Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:117508853-118189596

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167 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr106062 11 117523526 to 117523544 18 + TSS region transcription start site region 106062
Gm11734 11 117523603 to 117532205 8602 + lincRNA gene predicted gene 11734
D11Dcr40 11 117573445 to 117573540 95 DNA segment DNA Segment, Chr 11, Derry C. Roopenian 40
Gm35170 11 117594911 to 117639763 44852 - lncRNA gene predicted gene, 35170
2900041M22Rik 11 117611247 to 117613417 2170 + lncRNA gene RIKEN cDNA 2900041M22 gene
Tssr112028 11 117639738 to 117639784 46 - TSS region transcription start site region 112028
Cpgi4212 11 117653682 to 117656313 2631 CpG island CpG island 4212
Tssr106063 11 117654211 to 117654258 47 + TSS region transcription start site region 106063
Tnrc6c 11 117654289 to 117763439 109150 + protein coding gene trinucleotide repeat containing 6C
Tssr112029 11 117654549 to 117654552 3 - TSS region transcription start site region 112029
Tssr3743 11 117654721 to 117654741 20 + TSS region transcription start site region 3743
Tssr106064 11 117654798 to 117654824 26 + TSS region transcription start site region 106064
Tssr106065 11 117665503 to 117665514 11 + TSS region transcription start site region 106065
2610524J22Rik 11 117727740 to 117728128 388 unclassified gene RIKEN cDNA 2610524J22 gene
Tssr106066 11 117762215 to 117762220 5 + TSS region transcription start site region 106066
Tssr106067 11 117762439 to 117762458 19 + TSS region transcription start site region 106067
Tssr106068 11 117762498 to 117762513 15 + TSS region transcription start site region 106068
Tmc6 11 117765985 to 117782193 16208 - protein coding gene transmembrane channel-like gene family 6
Tssr112030 11 117774754 to 117774765 11 - TSS region transcription start site region 112030
Tssr112031 11 117775038 to 117775049 11 - TSS region transcription start site region 112031
Tssr112032 11 117778988 to 117779029 41 - TSS region transcription start site region 112032
Cpgi4213 11 117779564 to 117780908 1344 CpG island CpG island 4213
Tssr112033 11 117779605 to 117779631 26 - TSS region transcription start site region 112033
Tssr112034 11 117780588 to 117780606 18 - TSS region transcription start site region 112034
Tssr112035 11 117780613 to 117780629 16 - TSS region transcription start site region 112035
Tssr112036 11 117780630 to 117780688 58 - TSS region transcription start site region 112036
Tmc8 11 117782076 to 117793110 11034 + protein coding gene transmembrane channel-like gene family 8
Tssr106069 11 117782112 to 117782130 18 + TSS region transcription start site region 106069
Tssr112037 11 117782155 to 117782167 12 - TSS region transcription start site region 112037
Tssr112038 11 117782182 to 117782203 21 - TSS region transcription start site region 112038
Tssr112039 11 117782206 to 117782221 15 - TSS region transcription start site region 112039
Tssr106070 11 117782281 to 117782337 56 + TSS region transcription start site region 106070
Tssr106071 11 117782358 to 117782381 23 + TSS region transcription start site region 106071
Cpgi4214 11 117782969 to 117783652 683 CpG island CpG island 4214
Gm11723 11 117783326 to 117785055 1729 - antisense lncRNA gene predicted gene 11723
Gm11724 11 117789897 to 117791313 1416 - antisense lncRNA gene predicted gene 11724
Cpgi4215 11 117789950 to 117790480 530 CpG island CpG island 4215
Tssr106072 11 117790702 to 117790703 1 + TSS region transcription start site region 106072
Tssr106073 11 117790889 to 117790927 38 + TSS region transcription start site region 106073
Tssr106074 11 117792455 to 117792466 11 + TSS region transcription start site region 106074
Cpgi4216 11 117792479 to 117792828 349 CpG island CpG island 4216
6030468B19Rik 11 117797660 to 117807301 9641 + protein coding gene RIKEN cDNA 6030468B19 gene
Tssr106075 11 117797707 to 117797723 16 + TSS region transcription start site region 106075
Tssr106076 11 117797726 to 117797748 22 + TSS region transcription start site region 106076
Tssr106077 11 117798392 to 117798422 30 + TSS region transcription start site region 106077
Cpgi4217 11 117809328 to 117810835 1507 CpG island CpG island 4217
Tssr106078 11 117809653 to 117809685 32 + TSS region transcription start site region 106078
Gm20708 11 117809668 to 117839904 30236 + protein coding gene predicted gene 20708
Syngr2 11 117809668 to 117814283 4615 + protein coding gene synaptogyrin 2
Tssr106079 11 117809687 to 117809703 16 + TSS region transcription start site region 106079
Tssr106080 11 117813292 to 117813303 11 + TSS region transcription start site region 106080
Tssr112040 11 117813377 to 117813437 60 - TSS region transcription start site region 112040
Tssr106081 11 117813413 to 117813421 8 + TSS region transcription start site region 106081
Tssr112041 11 117813442 to 117813466 24 - TSS region transcription start site region 112041
Tssr106082 11 117813447 to 117813464 17 + TSS region transcription start site region 106082
Tssr112042 11 117813481 to 117813495 14 - TSS region transcription start site region 112042
Tssr106083 11 117813658 to 117813679 21 + TSS region transcription start site region 106083
Tssr106084 11 117813701 to 117813736 35 + TSS region transcription start site region 106084
Tssr112043 11 117813723 to 117813770 47 - TSS region transcription start site region 112043
Tssr106085 11 117813755 to 117813766 11 + TSS region transcription start site region 106085
Tssr106086 11 117813815 to 117813835 20 + TSS region transcription start site region 106086
Tk1 11 117815526 to 117826092 10566 - protein coding gene thymidine kinase 1
Tssr112044 11 117819103 to 117819143 40 - TSS region transcription start site region 112044
Cpgi4218 11 117825695 to 117826089 394 CpG island CpG island 4218
Tssr112045 11 117825767 to 117825776 9 - TSS region transcription start site region 112045
Tssr112046 11 117825784 to 117825872 88 - TSS region transcription start site region 112046
Tssr106087 11 117825885 to 117825926 41 + TSS region transcription start site region 106087
Afmid 11 117825924 to 117839908 13984 + protein coding gene arylformamidase
Tssr106088 11 117825933 to 117825969 36 + TSS region transcription start site region 106088
Tssr112047 11 117827397 to 117827406 9 - TSS region transcription start site region 112047
Tssr112048 11 117828271 to 117828289 18 - TSS region transcription start site region 112048
Tssr106089 11 117829370 to 117829382 12 + TSS region transcription start site region 106089
Tssr106090 11 117829490 to 117829510 20 + TSS region transcription start site region 106090
Tssr106091 11 117830648 to 117830662 14 + TSS region transcription start site region 106091
Tssr106092 11 117832239 to 117832267 28 + TSS region transcription start site region 106092
Tssr106093 11 117832286 to 117832299 13 + TSS region transcription start site region 106093
Cpgi4219 11 117832619 to 117832792 173 CpG island CpG island 4219
Cpgi4220 11 117848853 to 117849596 743 CpG island CpG island 4220
Tssr112049 11 117849078 to 117849131 53 - TSS region transcription start site region 112049
Tssr106094 11 117849223 to 117849234 11 + TSS region transcription start site region 106094
Birc5 11 117849251 to 117855743 6492 + protein coding gene baculoviral IAP repeat-containing 5
Tssr106095 11 117849273 to 117849282 9 + TSS region transcription start site region 106095
Tssr106096 11 117849286 to 117849340 54 + TSS region transcription start site region 106096
Cpgi4221 11 117860538 to 117861049 511 CpG island CpG island 4221
Tmem235 11 117860752 to 117865543 4791 + protein coding gene transmembrane protein 235
Cpgi4222 11 117864066 to 117864255 189 CpG island CpG island 4222
Tha1 11 117867952 to 117873481 5529 - protein coding gene threonine aldolase 1
Gm11725 11 117871250 to 117887416 16166 + antisense lncRNA gene predicted gene 11725
Tssr112050 11 117871881 to 117871893 12 - TSS region transcription start site region 112050
Cpgi4223 11 117872844 to 117873576 732 CpG island CpG island 4223
Tssr112051 11 117873433 to 117873460 27 - TSS region transcription start site region 112051
Tssr112052 11 117873464 to 117873481 17 - TSS region transcription start site region 112052
Tssr112053 11 117875763 to 117875782 19 - TSS region transcription start site region 112053
Tssr106097 11 117878556 to 117878563 7 + TSS region transcription start site region 106097
Gm11726 11 117921905 to 117922328 423 + pseudogene predicted gene 11726
D11Dcr41 11 117926556 to 117926651 95 DNA segment DNA Segment, Chr 11, Derry C. Roopenian 41
Cpgi4224 11 117930611 to 117931396 785 CpG island CpG island 4224
Cpgi4225 11 117949303 to 117950160 857 CpG island CpG island 4225
Tssr106098 11 117952461 to 117952480 19 + TSS region transcription start site region 106098
Cpgi4226 11 117963233 to 117963934 701 CpG island CpG island 4226
Tssr106099 11 117963652 to 117963686 34 + TSS region transcription start site region 106099
Socs3 11 117966079 to 117970047 3968 - protein coding gene suppressor of cytokine signaling 3
Tssr112054 11 117967277 to 117967290 13 - TSS region transcription start site region 112054
Cpgi4227 11 117967411 to 117970132 2721 CpG island CpG island 4227
Tssr112055 11 117967959 to 117967967 8 - TSS region transcription start site region 112055
Tssr112056 11 117968057 to 117968072 15 - TSS region transcription start site region 112056
Tssr112057 11 117968183 to 117968224 41 - TSS region transcription start site region 112057
Tssr112058 11 117968621 to 117968645 24 - TSS region transcription start site region 112058
Tssr112059 11 117968711 to 117968745 34 - TSS region transcription start site region 112059
Tssr112060 11 117969176 to 117969192 16 - TSS region transcription start site region 112060
Tssr112061 11 117969284 to 117969297 13 - TSS region transcription start site region 112061
Tssr112062 11 117969384 to 117969416 32 - TSS region transcription start site region 112062
Tssr112063 11 117969905 to 117969938 33 - TSS region transcription start site region 112063
Tssr112064 11 117970343 to 117970354 11 - TSS region transcription start site region 112064
Tssr106100 11 117976217 to 117976228 11 + TSS region transcription start site region 106100
Tssr106101 11 117976287 to 117976301 14 + TSS region transcription start site region 106101
Tssr106102 11 117976303 to 117976318 15 + TSS region transcription start site region 106102
Tssr106103 11 117976320 to 117976360 40 + TSS region transcription start site region 106103
Tssr106104 11 117977997 to 117978010 13 + TSS region transcription start site region 106104
Tssr106105 11 117978092 to 117978101 9 + TSS region transcription start site region 106105
Tssr106106 11 117978102 to 117978176 74 + TSS region transcription start site region 106106
Cpgi4228 11 117986178 to 117987515 1337 CpG island CpG island 4228
Pgs1 11 117986297 to 118024011 37714 + protein coding gene phosphatidylglycerophosphate synthase 1
Tssr106107 11 117986838 to 117986899 61 + TSS region transcription start site region 106107
Tssr106108 11 117986900 to 117986916 16 + TSS region transcription start site region 106108
Tssr112065 11 117987185 to 117987196 11 - TSS region transcription start site region 112065
Tssr112066 11 117987213 to 117987232 19 - TSS region transcription start site region 112066
Tssr106109 11 117987289 to 117987311 22 + TSS region transcription start site region 106109
Tssr106110 11 117987416 to 117987429 13 + TSS region transcription start site region 106110
Tssr106111 11 117987433 to 117987459 26 + TSS region transcription start site region 106111
Tssr106112 11 117987468 to 117987479 11 + TSS region transcription start site region 106112
Tssr112067 11 117988099 to 117988131 32 - TSS region transcription start site region 112067
Tssr112068 11 117989859 to 117989868 9 - TSS region transcription start site region 112068
Tssr112069 11 117991825 to 117991837 12 - TSS region transcription start site region 112069
Tssr3744 11 117991850 to 117991859 9 - TSS region transcription start site region 3744
Tssr112070 11 117991865 to 117991876 11 - TSS region transcription start site region 112070
Mir6933 11 118002270 to 118002350 80 + miRNA gene microRNA 6933
Tssr106113 11 118003518 to 118003522 4 + TSS region transcription start site region 106113
Tssr106114 11 118004643 to 118004648 5 + TSS region transcription start site region 106114
Tssr106115 11 118014544 to 118014577 33 + TSS region transcription start site region 106115
Tssr106116 11 118014591 to 118014594 3 + TSS region transcription start site region 106116
Dnah17 11 118021723 to 118130634 108911 - protein coding gene dynein, axonemal, heavy chain 17
Tssr3745 11 118100372 to 118100373 1 - TSS region transcription start site region 3745
Gm11738 11 118114855 to 118118279 3424 + antisense lncRNA gene predicted gene 11738
Tssr112071 11 118130645 to 118130678 33 - TSS region transcription start site region 112071
Tssr112072 11 118130688 to 118130704 16 - TSS region transcription start site region 112072
D11Mit48.1 11 118131665 to 118131789 124 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 48.1
D11Mit48 11 118131764 to 118131898 134 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 48
Vispl 11 118131764 to 118131898 134 QTL visual placing
Pregq2 11 118131898 to 94172953 -23958945 QTL pregnancy QTL 2
Lvrq7 11 118131898 to 12318637 -105813261 QTL liver weight QTL 7
Dbm2 11 118131898 to 94546357 -23585541 QTL diabetes modifier 2
Gm38514 11 118132022 to 118137775 5753 - lncRNA gene predicted gene, 38514
D11Mit49 11 118142292 to 118142447 155 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 49
D11Mit49.1 11 118142386 to 118142504 118 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 49.1
Tssr112073 11 118143877 to 118143880 3 - TSS region transcription start site region 112073
Tssr112074 11 118145778 to 118145803 25 - TSS region transcription start site region 112074
Tssr112075 11 118145811 to 118145828 17 - TSS region transcription start site region 112075
Tssr3746 11 118145987 to 118146009 22 + TSS region transcription start site region 3746
Tssr106117 11 118146026 to 118146037 11 + TSS region transcription start site region 106117
Tssr106118 11 118146048 to 118146063 15 + TSS region transcription start site region 106118
Tssr106119 11 118146073 to 118146091 18 + TSS region transcription start site region 106119
Tssr3747 11 118146693 to 118146737 44 + TSS region transcription start site region 3747
Tssr112076 11 118148011 to 118148026 15 - TSS region transcription start site region 112076
Tssr106120 11 118153209 to 118153239 30 + TSS region transcription start site region 106120
Cyth1 11 118164166 to 118248592 84426 - protein coding gene cytohesin 1
Gm24060 11 118180941 to 118181035 94 - snRNA gene predicted gene, 24060