Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:117424738-117854784

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90 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm11732 11 117426178 to 117438866 12688 + lncRNA gene predicted gene 11732
Tssr106061 11 117426202 to 117426212 10 + TSS region transcription start site region 106061
Gm46264 11 117461620 to 117463706 2086 - lncRNA gene predicted gene, 46264
Gm34418 11 117479875 to 117482597 2722 - lincRNA gene predicted gene, 34418
Cpgi4211 11 117482554 to 117482855 301 CpG island CpG island 4211
Gm11733 11 117484368 to 117489014 4646 + protein coding gene predicted gene 11733
Gm34502 11 117490661 to 117498295 7634 - lncRNA gene predicted gene, 34502
Tssr106062 11 117523526 to 117523544 18 + TSS region transcription start site region 106062
Gm11734 11 117523603 to 117532205 8602 + lincRNA gene predicted gene 11734
D11Dcr40 11 117573445 to 117573540 95 DNA segment DNA Segment, Chr 11, Derry C. Roopenian 40
Gm35170 11 117594911 to 117639763 44852 - lncRNA gene predicted gene, 35170
2900041M22Rik 11 117611247 to 117613417 2170 + lncRNA gene RIKEN cDNA 2900041M22 gene
Tssr112028 11 117639738 to 117639784 46 - TSS region transcription start site region 112028
Cpgi4212 11 117653682 to 117656313 2631 CpG island CpG island 4212
Tssr106063 11 117654211 to 117654258 47 + TSS region transcription start site region 106063
Tnrc6c 11 117654289 to 117763439 109150 + protein coding gene trinucleotide repeat containing 6C
Tssr112029 11 117654549 to 117654552 3 - TSS region transcription start site region 112029
Tssr3743 11 117654721 to 117654741 20 + TSS region transcription start site region 3743
Tssr106064 11 117654798 to 117654824 26 + TSS region transcription start site region 106064
Tssr106065 11 117665503 to 117665514 11 + TSS region transcription start site region 106065
2610524J22Rik 11 117727740 to 117728128 388 unclassified gene RIKEN cDNA 2610524J22 gene
Tssr106066 11 117762215 to 117762220 5 + TSS region transcription start site region 106066
Tssr106067 11 117762439 to 117762458 19 + TSS region transcription start site region 106067
Tssr106068 11 117762498 to 117762513 15 + TSS region transcription start site region 106068
Tmc6 11 117765985 to 117782193 16208 - protein coding gene transmembrane channel-like gene family 6
Tssr112030 11 117774754 to 117774765 11 - TSS region transcription start site region 112030
Tssr112031 11 117775038 to 117775049 11 - TSS region transcription start site region 112031
Tssr112032 11 117778988 to 117779029 41 - TSS region transcription start site region 112032
Cpgi4213 11 117779564 to 117780908 1344 CpG island CpG island 4213
Tssr112033 11 117779605 to 117779631 26 - TSS region transcription start site region 112033
Tssr112034 11 117780588 to 117780606 18 - TSS region transcription start site region 112034
Tssr112035 11 117780613 to 117780629 16 - TSS region transcription start site region 112035
Tssr112036 11 117780630 to 117780688 58 - TSS region transcription start site region 112036
Tmc8 11 117782076 to 117793110 11034 + protein coding gene transmembrane channel-like gene family 8
Tssr106069 11 117782112 to 117782130 18 + TSS region transcription start site region 106069
Tssr112037 11 117782155 to 117782167 12 - TSS region transcription start site region 112037
Tssr112038 11 117782182 to 117782203 21 - TSS region transcription start site region 112038
Tssr112039 11 117782206 to 117782221 15 - TSS region transcription start site region 112039
Tssr106070 11 117782281 to 117782337 56 + TSS region transcription start site region 106070
Tssr106071 11 117782358 to 117782381 23 + TSS region transcription start site region 106071
Cpgi4214 11 117782969 to 117783652 683 CpG island CpG island 4214
Gm11723 11 117783326 to 117785055 1729 - antisense lncRNA gene predicted gene 11723
Gm11724 11 117789897 to 117791313 1416 - antisense lncRNA gene predicted gene 11724
Cpgi4215 11 117789950 to 117790480 530 CpG island CpG island 4215
Tssr106072 11 117790702 to 117790703 1 + TSS region transcription start site region 106072
Tssr106073 11 117790889 to 117790927 38 + TSS region transcription start site region 106073
Tssr106074 11 117792455 to 117792466 11 + TSS region transcription start site region 106074
Cpgi4216 11 117792479 to 117792828 349 CpG island CpG island 4216
6030468B19Rik 11 117797660 to 117807301 9641 + protein coding gene RIKEN cDNA 6030468B19 gene
Tssr106075 11 117797707 to 117797723 16 + TSS region transcription start site region 106075
Tssr106076 11 117797726 to 117797748 22 + TSS region transcription start site region 106076
Tssr106077 11 117798392 to 117798422 30 + TSS region transcription start site region 106077
Cpgi4217 11 117809328 to 117810835 1507 CpG island CpG island 4217
Tssr106078 11 117809653 to 117809685 32 + TSS region transcription start site region 106078
Gm20708 11 117809668 to 117839904 30236 + protein coding gene predicted gene 20708
Syngr2 11 117809668 to 117814283 4615 + protein coding gene synaptogyrin 2
Tssr106079 11 117809687 to 117809703 16 + TSS region transcription start site region 106079
Tssr106080 11 117813292 to 117813303 11 + TSS region transcription start site region 106080
Tssr112040 11 117813377 to 117813437 60 - TSS region transcription start site region 112040
Tssr106081 11 117813413 to 117813421 8 + TSS region transcription start site region 106081
Tssr112041 11 117813442 to 117813466 24 - TSS region transcription start site region 112041
Tssr106082 11 117813447 to 117813464 17 + TSS region transcription start site region 106082
Tssr112042 11 117813481 to 117813495 14 - TSS region transcription start site region 112042
Tssr106083 11 117813658 to 117813679 21 + TSS region transcription start site region 106083
Tssr106084 11 117813701 to 117813736 35 + TSS region transcription start site region 106084
Tssr112043 11 117813723 to 117813770 47 - TSS region transcription start site region 112043
Tssr106085 11 117813755 to 117813766 11 + TSS region transcription start site region 106085
Tssr106086 11 117813815 to 117813835 20 + TSS region transcription start site region 106086
Tk1 11 117815526 to 117826092 10566 - protein coding gene thymidine kinase 1
Tssr112044 11 117819103 to 117819143 40 - TSS region transcription start site region 112044
Cpgi4218 11 117825695 to 117826089 394 CpG island CpG island 4218
Tssr112045 11 117825767 to 117825776 9 - TSS region transcription start site region 112045
Tssr112046 11 117825784 to 117825872 88 - TSS region transcription start site region 112046
Tssr106087 11 117825885 to 117825926 41 + TSS region transcription start site region 106087
Afmid 11 117825924 to 117839908 13984 + protein coding gene arylformamidase
Tssr106088 11 117825933 to 117825969 36 + TSS region transcription start site region 106088
Tssr112047 11 117827397 to 117827406 9 - TSS region transcription start site region 112047
Tssr112048 11 117828271 to 117828289 18 - TSS region transcription start site region 112048
Tssr106089 11 117829370 to 117829382 12 + TSS region transcription start site region 106089
Tssr106090 11 117829490 to 117829510 20 + TSS region transcription start site region 106090
Tssr106091 11 117830648 to 117830662 14 + TSS region transcription start site region 106091
Tssr106092 11 117832239 to 117832267 28 + TSS region transcription start site region 106092
Tssr106093 11 117832286 to 117832299 13 + TSS region transcription start site region 106093
Cpgi4219 11 117832619 to 117832792 173 CpG island CpG island 4219
Cpgi4220 11 117848853 to 117849596 743 CpG island CpG island 4220
Tssr112049 11 117849078 to 117849131 53 - TSS region transcription start site region 112049
Tssr106094 11 117849223 to 117849234 11 + TSS region transcription start site region 106094
Birc5 11 117849251 to 117855743 6492 + protein coding gene baculoviral IAP repeat-containing 5
Tssr106095 11 117849273 to 117849282 9 + TSS region transcription start site region 106095
Tssr106096 11 117849286 to 117849340 54 + TSS region transcription start site region 106096