Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:116333285-116733303

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152 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Foxj1 11 116330704 to 116335399 4695 - protein coding gene forkhead box J1
Cpgi4180 11 116333935 to 116336041 2106 CpG island CpG island 4180
Tssr111905 11 116334147 to 116334179 32 - TSS region transcription start site region 111905
Tssr111906 11 116334208 to 116334234 26 - TSS region transcription start site region 111906
Tssr111907 11 116335350 to 116335365 15 - TSS region transcription start site region 111907
Tssr111908 11 116335384 to 116335399 15 - TSS region transcription start site region 111908
Tssr111909 11 116335400 to 116335415 15 - TSS region transcription start site region 111909
Rnf157 11 116336353 to 116413032 76679 - protein coding gene ring finger protein 157
Tssr111910 11 116359060 to 116359103 43 - TSS region transcription start site region 111910
Tssr111911 11 116359105 to 116359126 21 - TSS region transcription start site region 111911
Tssr3737 11 116359268 to 116359282 14 - TSS region transcription start site region 3737
Tssr111912 11 116359292 to 116359349 57 - TSS region transcription start site region 111912
Tssr111913 11 116359351 to 116359374 23 - TSS region transcription start site region 111913
Tssr111914 11 116359426 to 116359444 18 - TSS region transcription start site region 111914
Tssr111915 11 116359460 to 116359478 18 - TSS region transcription start site region 111915
Tssr111916 11 116359480 to 116359510 30 - TSS region transcription start site region 111916
Tssr111917 11 116359989 to 116360003 14 - TSS region transcription start site region 111917
D11Dcr30 11 116363355 to 116363455 100 DNA segment DNA Segment, Chr 11, Derry C. Roopenian 30
Alcw8 11 116363361 to 116363500 139 QTL alcohol withdrawal 8
D11Mit203 11 116363361 to 116363500 139 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 203
D11Mit203.1 11 116363482 to 116363636 154 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 203.1
Tssr105954 11 116382705 to 116382717 12 + TSS region transcription start site region 105954
Rps11-ps2 11 116382750 to 116383205 455 + pseudogene ribosomal protein S11, pseudogene 2
Cpgi4181 11 116412127 to 116413594 1467 CpG island CpG island 4181
Tssr111918 11 116412965 to 116413000 35 - TSS region transcription start site region 111918
Tssr111919 11 116413015 to 116413069 54 - TSS region transcription start site region 111919
n-TAagc3 11 116415979 to 116416051 72 - tRNA gene nuclear encoded tRNA alanine 3 (anticodon AGC)
Tssr111920 11 116426028 to 116426062 34 - TSS region transcription start site region 111920
Tssr111921 11 116429486 to 116429529 43 - TSS region transcription start site region 111921
Cpgi4182 11 116433728 to 116435173 1445 CpG island CpG island 4182
Tssr111922 11 116433792 to 116433822 30 - TSS region transcription start site region 111922
Tssr105955 11 116434067 to 116434078 11 + TSS region transcription start site region 105955
Tssr105956 11 116434087 to 116434106 19 + TSS region transcription start site region 105956
Ubald2 11 116434094 to 116439077 4983 + protein coding gene UBA-like domain containing 2
Tssr105957 11 116434194 to 116434227 33 + TSS region transcription start site region 105957
Tssr105958 11 116434232 to 116434254 22 + TSS region transcription start site region 105958
Tssr105959 11 116436972 to 116437020 48 + TSS region transcription start site region 105959
Qrich2 11 116441325 to 116466241 24916 - protein coding gene glutamine rich 2
Cpgi4183 11 116446434 to 116446749 315 CpG island CpG island 4183
Tssr111923 11 116448394 to 116448406 12 - TSS region transcription start site region 111923
Tssr111924 11 116459930 to 116459947 17 - TSS region transcription start site region 111924
Tssr111925 11 116459957 to 116459972 15 - TSS region transcription start site region 111925
Cpgi4184 11 116466003 to 116466437 434 CpG island CpG island 4184
Tssr111926 11 116466198 to 116466202 4 - TSS region transcription start site region 111926
Tssr111927 11 116466219 to 116466241 22 - TSS region transcription start site region 111927
Tssr111928 11 116466249 to 116466251 2 - TSS region transcription start site region 111928
Gm11739 11 116466319 to 116474274 7955 + antisense lncRNA gene predicted gene 11739
Prpsap1 11 116470845 to 116494202 23357 - protein coding gene phosphoribosyl pyrophosphate synthetase-associated protein 1
Tssr111929 11 116479727 to 116479750 23 - TSS region transcription start site region 111929
Tssr111930 11 116488331 to 116488336 5 - TSS region transcription start site region 111930
Cpgi4185 11 116489725 to 116490873 1148 CpG island CpG island 4185
Tssr111931 11 116490161 to 116490168 7 - TSS region transcription start site region 111931
Tssr111932 11 116490278 to 116490289 11 - TSS region transcription start site region 111932
Tssr111933 11 116490299 to 116490365 66 - TSS region transcription start site region 111933
Tssr111934 11 116494581 to 116494594 13 - TSS region transcription start site region 111934
Tssr111935 11 116494603 to 116494632 29 - TSS region transcription start site region 111935
Cpgi4186 11 116498604 to 116498885 281 CpG island CpG island 4186
Rpl36-ps1 11 116504536 to 116504838 302 + pseudogene ribosomal protein L36, pseudogene 1
Cpgi4187 11 116515463 to 116515811 348 CpG island CpG island 4187
Gm29292 11 116529215 to 116533077 3862 - antisense lncRNA gene predicted gene 29292
Tssr111936 11 116529562 to 116529566 4 - TSS region transcription start site region 111936
Sphk1 11 116530925 to 116536674 5749 + protein coding gene sphingosine kinase 1
Tssr105960 11 116531097 to 116531103 6 + TSS region transcription start site region 105960
Cpgi4188 11 116531226 to 116534444 3218 CpG island CpG island 4188
Tssr105961 11 116531826 to 116531842 16 + TSS region transcription start site region 105961
Tssr105962 11 116531843 to 116531874 31 + TSS region transcription start site region 105962
Tssr105963 11 116531886 to 116531896 10 + TSS region transcription start site region 105963
Tssr105964 11 116531996 to 116532014 18 + TSS region transcription start site region 105964
Tssr105965 11 116532422 to 116532425 3 + TSS region transcription start site region 105965
Tssr105966 11 116532441 to 116532478 37 + TSS region transcription start site region 105966
Tssr3738 11 116532498 to 116532501 3 + TSS region transcription start site region 3738
Tssr105967 11 116532550 to 116532561 11 + TSS region transcription start site region 105967
Tssr111937 11 116533069 to 116533123 54 - TSS region transcription start site region 111937
Tssr105968 11 116533257 to 116533275 18 + TSS region transcription start site region 105968
Tssr105969 11 116533285 to 116533303 18 + TSS region transcription start site region 105969
Tssr111938 11 116533695 to 116533709 14 - TSS region transcription start site region 111938
Tssr105970 11 116533962 to 116533972 10 + TSS region transcription start site region 105970
Tssr3739 11 116533972 to 116534004 32 - TSS region transcription start site region 3739
Tssr105971 11 116534037 to 116534054 17 + TSS region transcription start site region 105971
Tssr105972 11 116534058 to 116534069 11 + TSS region transcription start site region 105972
Ube2o 11 116537740 to 116581447 43707 - protein coding gene ubiquitin-conjugating enzyme E2O
Tssr111939 11 116543406 to 116543408 2 - TSS region transcription start site region 111939
Tssr111940 11 116549368 to 116549409 41 - TSS region transcription start site region 111940
Gm11742 11 116550418 to 116550650 232 + pseudogene predicted gene 11742
Tssr111941 11 116579627 to 116579631 4 - TSS region transcription start site region 111941
Cpgi4189 11 116580525 to 116581911 1386 CpG island CpG island 4189
Tssr111942 11 116581446 to 116581472 26 - TSS region transcription start site region 111942
Tssr111943 11 116581475 to 116581513 38 - TSS region transcription start site region 111943
1700074G04Rik 11 116589635 to 116589780 145 unclassified gene RIKEN cDNA 1700074G04 gene
Aanat 11 116591721 to 116597680 5959 + protein coding gene arylalkylamine N-acetyltransferase
D11Mit102 11 116593049 to 116593210 161 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 102
Rhbdf2 11 116598165 to 116627019 28854 - protein coding gene rhomboid 5 homolog 2
Tssr111944 11 116598457 to 116598477 20 - TSS region transcription start site region 111944
Tssr111945 11 116605027 to 116605045 18 - TSS region transcription start site region 111945
Tssr111946 11 116610473 to 116610485 12 - TSS region transcription start site region 111946
Tssr3740 11 116615907 to 116615909 2 - TSS region transcription start site region 3740
Tssr111947 11 116617600 to 116617624 24 - TSS region transcription start site region 111947
Cpgi4190 11 116623673 to 116624739 1066 CpG island CpG island 4190
Tssr111948 11 116623785 to 116623817 32 - TSS region transcription start site region 111948
Tssr111949 11 116624209 to 116624227 18 - TSS region transcription start site region 111949
Tssr111950 11 116624238 to 116624256 18 - TSS region transcription start site region 111950
Tssr111951 11 116624262 to 116624273 11 - TSS region transcription start site region 111951
Tssr111952 11 116624300 to 116624309 9 - TSS region transcription start site region 111952
Tssr105973 11 116624388 to 116624405 17 + TSS region transcription start site region 105973
Tssr105974 11 116624408 to 116624430 22 + TSS region transcription start site region 105974
Tssr105975 11 116624440 to 116624451 11 + TSS region transcription start site region 105975
Tssr105976 11 116624452 to 116624458 6 + TSS region transcription start site region 105976
Tssr111953 11 116626868 to 116626875 7 - TSS region transcription start site region 111953
Tssr111954 11 116626925 to 116626937 12 - TSS region transcription start site region 111954
Tssr111955 11 116626951 to 116626960 9 - TSS region transcription start site region 111955
Cygb 11 116645595 to 116654313 8718 - protein coding gene cytoglobin
Cpgi4191 11 116653495 to 116654710 1215 CpG island CpG island 4191
Prcd 11 116653889 to 116668389 14500 + protein coding gene photoreceptor disc component
Tssr111956 11 116653936 to 116653995 59 - TSS region transcription start site region 111956
Tssr111957 11 116654002 to 116654023 21 - TSS region transcription start site region 111957
Tssr111958 11 116654038 to 116654068 30 - TSS region transcription start site region 111958
Tssr111959 11 116654075 to 116654082 7 - TSS region transcription start site region 111959
Tssr111960 11 116654245 to 116654325 80 - TSS region transcription start site region 111960
Tssr105977 11 116657106 to 116657117 11 + TSS region transcription start site region 105977
Tssr105978 11 116657123 to 116657140 17 + TSS region transcription start site region 105978
Tssr3741 11 116657151 to 116657152 1 + TSS region transcription start site region 3741
Tssr105979 11 116657513 to 116657536 23 + TSS region transcription start site region 105979
Cpgi4192 11 116657915 to 116658097 182 CpG island CpG island 4192
Cpgi4193 11 116671204 to 116672396 1192 CpG island CpG island 4193
Tssr111961 11 116671554 to 116671573 19 - TSS region transcription start site region 111961
Tssr105980 11 116671658 to 116671694 36 + TSS region transcription start site region 105980
1810032O08Rik 11 116671660 to 116675798 4138 + protein coding gene RIKEN cDNA 1810032O08 gene
Snord1c 11 116672506 to 116672581 75 + snoRNA gene small nucleolar RNA, C/D box 1C
Snord1b 11 116674148 to 116674222 74 + snoRNA gene small nucleolar RNA, C/D box 1B
Snord1a 11 116674598 to 116674671 73 + snoRNA gene small nucleolar RNA, C/D box 1A
St6galnac2 11 116676703 to 116695234 18531 - protein coding gene ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 2
Tssr111962 11 116677442 to 116677448 6 - TSS region transcription start site region 111962
Tssr105981 11 116678254 to 116678255 1 + TSS region transcription start site region 105981
Tssr111963 11 116679185 to 116679191 6 - TSS region transcription start site region 111963
Tssr111964 11 116679193 to 116679203 10 - TSS region transcription start site region 111964
Tssr111965 11 116679221 to 116679226 5 - TSS region transcription start site region 111965
Tssr111966 11 116679982 to 116679999 17 - TSS region transcription start site region 111966
Tssr111967 11 116680056 to 116680068 12 - TSS region transcription start site region 111967
Tssr111968 11 116680075 to 116680086 11 - TSS region transcription start site region 111968
Tssr105982 11 116680278 to 116680293 15 + TSS region transcription start site region 105982
Tssr111969 11 116680596 to 116680601 5 - TSS region transcription start site region 111969
Tssr111970 11 116680704 to 116680713 9 - TSS region transcription start site region 111970
Tssr111971 11 116680874 to 116680914 40 - TSS region transcription start site region 111971
Cpgi4194 11 116694121 to 116695026 905 CpG island CpG island 4194
Tssr111972 11 116694555 to 116694560 5 - TSS region transcription start site region 111972
Tssr111973 11 116694580 to 116694668 88 - TSS region transcription start site region 111973
Tssr111974 11 116694779 to 116694800 21 - TSS region transcription start site region 111974
Tssr111975 11 116694802 to 116694882 80 - TSS region transcription start site region 111975
Tssr111976 11 116695229 to 116695242 13 - TSS region transcription start site region 111976
Tssr111977 11 116705160 to 116705175 15 - TSS region transcription start site region 111977
Tssr111978 11 116725195 to 116725202 7 - TSS region transcription start site region 111978
Tssr105983 11 116725433 to 116725437 4 + TSS region transcription start site region 105983