Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:116883853-118814596

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472 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi4198 11 116918172 to 116919886 1714 CpG island CpG island 4198
Tssr106006 11 116918794 to 116918803 9 + TSS region transcription start site region 106006
Tssr106007 11 116918826 to 116918837 11 + TSS region transcription start site region 106007
Tssr106008 11 116918844 to 116918888 44 + TSS region transcription start site region 106008
Mgat5b 11 116918863 to 116986948 68085 + protein coding gene mannoside acetylglucosaminyltransferase 5, isoenzyme B
Tssr106009 11 116918901 to 116918908 7 + TSS region transcription start site region 106009
Gm33829 11 116933535 to 116936552 3017 + lncRNA gene predicted gene, 33829
Tssr106010 11 116966731 to 116966735 4 + TSS region transcription start site region 106010
Cpgi4199 11 116968235 to 116968579 344 CpG island CpG island 4199
Cpgi4200 11 116968911 to 116969386 475 CpG island CpG island 4200
Cpgi4201 11 117028151 to 117028483 332 CpG island CpG island 4201
D11Dcr48 11 117030580 to 117030679 99 DNA segment DNA Segment, Chr 11, Derry C. Roopenian 48
Gm11728 11 117035078 to 117040193 5115 - lincRNA gene predicted gene 11728
Tssr112011 11 117040168 to 117040180 12 - TSS region transcription start site region 112011
Tssr112012 11 117040182 to 117040200 18 - TSS region transcription start site region 112012
Tssr112013 11 117040226 to 117040235 9 - TSS region transcription start site region 112013
Tssr112014 11 117040315 to 117040325 10 - TSS region transcription start site region 112014
Gm11731 11 117058425 to 117060268 1843 + lincRNA gene predicted gene 11731
Cpgi4202 11 117076405 to 117077292 887 CpG island CpG island 4202
Tssr106011 11 117076767 to 117076840 73 + TSS region transcription start site region 106011
Snhg20 11 117076783 to 117078955 2172 + lincRNA gene small nucleolar RNA host gene 20
Tssr106012 11 117076841 to 117076852 11 + TSS region transcription start site region 106012
Tssr106013 11 117077172 to 117077205 33 + TSS region transcription start site region 106013
Tssr106014 11 117077239 to 117077245 6 + TSS region transcription start site region 106014
Gm26083 11 117077243 to 117077435 192 + snoRNA gene predicted gene, 26083
Mir6516 11 117077348 to 117077457 109 + miRNA gene microRNA 6516
Tssr112015 11 117078095 to 117078130 35 - TSS region transcription start site region 112015
Tssr112016 11 117078951 to 117078955 4 - TSS region transcription start site region 112016
Tssr112017 11 117083707 to 117083731 24 - TSS region transcription start site region 112017
Gm24323 11 117085836 to 117085912 76 + miRNA gene predicted gene, 24323
Tssr106015 11 117091989 to 117092000 11 + TSS region transcription start site region 106015
Gm11730 11 117094948 to 117097067 2119 - antisense lncRNA gene predicted gene 11730
Tssr106016 11 117109909 to 117109923 14 + TSS region transcription start site region 106016
Tssr106017 11 117109951 to 117109962 11 + TSS region transcription start site region 106017
Cpgi4203 11 117114464 to 117116133 1669 CpG island CpG island 4203
Tssr112018 11 117114953 to 117114964 11 - TSS region transcription start site region 112018
Tssr112019 11 117114981 to 117114998 17 - TSS region transcription start site region 112019
Tssr106018 11 117115133 to 117115186 53 + TSS region transcription start site region 106018
Sec14l1 11 117115172 to 117159268 44096 + protein coding gene SEC14-like lipid binding 1
Tssr106019 11 117115195 to 117115257 62 + TSS region transcription start site region 106019
Tssr106020 11 117115259 to 117115285 26 + TSS region transcription start site region 106020
Gm22667 11 117132490 to 117132817 327 + unclassified non-coding RNA gene predicted gene, 22667
Gm11745 11 117134598 to 117135045 447 + pseudogene predicted gene 11745
Tssr106021 11 117143816 to 117143865 49 + TSS region transcription start site region 106021
Tssr106022 11 117156366 to 117156385 19 + TSS region transcription start site region 106022
Tssr112020 11 117165717 to 117165742 25 - TSS region transcription start site region 112020
Stmm5 11 117167277 to 117167277 0 QTL skin tumor modifier of MSM 5
D11Mit103 11 117167319 to 117167465 146 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 103
Cpgi4204 11 117199200 to 117200159 959 CpG island CpG island 4204
Tssr106023 11 117199641 to 117199663 22 + TSS region transcription start site region 106023
Sept9 11 117199661 to 117362325 162664 + protein coding gene septin 9
Tssr106024 11 117199678 to 117199692 14 + TSS region transcription start site region 106024
Tssr106025 11 117199703 to 117199729 26 + TSS region transcription start site region 106025
Tssr106026 11 117200339 to 117200343 4 + TSS region transcription start site region 106026
Tssr106027 11 117204845 to 117204861 16 + TSS region transcription start site region 106027
Tssr106028 11 117228742 to 117228748 6 + TSS region transcription start site region 106028
Tssr106029 11 117231860 to 117231890 30 + TSS region transcription start site region 106029
Tssr106030 11 117231946 to 117231979 33 + TSS region transcription start site region 106030
Tssr106031 11 117232254 to 117232329 75 + TSS region transcription start site region 106031
Tssr106032 11 117232398 to 117232413 15 + TSS region transcription start site region 106032
D11Mit303.1 11 117238439 to 117238575 136 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 303.1
D11Mit303 11 117238606 to 117238711 105 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 303
Tssr106033 11 117241659 to 117241694 35 + TSS region transcription start site region 106033
Tssr106034 11 117249095 to 117249099 4 + TSS region transcription start site region 106034
Gm39478 11 117256929 to 117266233 9304 - lncRNA gene predicted gene, 39478
Gm16045 11 117257649 to 117263437 5788 - antisense lncRNA gene predicted gene 16045
Cpgi4205 11 117265763 to 117266772 1009 CpG island CpG island 4205
Tssr112021 11 117265986 to 117266000 14 - TSS region transcription start site region 112021
Tssr112022 11 117266034 to 117266054 20 - TSS region transcription start site region 112022
Tssr106035 11 117266157 to 117266189 32 + TSS region transcription start site region 106035
Tssr106036 11 117266216 to 117266266 50 + TSS region transcription start site region 106036
Tssr106037 11 117266274 to 117266298 24 + TSS region transcription start site region 106037
Tssr106038 11 117266410 to 117266472 62 + TSS region transcription start site region 106038
Cpgi4206 11 117267148 to 117267544 396 CpG island CpG island 4206
Tssr112023 11 117267498 to 117267511 13 - TSS region transcription start site region 112023
Tssr106039 11 117277189 to 117277200 11 + TSS region transcription start site region 106039
Tssr106040 11 117277389 to 117277402 13 + TSS region transcription start site region 106040
Tssr106041 11 117308135 to 117308158 23 + TSS region transcription start site region 106041
Tssr106042 11 117308162 to 117308184 22 + TSS region transcription start site region 106042
Tssr106043 11 117308788 to 117308826 38 + TSS region transcription start site region 106043
Gm34065 11 117321925 to 117324935 3010 - lncRNA gene predicted gene, 34065
Tssr106044 11 117326386 to 117326398 12 + TSS region transcription start site region 106044
Tssr106045 11 117326405 to 117326477 72 + TSS region transcription start site region 106045
Tssr106046 11 117326486 to 117326517 31 + TSS region transcription start site region 106046
Tssr106047 11 117326639 to 117326661 22 + TSS region transcription start site region 106047
Cpgi4207 11 117327034 to 117327205 171 CpG island CpG island 4207
Tssr112024 11 117327053 to 117327062 9 - TSS region transcription start site region 112024
Tssr106048 11 117331532 to 117331564 32 + TSS region transcription start site region 106048
Tssr106049 11 117331696 to 117331712 16 + TSS region transcription start site region 106049
Tssr106050 11 117331719 to 117331739 20 + TSS region transcription start site region 106050
Cpgi4208 11 117332018 to 117332656 638 CpG island CpG island 4208
Tssr106051 11 117332194 to 117332210 16 + TSS region transcription start site region 106051
Tssr106052 11 117332277 to 117332284 7 + TSS region transcription start site region 106052
Tssr106053 11 117332303 to 117332328 25 + TSS region transcription start site region 106053
Tssr106054 11 117332335 to 117332348 13 + TSS region transcription start site region 106054
Tssr106055 11 117332379 to 117332388 9 + TSS region transcription start site region 106055
Tssr106056 11 117332398 to 117332401 3 + TSS region transcription start site region 106056
Tssr106057 11 117332410 to 117332454 44 + TSS region transcription start site region 106057
Tssr106058 11 117333478 to 117333488 10 + TSS region transcription start site region 106058
Tssr3742 11 117334163 to 117334185 22 - TSS region transcription start site region 3742
Tssr112025 11 117360476 to 117360492 16 - TSS region transcription start site region 112025
Tssr112026 11 117360553 to 117360566 13 - TSS region transcription start site region 112026
Tssr106059 11 117361261 to 117361277 16 + TSS region transcription start site region 106059
Tssr106060 11 117361305 to 117361329 24 + TSS region transcription start site region 106060
A930024O17Rik 11 117384572 to 117385378 806 unclassified gene RIKEN cDNA A930024O17 gene
Cpgi4209 11 117394367 to 117394936 569 CpG island CpG island 4209
Gm34128 11 117407838 to 117411284 3446 - lncRNA gene predicted gene, 34128
Cpgi4210 11 117407849 to 117408126 277 CpG island CpG island 4210
Gm11729 11 117414389 to 117415368 979 + lincRNA gene predicted gene 11729
Gm8624 11 117420640 to 117421717 1077 - pseudogene predicted gene 8624
Tssr112027 11 117421157 to 117421162 5 - TSS region transcription start site region 112027
Gm11732 11 117426178 to 117438866 12688 + lncRNA gene predicted gene 11732
Tssr106061 11 117426202 to 117426212 10 + TSS region transcription start site region 106061
Gm46264 11 117461620 to 117463706 2086 - lncRNA gene predicted gene, 46264
Gm34418 11 117479875 to 117482597 2722 - lincRNA gene predicted gene, 34418
Cpgi4211 11 117482554 to 117482855 301 CpG island CpG island 4211
Gm11733 11 117484368 to 117489014 4646 + protein coding gene predicted gene 11733
Gm34502 11 117490661 to 117498295 7634 - lncRNA gene predicted gene, 34502
Tssr106062 11 117523526 to 117523544 18 + TSS region transcription start site region 106062
Gm11734 11 117523603 to 117532205 8602 + lincRNA gene predicted gene 11734
D11Dcr40 11 117573445 to 117573540 95 DNA segment DNA Segment, Chr 11, Derry C. Roopenian 40
Gm35170 11 117594911 to 117639763 44852 - lncRNA gene predicted gene, 35170
2900041M22Rik 11 117611247 to 117613417 2170 + lncRNA gene RIKEN cDNA 2900041M22 gene
Tssr112028 11 117639738 to 117639784 46 - TSS region transcription start site region 112028
Cpgi4212 11 117653682 to 117656313 2631 CpG island CpG island 4212
Tssr106063 11 117654211 to 117654258 47 + TSS region transcription start site region 106063
Tnrc6c 11 117654289 to 117763439 109150 + protein coding gene trinucleotide repeat containing 6C
Tssr112029 11 117654549 to 117654552 3 - TSS region transcription start site region 112029
Tssr3743 11 117654721 to 117654741 20 + TSS region transcription start site region 3743
Tssr106064 11 117654798 to 117654824 26 + TSS region transcription start site region 106064
Tssr106065 11 117665503 to 117665514 11 + TSS region transcription start site region 106065
2610524J22Rik 11 117727740 to 117728128 388 unclassified gene RIKEN cDNA 2610524J22 gene
Tssr106066 11 117762215 to 117762220 5 + TSS region transcription start site region 106066
Tssr106067 11 117762439 to 117762458 19 + TSS region transcription start site region 106067
Tssr106068 11 117762498 to 117762513 15 + TSS region transcription start site region 106068
Tmc6 11 117765985 to 117782193 16208 - protein coding gene transmembrane channel-like gene family 6
Tssr112030 11 117774754 to 117774765 11 - TSS region transcription start site region 112030
Tssr112031 11 117775038 to 117775049 11 - TSS region transcription start site region 112031
Tssr112032 11 117778988 to 117779029 41 - TSS region transcription start site region 112032
Cpgi4213 11 117779564 to 117780908 1344 CpG island CpG island 4213
Tssr112033 11 117779605 to 117779631 26 - TSS region transcription start site region 112033
Tssr112034 11 117780588 to 117780606 18 - TSS region transcription start site region 112034
Tssr112035 11 117780613 to 117780629 16 - TSS region transcription start site region 112035
Tssr112036 11 117780630 to 117780688 58 - TSS region transcription start site region 112036
Tmc8 11 117782076 to 117793110 11034 + protein coding gene transmembrane channel-like gene family 8
Tssr106069 11 117782112 to 117782130 18 + TSS region transcription start site region 106069
Tssr112037 11 117782155 to 117782167 12 - TSS region transcription start site region 112037
Tssr112038 11 117782182 to 117782203 21 - TSS region transcription start site region 112038
Tssr112039 11 117782206 to 117782221 15 - TSS region transcription start site region 112039
Tssr106070 11 117782281 to 117782337 56 + TSS region transcription start site region 106070
Tssr106071 11 117782358 to 117782381 23 + TSS region transcription start site region 106071
Cpgi4214 11 117782969 to 117783652 683 CpG island CpG island 4214
Gm11723 11 117783326 to 117785055 1729 - antisense lncRNA gene predicted gene 11723
Gm11724 11 117789897 to 117791313 1416 - antisense lncRNA gene predicted gene 11724
Cpgi4215 11 117789950 to 117790480 530 CpG island CpG island 4215
Tssr106072 11 117790702 to 117790703 1 + TSS region transcription start site region 106072
Tssr106073 11 117790889 to 117790927 38 + TSS region transcription start site region 106073
Tssr106074 11 117792455 to 117792466 11 + TSS region transcription start site region 106074
Cpgi4216 11 117792479 to 117792828 349 CpG island CpG island 4216
6030468B19Rik 11 117797660 to 117807301 9641 + protein coding gene RIKEN cDNA 6030468B19 gene
Tssr106075 11 117797707 to 117797723 16 + TSS region transcription start site region 106075
Tssr106076 11 117797726 to 117797748 22 + TSS region transcription start site region 106076
Tssr106077 11 117798392 to 117798422 30 + TSS region transcription start site region 106077
Cpgi4217 11 117809328 to 117810835 1507 CpG island CpG island 4217
Tssr106078 11 117809653 to 117809685 32 + TSS region transcription start site region 106078
Syngr2 11 117809668 to 117814283 4615 + protein coding gene synaptogyrin 2
Gm20708 11 117809668 to 117839904 30236 + protein coding gene predicted gene 20708
Tssr106079 11 117809687 to 117809703 16 + TSS region transcription start site region 106079
Tssr106080 11 117813292 to 117813303 11 + TSS region transcription start site region 106080
Tssr112040 11 117813377 to 117813437 60 - TSS region transcription start site region 112040
Tssr106081 11 117813413 to 117813421 8 + TSS region transcription start site region 106081
Tssr112041 11 117813442 to 117813466 24 - TSS region transcription start site region 112041
Tssr106082 11 117813447 to 117813464 17 + TSS region transcription start site region 106082
Tssr112042 11 117813481 to 117813495 14 - TSS region transcription start site region 112042
Tssr106083 11 117813658 to 117813679 21 + TSS region transcription start site region 106083
Tssr106084 11 117813701 to 117813736 35 + TSS region transcription start site region 106084
Tssr112043 11 117813723 to 117813770 47 - TSS region transcription start site region 112043
Tssr106085 11 117813755 to 117813766 11 + TSS region transcription start site region 106085
Tssr106086 11 117813815 to 117813835 20 + TSS region transcription start site region 106086
Tk1 11 117815526 to 117826092 10566 - protein coding gene thymidine kinase 1
Tssr112044 11 117819103 to 117819143 40 - TSS region transcription start site region 112044
Cpgi4218 11 117825695 to 117826089 394 CpG island CpG island 4218
Tssr112045 11 117825767 to 117825776 9 - TSS region transcription start site region 112045
Tssr112046 11 117825784 to 117825872 88 - TSS region transcription start site region 112046
Tssr106087 11 117825885 to 117825926 41 + TSS region transcription start site region 106087
Afmid 11 117825924 to 117839908 13984 + protein coding gene arylformamidase
Tssr106088 11 117825933 to 117825969 36 + TSS region transcription start site region 106088
Tssr112047 11 117827397 to 117827406 9 - TSS region transcription start site region 112047
Tssr112048 11 117828271 to 117828289 18 - TSS region transcription start site region 112048
Tssr106089 11 117829370 to 117829382 12 + TSS region transcription start site region 106089
Tssr106090 11 117829490 to 117829510 20 + TSS region transcription start site region 106090
Tssr106091 11 117830648 to 117830662 14 + TSS region transcription start site region 106091
Tssr106092 11 117832239 to 117832267 28 + TSS region transcription start site region 106092
Tssr106093 11 117832286 to 117832299 13 + TSS region transcription start site region 106093
Cpgi4219 11 117832619 to 117832792 173 CpG island CpG island 4219
Cpgi4220 11 117848853 to 117849596 743 CpG island CpG island 4220
Tssr112049 11 117849078 to 117849131 53 - TSS region transcription start site region 112049
Tssr106094 11 117849223 to 117849234 11 + TSS region transcription start site region 106094
Birc5 11 117849251 to 117855743 6492 + protein coding gene baculoviral IAP repeat-containing 5
Tssr106095 11 117849273 to 117849282 9 + TSS region transcription start site region 106095