Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:116602243-117552435

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246 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Rhbdf2 11 116598165 to 116627019 28854 - protein coding gene rhomboid 5 homolog 2
Tssr111945 11 116605027 to 116605045 18 - TSS region transcription start site region 111945
Tssr111946 11 116610473 to 116610485 12 - TSS region transcription start site region 111946
Tssr3740 11 116615907 to 116615909 2 - TSS region transcription start site region 3740
Tssr111947 11 116617600 to 116617624 24 - TSS region transcription start site region 111947
Cpgi4190 11 116623673 to 116624739 1066 CpG island CpG island 4190
Tssr111948 11 116623785 to 116623817 32 - TSS region transcription start site region 111948
Tssr111949 11 116624209 to 116624227 18 - TSS region transcription start site region 111949
Tssr111950 11 116624238 to 116624256 18 - TSS region transcription start site region 111950
Tssr111951 11 116624262 to 116624273 11 - TSS region transcription start site region 111951
Tssr111952 11 116624300 to 116624309 9 - TSS region transcription start site region 111952
Tssr105973 11 116624388 to 116624405 17 + TSS region transcription start site region 105973
Tssr105974 11 116624408 to 116624430 22 + TSS region transcription start site region 105974
Tssr105975 11 116624440 to 116624451 11 + TSS region transcription start site region 105975
Tssr105976 11 116624452 to 116624458 6 + TSS region transcription start site region 105976
Tssr111953 11 116626868 to 116626875 7 - TSS region transcription start site region 111953
Tssr111954 11 116626925 to 116626937 12 - TSS region transcription start site region 111954
Tssr111955 11 116626951 to 116626960 9 - TSS region transcription start site region 111955
Cygb 11 116645595 to 116654313 8718 - protein coding gene cytoglobin
Cpgi4191 11 116653495 to 116654710 1215 CpG island CpG island 4191
Prcd 11 116653889 to 116668389 14500 + protein coding gene photoreceptor disc component
Tssr111956 11 116653936 to 116653995 59 - TSS region transcription start site region 111956
Tssr111957 11 116654002 to 116654023 21 - TSS region transcription start site region 111957
Tssr111958 11 116654038 to 116654068 30 - TSS region transcription start site region 111958
Tssr111959 11 116654075 to 116654082 7 - TSS region transcription start site region 111959
Tssr111960 11 116654245 to 116654325 80 - TSS region transcription start site region 111960
Tssr105977 11 116657106 to 116657117 11 + TSS region transcription start site region 105977
Tssr105978 11 116657123 to 116657140 17 + TSS region transcription start site region 105978
Tssr3741 11 116657151 to 116657152 1 + TSS region transcription start site region 3741
Tssr105979 11 116657513 to 116657536 23 + TSS region transcription start site region 105979
Cpgi4192 11 116657915 to 116658097 182 CpG island CpG island 4192
Cpgi4193 11 116671204 to 116672396 1192 CpG island CpG island 4193
Tssr111961 11 116671554 to 116671573 19 - TSS region transcription start site region 111961
Tssr105980 11 116671658 to 116671694 36 + TSS region transcription start site region 105980
1810032O08Rik 11 116671660 to 116675798 4138 + protein coding gene RIKEN cDNA 1810032O08 gene
Snord1c 11 116672506 to 116672581 75 + snoRNA gene small nucleolar RNA, C/D box 1C
Snord1b 11 116674148 to 116674222 74 + snoRNA gene small nucleolar RNA, C/D box 1B
Snord1a 11 116674598 to 116674671 73 + snoRNA gene small nucleolar RNA, C/D box 1A
St6galnac2 11 116676703 to 116695234 18531 - protein coding gene ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 2
Tssr111962 11 116677442 to 116677448 6 - TSS region transcription start site region 111962
Tssr105981 11 116678254 to 116678255 1 + TSS region transcription start site region 105981
Tssr111963 11 116679185 to 116679191 6 - TSS region transcription start site region 111963
Tssr111964 11 116679193 to 116679203 10 - TSS region transcription start site region 111964
Tssr111965 11 116679221 to 116679226 5 - TSS region transcription start site region 111965
Tssr111966 11 116679982 to 116679999 17 - TSS region transcription start site region 111966
Tssr111967 11 116680056 to 116680068 12 - TSS region transcription start site region 111967
Tssr111968 11 116680075 to 116680086 11 - TSS region transcription start site region 111968
Tssr105982 11 116680278 to 116680293 15 + TSS region transcription start site region 105982
Tssr111969 11 116680596 to 116680601 5 - TSS region transcription start site region 111969
Tssr111970 11 116680704 to 116680713 9 - TSS region transcription start site region 111970
Tssr111971 11 116680874 to 116680914 40 - TSS region transcription start site region 111971
Cpgi4194 11 116694121 to 116695026 905 CpG island CpG island 4194
Tssr111972 11 116694555 to 116694560 5 - TSS region transcription start site region 111972
Tssr111973 11 116694580 to 116694668 88 - TSS region transcription start site region 111973
Tssr111974 11 116694779 to 116694800 21 - TSS region transcription start site region 111974
Tssr111975 11 116694802 to 116694882 80 - TSS region transcription start site region 111975
Tssr111976 11 116695229 to 116695242 13 - TSS region transcription start site region 111976
Tssr111977 11 116705160 to 116705175 15 - TSS region transcription start site region 111977
Tssr111978 11 116725195 to 116725202 7 - TSS region transcription start site region 111978
Tssr105983 11 116725433 to 116725437 4 + TSS region transcription start site region 105983
Gm11735 11 116739062 to 116749833 10771 - pseudogene predicted gene 11735
Tssr111979 11 116749908 to 116749938 30 - TSS region transcription start site region 111979
Tssr105984 11 116751044 to 116751081 37 + TSS region transcription start site region 105984
Tssr105985 11 116751706 to 116751721 15 + TSS region transcription start site region 105985
BC018473 11 116752167 to 116757883 5716 + antisense lncRNA gene cDNA sequence BC018473
Tssr105986 11 116752228 to 116752235 7 + TSS region transcription start site region 105986
Tssr105987 11 116752312 to 116752315 3 + TSS region transcription start site region 105987
Tssr105988 11 116752324 to 116752350 26 + TSS region transcription start site region 105988
Tssr105989 11 116752356 to 116752363 7 + TSS region transcription start site region 105989
Tssr105990 11 116752650 to 116752669 19 + TSS region transcription start site region 105990
Tssr105991 11 116752933 to 116752938 5 + TSS region transcription start site region 105991
Tssr105992 11 116753177 to 116753188 11 + TSS region transcription start site region 105992
Tssr105993 11 116753275 to 116753287 12 + TSS region transcription start site region 105993
St6galnac1 11 116765025 to 116775507 10482 - protein coding gene ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 1
Mxra7 11 116803400 to 116828068 24668 - protein coding gene matrix-remodelling associated 7
Tssr111980 11 116806977 to 116806981 4 - TSS region transcription start site region 111980
Tssr111981 11 116807144 to 116807153 9 - TSS region transcription start site region 111981
Tssr111982 11 116807650 to 116807661 11 - TSS region transcription start site region 111982
Tssr111983 11 116807680 to 116807758 78 - TSS region transcription start site region 111983
Tssr111984 11 116807769 to 116807781 12 - TSS region transcription start site region 111984
Tssr105994 11 116807869 to 116807892 23 + TSS region transcription start site region 105994
Tssr111985 11 116808157 to 116808162 5 - TSS region transcription start site region 111985
Tssr105995 11 116813221 to 116813238 17 + TSS region transcription start site region 105995
Tssr111986 11 116816213 to 116816247 34 - TSS region transcription start site region 111986
Cpgi4195 11 116827079 to 116828508 1429 CpG island CpG island 4195
Tssr111987 11 116828000 to 116828071 71 - TSS region transcription start site region 111987
Jmjd6 11 116837432 to 116843449 6017 - protein coding gene jumonji domain containing 6
Gm27401 11 116839794 to 116839966 172 - unclassified non-coding RNA gene predicted gene, 27401
Cpgi4196 11 116842464 to 116844100 1636 CpG island CpG island 4196
Tssr111988 11 116842726 to 116842743 17 - TSS region transcription start site region 111988
Tssr111989 11 116842819 to 116842828 9 - TSS region transcription start site region 111989
Tssr111990 11 116842831 to 116842846 15 - TSS region transcription start site region 111990
Tssr111991 11 116842848 to 116842869 21 - TSS region transcription start site region 111991
Tssr111992 11 116842875 to 116842893 18 - TSS region transcription start site region 111992
Tssr111993 11 116843124 to 116843134 10 - TSS region transcription start site region 111993
Tssr111994 11 116843151 to 116843162 11 - TSS region transcription start site region 111994
Tssr111995 11 116843163 to 116843232 69 - TSS region transcription start site region 111995
Tssr111996 11 116843285 to 116843299 14 - TSS region transcription start site region 111996
Tssr111997 11 116843312 to 116843386 74 - TSS region transcription start site region 111997
Tssr111998 11 116843455 to 116843505 50 - TSS region transcription start site region 111998
Mettl23 11 116843515 to 116849740 6225 + protein coding gene methyltransferase like 23
Tssr105996 11 116843519 to 116843569 50 + TSS region transcription start site region 105996
Tssr105997 11 116843572 to 116843603 31 + TSS region transcription start site region 105997
Tssr105998 11 116843651 to 116843677 26 + TSS region transcription start site region 105998
Tssr105999 11 116843707 to 116843730 23 + TSS region transcription start site region 105999
Srsf2 11 116849901 to 116853094 3193 - protein coding gene serine/arginine-rich splicing factor 2
Tssr111999 11 116850621 to 116850648 27 - TSS region transcription start site region 111999
Tssr112000 11 116850911 to 116850931 20 - TSS region transcription start site region 112000
Tssr112001 11 116851190 to 116851194 4 - TSS region transcription start site region 112001
Tssr112002 11 116851258 to 116851271 13 - TSS region transcription start site region 112002
Tssr112003 11 116851279 to 116851315 36 - TSS region transcription start site region 112003
Tssr112004 11 116851444 to 116851475 31 - TSS region transcription start site region 112004
Cpgi4197 11 116851966 to 116854108 2142 CpG island CpG island 4197
Tssr112005 11 116852113 to 116852153 40 - TSS region transcription start site region 112005
Tssr112006 11 116852158 to 116852192 34 - TSS region transcription start site region 112006
Tssr106000 11 116852184 to 116852220 36 + TSS region transcription start site region 106000
Tssr112007 11 116852202 to 116852258 56 - TSS region transcription start site region 112007
Tssr112008 11 116852323 to 116852364 41 - TSS region transcription start site region 112008
Tssr112009 11 116852428 to 116852456 28 - TSS region transcription start site region 112009
Mfsd11 11 116852440 to 116875635 23195 + protein coding gene major facilitator superfamily domain containing 11
Tssr106001 11 116852485 to 116852574 89 + TSS region transcription start site region 106001
Tssr112010 11 116853083 to 116853099 16 - TSS region transcription start site region 112010
Tssr106002 11 116853254 to 116853272 18 + TSS region transcription start site region 106002
Tssr106003 11 116853457 to 116853481 24 + TSS region transcription start site region 106003
Tssr106004 11 116853752 to 116853836 84 + TSS region transcription start site region 106004
Tssr106005 11 116868342 to 116868437 95 + TSS region transcription start site region 106005
Cpgi4198 11 116918172 to 116919886 1714 CpG island CpG island 4198
Tssr106006 11 116918794 to 116918803 9 + TSS region transcription start site region 106006
Tssr106007 11 116918826 to 116918837 11 + TSS region transcription start site region 106007
Tssr106008 11 116918844 to 116918888 44 + TSS region transcription start site region 106008
Mgat5b 11 116918863 to 116986948 68085 + protein coding gene mannoside acetylglucosaminyltransferase 5, isoenzyme B
Tssr106009 11 116918901 to 116918908 7 + TSS region transcription start site region 106009
Gm33829 11 116933535 to 116936552 3017 + lncRNA gene predicted gene, 33829
Tssr106010 11 116966731 to 116966735 4 + TSS region transcription start site region 106010
Cpgi4199 11 116968235 to 116968579 344 CpG island CpG island 4199
Cpgi4200 11 116968911 to 116969386 475 CpG island CpG island 4200
Cpgi4201 11 117028151 to 117028483 332 CpG island CpG island 4201
D11Dcr48 11 117030580 to 117030679 99 DNA segment DNA Segment, Chr 11, Derry C. Roopenian 48
Gm11728 11 117035078 to 117040193 5115 - lincRNA gene predicted gene 11728
Tssr112011 11 117040168 to 117040180 12 - TSS region transcription start site region 112011
Tssr112012 11 117040182 to 117040200 18 - TSS region transcription start site region 112012
Tssr112013 11 117040226 to 117040235 9 - TSS region transcription start site region 112013
Tssr112014 11 117040315 to 117040325 10 - TSS region transcription start site region 112014
Gm11731 11 117058425 to 117060268 1843 + lincRNA gene predicted gene 11731
Cpgi4202 11 117076405 to 117077292 887 CpG island CpG island 4202
Tssr106011 11 117076767 to 117076840 73 + TSS region transcription start site region 106011
Snhg20 11 117076783 to 117078955 2172 + lincRNA gene small nucleolar RNA host gene 20
Tssr106012 11 117076841 to 117076852 11 + TSS region transcription start site region 106012
Tssr106013 11 117077172 to 117077205 33 + TSS region transcription start site region 106013
Tssr106014 11 117077239 to 117077245 6 + TSS region transcription start site region 106014
Gm26083 11 117077243 to 117077435 192 + snoRNA gene predicted gene, 26083
Mir6516 11 117077348 to 117077457 109 + miRNA gene microRNA 6516
Tssr112015 11 117078095 to 117078130 35 - TSS region transcription start site region 112015
Tssr112016 11 117078951 to 117078955 4 - TSS region transcription start site region 112016
Tssr112017 11 117083707 to 117083731 24 - TSS region transcription start site region 112017
Gm24323 11 117085836 to 117085912 76 + miRNA gene predicted gene, 24323
Tssr106015 11 117091989 to 117092000 11 + TSS region transcription start site region 106015
Gm11730 11 117094948 to 117097067 2119 - antisense lncRNA gene predicted gene 11730
Tssr106016 11 117109909 to 117109923 14 + TSS region transcription start site region 106016
Tssr106017 11 117109951 to 117109962 11 + TSS region transcription start site region 106017
Cpgi4203 11 117114464 to 117116133 1669 CpG island CpG island 4203
Tssr112018 11 117114953 to 117114964 11 - TSS region transcription start site region 112018
Tssr112019 11 117114981 to 117114998 17 - TSS region transcription start site region 112019
Tssr106018 11 117115133 to 117115186 53 + TSS region transcription start site region 106018
Sec14l1 11 117115172 to 117159268 44096 + protein coding gene SEC14-like lipid binding 1
Tssr106019 11 117115195 to 117115257 62 + TSS region transcription start site region 106019
Tssr106020 11 117115259 to 117115285 26 + TSS region transcription start site region 106020
Gm22667 11 117132490 to 117132817 327 + unclassified non-coding RNA gene predicted gene, 22667
Gm11745 11 117134598 to 117135045 447 + pseudogene predicted gene 11745
Tssr106021 11 117143816 to 117143865 49 + TSS region transcription start site region 106021
Tssr106022 11 117156366 to 117156385 19 + TSS region transcription start site region 106022
Tssr112020 11 117165717 to 117165742 25 - TSS region transcription start site region 112020
Stmm5 11 117167277 to 117167277 0 QTL skin tumor modifier of MSM 5
D11Mit103 11 117167319 to 117167465 146 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 103
Cpgi4204 11 117199200 to 117200159 959 CpG island CpG island 4204
Tssr106023 11 117199641 to 117199663 22 + TSS region transcription start site region 106023
Sept9 11 117199661 to 117362325 162664 + protein coding gene septin 9
Tssr106024 11 117199678 to 117199692 14 + TSS region transcription start site region 106024
Tssr106025 11 117199703 to 117199729 26 + TSS region transcription start site region 106025
Tssr106026 11 117200339 to 117200343 4 + TSS region transcription start site region 106026
Tssr106027 11 117204845 to 117204861 16 + TSS region transcription start site region 106027
Tssr106028 11 117228742 to 117228748 6 + TSS region transcription start site region 106028
Tssr106029 11 117231860 to 117231890 30 + TSS region transcription start site region 106029
Tssr106030 11 117231946 to 117231979 33 + TSS region transcription start site region 106030
Tssr106031 11 117232254 to 117232329 75 + TSS region transcription start site region 106031
Tssr106032 11 117232398 to 117232413 15 + TSS region transcription start site region 106032
D11Mit303.1 11 117238439 to 117238575 136 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 303.1
D11Mit303 11 117238606 to 117238711 105 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 303
Tssr106033 11 117241659 to 117241694 35 + TSS region transcription start site region 106033
Tssr106034 11 117249095 to 117249099 4 + TSS region transcription start site region 106034
Gm39478 11 117256929 to 117266233 9304 - lncRNA gene predicted gene, 39478
Gm16045 11 117257649 to 117263437 5788 - antisense lncRNA gene predicted gene 16045
Cpgi4205 11 117265763 to 117266772 1009 CpG island CpG island 4205
Tssr112021 11 117265986 to 117266000 14 - TSS region transcription start site region 112021
Tssr112022 11 117266034 to 117266054 20 - TSS region transcription start site region 112022
Tssr106035 11 117266157 to 117266189 32 + TSS region transcription start site region 106035
Tssr106036 11 117266216 to 117266266 50 + TSS region transcription start site region 106036
Tssr106037 11 117266274 to 117266298 24 + TSS region transcription start site region 106037
Tssr106038 11 117266410 to 117266472 62 + TSS region transcription start site region 106038
Cpgi4206 11 117267148 to 117267544 396 CpG island CpG island 4206