Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:117338526-117708544

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32 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sept9 11 117199661 to 117362325 162664 + protein coding gene septin 9
Tssr112025 11 117360476 to 117360492 16 - TSS region transcription start site region 112025
Tssr112026 11 117360553 to 117360566 13 - TSS region transcription start site region 112026
Tssr106059 11 117361261 to 117361277 16 + TSS region transcription start site region 106059
Tssr106060 11 117361305 to 117361329 24 + TSS region transcription start site region 106060
A930024O17Rik 11 117384572 to 117385378 806 unclassified gene RIKEN cDNA A930024O17 gene
Cpgi4209 11 117394367 to 117394936 569 CpG island CpG island 4209
Gm34128 11 117407838 to 117411284 3446 - lncRNA gene predicted gene, 34128
Cpgi4210 11 117407849 to 117408126 277 CpG island CpG island 4210
Gm11729 11 117414389 to 117415368 979 + lincRNA gene predicted gene 11729
Gm8624 11 117420640 to 117421717 1077 - pseudogene predicted gene 8624
Tssr112027 11 117421157 to 117421162 5 - TSS region transcription start site region 112027
Gm11732 11 117426178 to 117438866 12688 + lncRNA gene predicted gene 11732
Tssr106061 11 117426202 to 117426212 10 + TSS region transcription start site region 106061
Gm46264 11 117461620 to 117463706 2086 - lncRNA gene predicted gene, 46264
Gm34418 11 117479875 to 117482597 2722 - lincRNA gene predicted gene, 34418
Cpgi4211 11 117482554 to 117482855 301 CpG island CpG island 4211
Gm11733 11 117484368 to 117489014 4646 + protein coding gene predicted gene 11733
Gm34502 11 117490661 to 117498295 7634 - lncRNA gene predicted gene, 34502
Tssr106062 11 117523526 to 117523544 18 + TSS region transcription start site region 106062
Gm11734 11 117523603 to 117532205 8602 + lincRNA gene predicted gene 11734
D11Dcr40 11 117573445 to 117573540 95 DNA segment DNA Segment, Chr 11, Derry C. Roopenian 40
Gm35170 11 117594911 to 117639763 44852 - lncRNA gene predicted gene, 35170
2900041M22Rik 11 117611247 to 117613417 2170 + lncRNA gene RIKEN cDNA 2900041M22 gene
Tssr112028 11 117639738 to 117639784 46 - TSS region transcription start site region 112028
Cpgi4212 11 117653682 to 117656313 2631 CpG island CpG island 4212
Tssr106063 11 117654211 to 117654258 47 + TSS region transcription start site region 106063
Tnrc6c 11 117654289 to 117763439 109150 + protein coding gene trinucleotide repeat containing 6C
Tssr112029 11 117654549 to 117654552 3 - TSS region transcription start site region 112029
Tssr3743 11 117654721 to 117654741 20 + TSS region transcription start site region 3743
Tssr106064 11 117654798 to 117654824 26 + TSS region transcription start site region 106064
Tssr106065 11 117665503 to 117665514 11 + TSS region transcription start site region 106065