Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:118501113-119281706

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121 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Rbfox3 11 118489762 to 118911597 421835 - protein coding gene RNA binding protein, fox-1 homolog (C. elegans) 3
Cpgi4236 11 118503470 to 118503731 261 CpG island CpG island 4236
Tssr112178 11 118510665 to 118510666 1 - TSS region transcription start site region 112178
Tssr112179 11 118513250 to 118513269 19 - TSS region transcription start site region 112179
Tssr112180 11 118513341 to 118513350 9 - TSS region transcription start site region 112180
Tssr112181 11 118513354 to 118513375 21 - TSS region transcription start site region 112181
Tssr106157 11 118515784 to 118515787 3 + TSS region transcription start site region 106157
Cpgi4237 11 118568658 to 118570906 2248 CpG island CpG island 4237
Tssr112182 11 118569687 to 118569732 45 - TSS region transcription start site region 112182
Tssr112183 11 118569962 to 118570000 38 - TSS region transcription start site region 112183
Tssr112184 11 118570312 to 118570323 11 - TSS region transcription start site region 112184
D11Mit362.1 11 118580857 to 118580966 109 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 362.1
D11Mit362 11 118580971 to 118581076 105 DNA segment DNA Segment, Chr 11 Massachusetts Institute of Technology 362
9530053I22Rik 11 118591561 to 118592514 953 unclassified gene RIKEN cDNA 9530053I22 gene
Cpgi4238 11 118603227 to 118603589 362 CpG island CpG island 4238
Tssr112185 11 118650994 to 118650997 3 - TSS region transcription start site region 112185
Tssr112186 11 118663521 to 118663522 1 - TSS region transcription start site region 112186
Cpgi4239 11 118693028 to 118693341 313 CpG island CpG island 4239
Cpgi4240 11 118744771 to 118745009 238 CpG island CpG island 4240
C230069I12Rik 11 118760933 to 118764489 3556 unclassified gene RIKEN cDNA C230069I12 gene
Gm11750 11 118791372 to 118793828 2456 + lincRNA gene predicted gene 11750
Tssr112187 11 118796739 to 118796753 14 - TSS region transcription start site region 112187
Tssr112188 11 118797713 to 118797724 11 - TSS region transcription start site region 112188
Tssr112189 11 118797730 to 118797746 16 - TSS region transcription start site region 112189
Tssr112190 11 118797764 to 118797774 10 - TSS region transcription start site region 112190
Tssr112191 11 118797979 to 118797989 10 - TSS region transcription start site region 112191
Gm25040 11 118852723 to 118852788 65 - miRNA gene predicted gene, 25040
Gm11749 11 118866257 to 118867220 963 - sense intronic lncRNA gene predicted gene 11749
Tssr112192 11 118868537 to 118868555 18 - TSS region transcription start site region 112192
Tssr112193 11 118868922 to 118868937 15 - TSS region transcription start site region 112193
Tssr112194 11 118869119 to 118869158 39 - TSS region transcription start site region 112194
Tssr3751 11 118869443 to 118869458 15 - TSS region transcription start site region 3751
Cpgi4241 11 118891113 to 118891706 593 CpG island CpG island 4241
Cpgi4242 11 118907199 to 118910267 3068 CpG island CpG island 4242
Tssr112195 11 118909468 to 118909479 11 - TSS region transcription start site region 112195
Tssr112196 11 118909487 to 118909575 88 - TSS region transcription start site region 112196
Tssr112197 11 118909639 to 118909739 100 - TSS region transcription start site region 112197
Tssr112198 11 118909795 to 118909806 11 - TSS region transcription start site region 112198
Tssr112199 11 118909848 to 118909863 15 - TSS region transcription start site region 112199
Tssr112200 11 118910036 to 118910058 22 - TSS region transcription start site region 112200
Tssr112201 11 118910090 to 118910102 12 - TSS region transcription start site region 112201
Gm35710 11 118947428 to 118983345 35917 - lncRNA gene predicted gene, 35710
Cpgi4243 11 118971570 to 118971738 168 CpG island CpG island 4243
Tssr106158 11 118988173 to 118988192 19 + TSS region transcription start site region 106158
Enpp7 11 118988188 to 118993221 5033 + protein coding gene ectonucleotide pyrophosphatase/phosphodiesterase 7
Tssr3752 11 118992937 to 118992950 13 + TSS region transcription start site region 3752
D11Mit337.2 11 118997645 to 118997768 123 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 337.2
D11Mit337 11 118997798 to 118997911 113 DNA segment DNA Segment, Chr 11, Massachusetts Institute of Technology 337
Cpgi4244 11 118998732 to 118999948 1216 CpG island CpG island 4244
Gm35829 11 119011305 to 119023363 12058 - lncRNA gene predicted gene, 35829
Cpgi4245 11 119022526 to 119023899 1373 CpG island CpG island 4245
Cbx2 11 119023019 to 119031275 8256 + protein coding gene chromobox 2
Tssr106159 11 119023032 to 119023104 72 + TSS region transcription start site region 106159
Cpgi4246 11 119034133 to 119034724 591 CpG island CpG island 4246
Cpgi4247 11 119035370 to 119035758 388 CpG island CpG island 4247
Cbx8 11 119036303 to 119040913 4610 - protein coding gene chromobox 8
Cpgi4248 11 119037113 to 119037719 606 CpG island CpG island 4248
Cpgi4249 11 119040377 to 119043372 2995 CpG island CpG island 4249
Tssr112202 11 119040883 to 119040903 20 - TSS region transcription start site region 112202
Tssr112203 11 119040905 to 119040937 32 - TSS region transcription start site region 112203
Cpgi4250 11 119044792 to 119045420 628 CpG island CpG island 4250
Cpgi4251 11 119046513 to 119048284 1771 CpG island CpG island 4251
Cpgi4252 11 119053037 to 119055385 2348 CpG island CpG island 4252
Tssr112204 11 119053390 to 119053401 11 - TSS region transcription start site region 112204
Tssr112205 11 119053433 to 119053437 4 - TSS region transcription start site region 112205
Tssr106160 11 119053583 to 119053603 20 + TSS region transcription start site region 106160
Cpgi4253 11 119055796 to 119057331 1535 CpG island CpG island 4253
Cpgi4254 11 119058110 to 119059015 905 CpG island CpG island 4254
Cbx4 11 119077573 to 119086221 8648 - protein coding gene chromobox 4
Gm26508 11 119077573 to 119081865 4292 + lincRNA gene predicted gene, 26508
Tssr106161 11 119081373 to 119081415 42 + TSS region transcription start site region 106161
Tssr106162 11 119081724 to 119081743 19 + TSS region transcription start site region 106162
Cpgi4255 11 119085404 to 119086801 1397 CpG island CpG island 4255
Tssr112206 11 119086231 to 119086250 19 - TSS region transcription start site region 112206
Tssr112207 11 119086266 to 119086284 18 - TSS region transcription start site region 112207
Tssr106163 11 119086819 to 119086825 6 + TSS region transcription start site region 106163
Cpgi4256 11 119087233 to 119087722 489 CpG island CpG island 4256
Tssr106164 11 119089329 to 119089337 8 + TSS region transcription start site region 106164
Tssr106165 11 119089385 to 119089388 3 + TSS region transcription start site region 106165
Cpgi4257 11 119089421 to 119091492 2071 CpG island CpG island 4257
Gm39482 11 119093141 to 119095754 2613 + lncRNA gene predicted gene, 39482
Gm35878 11 119105842 to 119109081 3239 + lncRNA gene predicted gene, 35878
Gm11754 11 119106328 to 119111425 5097 - lincRNA gene predicted gene 11754
Tssr112208 11 119111400 to 119111439 39 - TSS region transcription start site region 112208
Gm11755 11 119121754 to 119126912 5158 - lincRNA gene predicted gene 11755
Tssr106166 11 119126738 to 119126744 6 + TSS region transcription start site region 106166
Tssr112209 11 119133790 to 119133802 12 - TSS region transcription start site region 112209
Tbc1d16 11 119143045 to 119228499 85454 - protein coding gene TBC1 domain family, member 16
Tssr106167 11 119145119 to 119145123 4 + TSS region transcription start site region 106167
Tssr112210 11 119151259 to 119151293 34 - TSS region transcription start site region 112210
Gm26888 11 119151651 to 119156994 5343 + lincRNA gene predicted gene, 26888
Mir6934 11 119154076 to 119154137 61 - miRNA gene microRNA 6934
Tssr112211 11 119170970 to 119171013 43 - TSS region transcription start site region 112211
Gm11753 11 119183953 to 119184516 563 - sense intronic lncRNA gene predicted gene 11753
Tssr112212 11 119186499 to 119186548 49 - TSS region transcription start site region 112212
Gm36111 11 119192041 to 119192395 354 + lncRNA gene predicted gene, 36111
Cpgi4258 11 119198626 to 119198906 280 CpG island CpG island 4258
D11Mit342 11 119204342 to 119204460 118 DNA segment DNA Segment, Chr 11, Massachusetts Institute of Technology-342
Cpgi4259 11 119208826 to 119209283 457 CpG island CpG island 4259
Cpgi4260 11 119210538 to 119211010 472 CpG island CpG island 4260
Cpgi4261 11 119215304 to 119215679 375 CpG island CpG island 4261
Gm11752 11 119220160 to 119222473 2313 + lincRNA gene predicted gene 11752
Cpgi4262 11 119227938 to 119229275 1337 CpG island CpG island 4262
Tssr112213 11 119228456 to 119228459 3 - TSS region transcription start site region 112213
Tssr112214 11 119228461 to 119228504 43 - TSS region transcription start site region 112214
Ccdc40 11 119228572 to 119265236 36664 + protein coding gene coiled-coil domain containing 40
Tssr106168 11 119229092 to 119229131 39 + TSS region transcription start site region 106168
Gm35932 11 119252011 to 119253256 1245 - lncRNA gene predicted gene, 35932
Tssr112215 11 119252289 to 119252319 30 - TSS region transcription start site region 112215
Tssr112216 11 119252488 to 119252508 20 - TSS region transcription start site region 112216
Cpgi4263 11 119253267 to 119253613 346 CpG island CpG island 4263
Gm46303 11 119256916 to 119259163 2247 - lncRNA gene predicted gene, 46303
Tssr106169 11 119258947 to 119258960 13 + TSS region transcription start site region 106169
Cpgi4264 11 119259080 to 119259238 158 CpG island CpG island 4264
Cpgi4265 11 119267654 to 119268648 994 CpG island CpG island 4265
Tssr106170 11 119267957 to 119267968 11 + TSS region transcription start site region 106170
Gaa 11 119267963 to 119285458 17495 + protein coding gene glucosidase, alpha, acid
Tssr106171 11 119268004 to 119268099 95 + TSS region transcription start site region 106171
Tssr106172 11 119270165 to 119270182 17 + TSS region transcription start site region 106172
Tssr106173 11 119270227 to 119270242 15 + TSS region transcription start site region 106173
Tssr106174 11 119274880 to 119274911 31 + TSS region transcription start site region 106174