coding gene RNA binding protein, fox-1 homolog (C. elegans) 3
Cpgi4242 11 118907199 to 118910267 3068 CpG island CpG island 4242
Tssr112195 11 118909468 to 118909479 11 - TSS region transcription start site region 112195
Tssr112196 11 118909487 to 118909575 88 - TSS region transcription start site region 112196
Tssr112197 11 118909639 to 118909739 100 - TSS region transcription start site region 112197
Tssr112198 11 118909795 to 118909806 11 - TSS region transcription start site region 112198
Tssr112199 11 118909848 to 118909863 15 - TSS region transcription start site region 112199
Tssr112200 11 118910036 to 118910058 22 - TSS region transcription start site region 112200
Tssr112201 11 118910090 to 118910102 12 - TSS region transcription start site region 112201
Gm35710 11 118947428 to 118983345 35917 - lncRNA gene predicted gene, 35710
Cpgi4243 11 118971570 to 118971738 168 CpG island CpG island 4243
Tssr106158 11 118988173 to 118988192 19 + TSS region transcription start site region 106158
Enpp7 11 118988188 to 118993221 5033 + protein coding gene ectonucleotide pyrophosphatase/phosphodiesterase 7
Tssr3752 11 118992937 to 118992950 13 + TSS region transcription start site region 3752
D11Mit337.2 11 118997645 to 118997768 123 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 337.2
D11Mit337 11 118997798 to 118997911 113 DNA segment DNA Segment, Chr 11, Massachusetts Institute of Technology 337
Cpgi4244 11 118998732 to 118999948 1216 CpG island CpG island 4244
Gm35829 11 119011305 to 119023363 12058 - lncRNA gene predicted gene, 35829
Cpgi4245 11 119022526 to 119023899 1373 CpG island CpG island 4245
Cbx2 11 119023019 to 119031275 8256 + protein coding gene chromobox 2
Tssr106159 11 119023032 to 119023104 72 + TSS region transcription start site region 106159
Cpgi4246 11 119034133 to 119034724 591 CpG island CpG island 4246
Cpgi4247 11 119035370 to 119035758 388 CpG island CpG island 4247
Cbx8 11 119036303 to 119040913 4610 - protein coding gene chromobox 8
Cpgi4248 11 119037113 to 119037719 606 CpG island CpG island 4248
Cpgi4249 11 119040377 to 119043372 2995 CpG island CpG island 4249
Tssr112202 11 119040883 to 119040903 20 - TSS region transcription start site region 112202
Tssr112203 11 119040905 to 119040937 32 - TSS region transcription start site region 112203
Cpgi4250 11 119044792 to 119045420 628 CpG island CpG island 4250
Cpgi4251 11 119046513 to 119048284 1771 CpG island CpG island 4251
Cpgi4252 11 119053037 to 119055385 2348 CpG island CpG island 4252
Tssr112204 11 119053390 to 119053401 11 - TSS region transcription start site region 112204
Tssr112205 11 119053433 to 119053437 4 - TSS region transcription start site region 112205
Tssr106160 11 119053583 to 119053603 20 + TSS region transcription start site region 106160
Cpgi4253 11 119055796 to 119057331 1535 CpG island CpG island 4253
Cpgi4254 11 119058110 to 119059015 905 CpG island CpG island 4254
Cbx4 11 119077573 to 119086221 8648 - protein coding gene chromobox 4
Gm26508 11 119077573 to 119081865 4292 + lincRNA gene predicted gene, 26508
Tssr106161 11 119081373 to 119081415 42 + TSS region transcription start site region 106161
Tssr106162 11 119081724 to 119081743 19 + TSS region transcription start site region 106162