Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:117239368-117734014

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71 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sept9 11 117199661 to 117362325 162664 + protein coding gene septin 9
Tssr106033 11 117241659 to 117241694 35 + TSS region transcription start site region 106033
Tssr106034 11 117249095 to 117249099 4 + TSS region transcription start site region 106034
Gm39478 11 117256929 to 117266233 9304 - lncRNA gene predicted gene, 39478
Gm16045 11 117257649 to 117263437 5788 - antisense lncRNA gene predicted gene 16045
Cpgi4205 11 117265763 to 117266772 1009 CpG island CpG island 4205
Tssr112021 11 117265986 to 117266000 14 - TSS region transcription start site region 112021
Tssr112022 11 117266034 to 117266054 20 - TSS region transcription start site region 112022
Tssr106035 11 117266157 to 117266189 32 + TSS region transcription start site region 106035
Tssr106036 11 117266216 to 117266266 50 + TSS region transcription start site region 106036
Tssr106037 11 117266274 to 117266298 24 + TSS region transcription start site region 106037
Tssr106038 11 117266410 to 117266472 62 + TSS region transcription start site region 106038
Cpgi4206 11 117267148 to 117267544 396 CpG island CpG island 4206
Tssr112023 11 117267498 to 117267511 13 - TSS region transcription start site region 112023
Tssr106039 11 117277189 to 117277200 11 + TSS region transcription start site region 106039
Tssr106040 11 117277389 to 117277402 13 + TSS region transcription start site region 106040
Tssr106041 11 117308135 to 117308158 23 + TSS region transcription start site region 106041
Tssr106042 11 117308162 to 117308184 22 + TSS region transcription start site region 106042
Tssr106043 11 117308788 to 117308826 38 + TSS region transcription start site region 106043
Gm34065 11 117321925 to 117324935 3010 - lncRNA gene predicted gene, 34065
Tssr106044 11 117326386 to 117326398 12 + TSS region transcription start site region 106044
Tssr106045 11 117326405 to 117326477 72 + TSS region transcription start site region 106045
Tssr106046 11 117326486 to 117326517 31 + TSS region transcription start site region 106046
Tssr106047 11 117326639 to 117326661 22 + TSS region transcription start site region 106047
Cpgi4207 11 117327034 to 117327205 171 CpG island CpG island 4207
Tssr112024 11 117327053 to 117327062 9 - TSS region transcription start site region 112024
Tssr106048 11 117331532 to 117331564 32 + TSS region transcription start site region 106048
Tssr106049 11 117331696 to 117331712 16 + TSS region transcription start site region 106049
Tssr106050 11 117331719 to 117331739 20 + TSS region transcription start site region 106050
Cpgi4208 11 117332018 to 117332656 638 CpG island CpG island 4208
Tssr106051 11 117332194 to 117332210 16 + TSS region transcription start site region 106051
Tssr106052 11 117332277 to 117332284 7 + TSS region transcription start site region 106052
Tssr106053 11 117332303 to 117332328 25 + TSS region transcription start site region 106053
Tssr106054 11 117332335 to 117332348 13 + TSS region transcription start site region 106054
Tssr106055 11 117332379 to 117332388 9 + TSS region transcription start site region 106055
Tssr106056 11 117332398 to 117332401 3 + TSS region transcription start site region 106056
Tssr106057 11 117332410 to 117332454 44 + TSS region transcription start site region 106057
Tssr106058 11 117333478 to 117333488 10 + TSS region transcription start site region 106058
Tssr3742 11 117334163 to 117334185 22 - TSS region transcription start site region 3742
Tssr112025 11 117360476 to 117360492 16 - TSS region transcription start site region 112025
Tssr112026 11 117360553 to 117360566 13 - TSS region transcription start site region 112026
Tssr106059 11 117361261 to 117361277 16 + TSS region transcription start site region 106059
Tssr106060 11 117361305 to 117361329 24 + TSS region transcription start site region 106060
A930024O17Rik 11 117384572 to 117385378 806 unclassified gene RIKEN cDNA A930024O17 gene
Cpgi4209 11 117394367 to 117394936 569 CpG island CpG island 4209
Gm34128 11 117407838 to 117411284 3446 - lncRNA gene predicted gene, 34128
Cpgi4210 11 117407849 to 117408126 277 CpG island CpG island 4210
Gm11729 11 117414389 to 117415368 979 + lincRNA gene predicted gene 11729
Gm8624 11 117420640 to 117421717 1077 - pseudogene predicted gene 8624
Tssr112027 11 117421157 to 117421162 5 - TSS region transcription start site region 112027
Gm11732 11 117426178 to 117438866 12688 + lncRNA gene predicted gene 11732
Tssr106061 11 117426202 to 117426212 10 + TSS region transcription start site region 106061
Gm46264 11 117461620 to 117463706 2086 - lncRNA gene predicted gene, 46264
Gm34418 11 117479875 to 117482597 2722 - lincRNA gene predicted gene, 34418
Cpgi4211 11 117482554 to 117482855 301 CpG island CpG island 4211
Gm11733 11 117484368 to 117489014 4646 + protein coding gene predicted gene 11733
Gm34502 11 117490661 to 117498295 7634 - lncRNA gene predicted gene, 34502
Tssr106062 11 117523526 to 117523544 18 + TSS region transcription start site region 106062
Gm11734 11 117523603 to 117532205 8602 + lincRNA gene predicted gene 11734
D11Dcr40 11 117573445 to 117573540 95 DNA segment DNA Segment, Chr 11, Derry C. Roopenian 40
Gm35170 11 117594911 to 117639763 44852 - lncRNA gene predicted gene, 35170
2900041M22Rik 11 117611247 to 117613417 2170 + lncRNA gene RIKEN cDNA 2900041M22 gene
Tssr112028 11 117639738 to 117639784 46 - TSS region transcription start site region 112028
Cpgi4212 11 117653682 to 117656313 2631 CpG island CpG island 4212
Tssr106063 11 117654211 to 117654258 47 + TSS region transcription start site region 106063
Tnrc6c 11 117654289 to 117763439 109150 + protein coding gene trinucleotide repeat containing 6C
Tssr112029 11 117654549 to 117654552 3 - TSS region transcription start site region 112029
Tssr3743 11 117654721 to 117654741 20 + TSS region transcription start site region 3743
Tssr106064 11 117654798 to 117654824 26 + TSS region transcription start site region 106064
Tssr106065 11 117665503 to 117665514 11 + TSS region transcription start site region 106065
2610524J22Rik 11 117727740 to 117728128 388 unclassified gene RIKEN cDNA 2610524J22 gene