Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:118393521-118933522

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108 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Lgals3bp 11 118392752 to 118401931 9179 - protein coding gene lectin, galactoside-binding, soluble, 3 binding protein
Tssr106135 11 118393519 to 118393543 24 + TSS region transcription start site region 106135
Tssr112144 11 118393520 to 118393537 17 - TSS region transcription start site region 112144
Tssr112145 11 118393541 to 118393556 15 - TSS region transcription start site region 112145
Tssr112146 11 118393557 to 118393575 18 - TSS region transcription start site region 112146
Tssr112147 11 118393579 to 118393592 13 - TSS region transcription start site region 112147
Tssr112148 11 118393602 to 118393618 16 - TSS region transcription start site region 112148
Tssr112149 11 118393621 to 118393633 12 - TSS region transcription start site region 112149
Tssr112150 11 118393635 to 118393642 7 - TSS region transcription start site region 112150
Tssr112151 11 118393667 to 118393696 29 - TSS region transcription start site region 112151
Tssr112152 11 118393705 to 118393744 39 - TSS region transcription start site region 112152
Tssr112153 11 118393828 to 118393837 9 - TSS region transcription start site region 112153
Tssr112154 11 118393855 to 118393866 11 - TSS region transcription start site region 112154
Tssr112155 11 118393933 to 118393940 7 - TSS region transcription start site region 112155
Tssr106136 11 118393936 to 118393962 26 + TSS region transcription start site region 106136
Tssr112156 11 118393941 to 118393950 9 - TSS region transcription start site region 112156
Tssr112157 11 118393956 to 118393970 14 - TSS region transcription start site region 112157
Tssr112158 11 118393978 to 118393981 3 - TSS region transcription start site region 112158
Tssr112159 11 118393983 to 118394021 38 - TSS region transcription start site region 112159
Tssr106137 11 118394003 to 118394017 14 + TSS region transcription start site region 106137
Tssr112160 11 118396692 to 118396741 49 - TSS region transcription start site region 112160
Tssr112161 11 118396758 to 118396769 11 - TSS region transcription start site region 112161
Tssr112162 11 118396823 to 118396838 15 - TSS region transcription start site region 112162
Tssr112163 11 118398411 to 118398460 49 - TSS region transcription start site region 112163
Tssr112164 11 118398529 to 118398540 11 - TSS region transcription start site region 112164
Tssr112165 11 118399853 to 118399856 3 - TSS region transcription start site region 112165
Tssr112166 11 118401826 to 118401964 138 - TSS region transcription start site region 112166
Tssr106138 11 118402047 to 118402063 16 + TSS region transcription start site region 106138
Cant1 11 118406289 to 118419086 12797 - protein coding gene calcium activated nucleotidase 1
Tssr112167 11 118415800 to 118415824 24 - TSS region transcription start site region 112167
Tssr112168 11 118415834 to 118415841 7 - TSS region transcription start site region 112168
Cpgi4233 11 118418561 to 118419475 914 CpG island CpG island 4233
Tssr112169 11 118418956 to 118419015 59 - TSS region transcription start site region 112169
Tssr112170 11 118419018 to 118419046 28 - TSS region transcription start site region 112170
Tssr112171 11 118419116 to 118419131 15 - TSS region transcription start site region 112171
Tssr106139 11 118419223 to 118419251 28 + TSS region transcription start site region 106139
Gm35598 11 118422161 to 118428213 6052 - lncRNA gene predicted gene, 35598
Cpgi4234 11 118423609 to 118423820 211 CpG island CpG island 4234
Tssr112172 11 118426513 to 118426519 6 - TSS region transcription start site region 112172
Tssr106140 11 118428115 to 118428141 26 + TSS region transcription start site region 106140
Tssr106141 11 118428150 to 118428191 41 + TSS region transcription start site region 106141
C1qtnf1 11 118428203 to 118449963 21760 + protein coding gene C1q and tumor necrosis factor related protein 1
Tssr106142 11 118428208 to 118428231 23 + TSS region transcription start site region 106142
Tssr106143 11 118428245 to 118428256 11 + TSS region transcription start site region 106143
Tssr106144 11 118428273 to 118428284 11 + TSS region transcription start site region 106144
Tssr106145 11 118428401 to 118428451 50 + TSS region transcription start site region 106145
Tssr106146 11 118428458 to 118428468 10 + TSS region transcription start site region 106146
Tssr106147 11 118428493 to 118428509 16 + TSS region transcription start site region 106147
Tssr106148 11 118428517 to 118428548 31 + TSS region transcription start site region 106148
Tssr106149 11 118433826 to 118433863 37 + TSS region transcription start site region 106149
Tssr106150 11 118443515 to 118443537 22 + TSS region transcription start site region 106150
Gm11747 11 118444200 to 118454995 10795 - antisense lncRNA gene predicted gene 11747
Tssr106151 11 118449838 to 118449847 9 + TSS region transcription start site region 106151
Tssr106152 11 118449873 to 118449886 13 + TSS region transcription start site region 106152
Gm18156 11 118471606 to 118472115 509 - pseudogene predicted gene, 18156
Tssr106153 11 118475826 to 118475836 10 + TSS region transcription start site region 106153
Gm11748 11 118476470 to 118479458 2988 - unclassified non-coding RNA gene predicted gene 11748
Cpgi4235 11 118476670 to 118477509 839 CpG island CpG island 4235
Tssr106154 11 118476824 to 118476830 6 + TSS region transcription start site region 106154
Engase 11 118476829 to 118489209 12380 + protein coding gene endo-beta-N-acetylglucosaminidase
Tssr106155 11 118476934 to 118476994 60 + TSS region transcription start site region 106155
Rbfox3 11 118489762 to 118911597 421835 - protein coding gene RNA binding protein, fox-1 homolog (C. elegans) 3
Tssr106156 11 118490118 to 118490120 2 + TSS region transcription start site region 106156
Tssr112173 11 118491233 to 118491246 13 - TSS region transcription start site region 112173
Tssr112174 11 118494172 to 118494183 11 - TSS region transcription start site region 112174
Tssr112175 11 118494209 to 118494235 26 - TSS region transcription start site region 112175
Tssr112176 11 118495276 to 118495280 4 - TSS region transcription start site region 112176
Tssr112177 11 118495496 to 118495512 16 - TSS region transcription start site region 112177
Cpgi4236 11 118503470 to 118503731 261 CpG island CpG island 4236
Tssr112178 11 118510665 to 118510666 1 - TSS region transcription start site region 112178
Tssr112179 11 118513250 to 118513269 19 - TSS region transcription start site region 112179
Tssr112180 11 118513341 to 118513350 9 - TSS region transcription start site region 112180
Tssr112181 11 118513354 to 118513375 21 - TSS region transcription start site region 112181
Tssr106157 11 118515784 to 118515787 3 + TSS region transcription start site region 106157
Cpgi4237 11 118568658 to 118570906 2248 CpG island CpG island 4237
Tssr112182 11 118569687 to 118569732 45 - TSS region transcription start site region 112182
Tssr112183 11 118569962 to 118570000 38 - TSS region transcription start site region 112183
Tssr112184 11 118570312 to 118570323 11 - TSS region transcription start site region 112184
D11Mit362.1 11 118580857 to 118580966 109 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 362.1
D11Mit362 11 118580971 to 118581076 105 DNA segment DNA Segment, Chr 11 Massachusetts Institute of Technology 362
9530053I22Rik 11 118591561 to 118592514 953 unclassified gene RIKEN cDNA 9530053I22 gene
Cpgi4238 11 118603227 to 118603589 362 CpG island CpG island 4238
Tssr112185 11 118650994 to 118650997 3 - TSS region transcription start site region 112185
Tssr112186 11 118663521 to 118663522 1 - TSS region transcription start site region 112186
Cpgi4239 11 118693028 to 118693341 313 CpG island CpG island 4239
Cpgi4240 11 118744771 to 118745009 238 CpG island CpG island 4240
C230069I12Rik 11 118760933 to 118764489 3556 unclassified gene RIKEN cDNA C230069I12 gene
Gm11750 11 118791372 to 118793828 2456 + lincRNA gene predicted gene 11750
Tssr112187 11 118796739 to 118796753 14 - TSS region transcription start site region 112187
Tssr112188 11 118797713 to 118797724 11 - TSS region transcription start site region 112188
Tssr112189 11 118797730 to 118797746 16 - TSS region transcription start site region 112189
Tssr112190 11 118797764 to 118797774 10 - TSS region transcription start site region 112190
Tssr112191 11 118797979 to 118797989 10 - TSS region transcription start site region 112191
Gm25040 11 118852723 to 118852788 65 - miRNA gene predicted gene, 25040
Gm11749 11 118866257 to 118867220 963 - sense intronic lncRNA gene predicted gene 11749
Tssr112192 11 118868537 to 118868555 18 - TSS region transcription start site region 112192
Tssr112193 11 118868922 to 118868937 15 - TSS region transcription start site region 112193
Tssr112194 11 118869119 to 118869158 39 - TSS region transcription start site region 112194
Tssr3751 11 118869443 to 118869458 15 - TSS region transcription start site region 3751
Cpgi4241 11 118891113 to 118891706 593 CpG island CpG island 4241
Cpgi4242 11 118907199 to 118910267 3068 CpG island CpG island 4242
Tssr112195 11 118909468 to 118909479 11 - TSS region transcription start site region 112195
Tssr112196 11 118909487 to 118909575 88 - TSS region transcription start site region 112196
Tssr112197 11 118909639 to 118909739 100 - TSS region transcription start site region 112197
Tssr112198 11 118909795 to 118909806 11 - TSS region transcription start site region 112198
Tssr112199 11 118909848 to 118909863 15 - TSS region transcription start site region 112199
Tssr112200 11 118910036 to 118910058 22 - TSS region transcription start site region 112200
Tssr112201 11 118910090 to 118910102 12 - TSS region transcription start site region 112201