Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:117508682-117801313

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45 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr106062 11 117523526 to 117523544 18 + TSS region transcription start site region 106062
Gm11734 11 117523603 to 117532205 8602 + lincRNA gene predicted gene 11734
D11Dcr40 11 117573445 to 117573540 95 DNA segment DNA Segment, Chr 11, Derry C. Roopenian 40
Gm35170 11 117594911 to 117639763 44852 - lncRNA gene predicted gene, 35170
2900041M22Rik 11 117611247 to 117613417 2170 + lncRNA gene RIKEN cDNA 2900041M22 gene
Tssr112028 11 117639738 to 117639784 46 - TSS region transcription start site region 112028
Cpgi4212 11 117653682 to 117656313 2631 CpG island CpG island 4212
Tssr106063 11 117654211 to 117654258 47 + TSS region transcription start site region 106063
Tnrc6c 11 117654289 to 117763439 109150 + protein coding gene trinucleotide repeat containing 6C
Tssr112029 11 117654549 to 117654552 3 - TSS region transcription start site region 112029
Tssr3743 11 117654721 to 117654741 20 + TSS region transcription start site region 3743
Tssr106064 11 117654798 to 117654824 26 + TSS region transcription start site region 106064
Tssr106065 11 117665503 to 117665514 11 + TSS region transcription start site region 106065
2610524J22Rik 11 117727740 to 117728128 388 unclassified gene RIKEN cDNA 2610524J22 gene
Tssr106066 11 117762215 to 117762220 5 + TSS region transcription start site region 106066
Tssr106067 11 117762439 to 117762458 19 + TSS region transcription start site region 106067
Tssr106068 11 117762498 to 117762513 15 + TSS region transcription start site region 106068
Tmc6 11 117765985 to 117782193 16208 - protein coding gene transmembrane channel-like gene family 6
Tssr112030 11 117774754 to 117774765 11 - TSS region transcription start site region 112030
Tssr112031 11 117775038 to 117775049 11 - TSS region transcription start site region 112031
Tssr112032 11 117778988 to 117779029 41 - TSS region transcription start site region 112032
Cpgi4213 11 117779564 to 117780908 1344 CpG island CpG island 4213
Tssr112033 11 117779605 to 117779631 26 - TSS region transcription start site region 112033
Tssr112034 11 117780588 to 117780606 18 - TSS region transcription start site region 112034
Tssr112035 11 117780613 to 117780629 16 - TSS region transcription start site region 112035
Tssr112036 11 117780630 to 117780688 58 - TSS region transcription start site region 112036
Tmc8 11 117782076 to 117793110 11034 + protein coding gene transmembrane channel-like gene family 8
Tssr106069 11 117782112 to 117782130 18 + TSS region transcription start site region 106069
Tssr112037 11 117782155 to 117782167 12 - TSS region transcription start site region 112037
Tssr112038 11 117782182 to 117782203 21 - TSS region transcription start site region 112038
Tssr112039 11 117782206 to 117782221 15 - TSS region transcription start site region 112039
Tssr106070 11 117782281 to 117782337 56 + TSS region transcription start site region 106070
Tssr106071 11 117782358 to 117782381 23 + TSS region transcription start site region 106071
Cpgi4214 11 117782969 to 117783652 683 CpG island CpG island 4214
Gm11723 11 117783326 to 117785055 1729 - antisense lncRNA gene predicted gene 11723
Gm11724 11 117789897 to 117791313 1416 - antisense lncRNA gene predicted gene 11724
Cpgi4215 11 117789950 to 117790480 530 CpG island CpG island 4215
Tssr106072 11 117790702 to 117790703 1 + TSS region transcription start site region 106072
Tssr106073 11 117790889 to 117790927 38 + TSS region transcription start site region 106073
Tssr106074 11 117792455 to 117792466 11 + TSS region transcription start site region 106074
Cpgi4216 11 117792479 to 117792828 349 CpG island CpG island 4216
6030468B19Rik 11 117797660 to 117807301 9641 + protein coding gene RIKEN cDNA 6030468B19 gene
Tssr106075 11 117797707 to 117797723 16 + TSS region transcription start site region 106075
Tssr106076 11 117797726 to 117797748 22 + TSS region transcription start site region 106076
Tssr106077 11 117798392 to 117798422 30 + TSS region transcription start site region 106077