Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:116105245-116245261

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78 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Trim47 11 116105750 to 116110235 4485 - protein coding gene tripartite motif-containing 47
Cpgi4162 11 116106158 to 116106535 377 CpG island CpG island 4162
Cpgi4163 11 116107900 to 116108361 461 CpG island CpG island 4163
Cpgi4164 11 116108842 to 116109136 294 CpG island CpG island 4164
Tssr105946 11 116108918 to 116108928 10 + TSS region transcription start site region 105946
Cpgi4165 11 116109316 to 116110659 1343 CpG island CpG island 4165
Tssr111847 11 116110185 to 116110206 21 - TSS region transcription start site region 111847
Tssr111848 11 116110211 to 116110259 48 - TSS region transcription start site region 111848
Tssr111849 11 116110266 to 116110283 17 - TSS region transcription start site region 111849
Tssr105947 11 116110327 to 116110349 22 + TSS region transcription start site region 105947
Tssr111850 11 116110406 to 116110417 11 - TSS region transcription start site region 111850
Tssr111851 11 116110717 to 116110739 22 - TSS region transcription start site region 111851
Trim65 11 116124708 to 116131260 6552 - protein coding gene tripartite motif-containing 65
Tssr111852 11 116125326 to 116125331 5 - TSS region transcription start site region 111852
Cpgi4166 11 116130259 to 116131225 966 CpG island CpG island 4166
Tssr111853 11 116131001 to 116131041 40 - TSS region transcription start site region 111853
Tssr111854 11 116131053 to 116131062 9 - TSS region transcription start site region 111854
Tssr111855 11 116131073 to 116131100 27 - TSS region transcription start site region 111855
Tssr111856 11 116131110 to 116131131 21 - TSS region transcription start site region 111856
Mrpl38 11 116131817 to 116138868 7051 - protein coding gene mitochondrial ribosomal protein L38
Tssr111857 11 116132520 to 116132540 20 - TSS region transcription start site region 111857
Tssr111858 11 116132573 to 116132584 11 - TSS region transcription start site region 111858
Tssr111859 11 116132877 to 116132912 35 - TSS region transcription start site region 111859
Cpgi4167 11 116138220 to 116139096 876 CpG island CpG island 4167
Tssr111860 11 116138775 to 116138788 13 - TSS region transcription start site region 111860
Tssr111861 11 116138789 to 116138848 59 - TSS region transcription start site region 111861
Tssr111862 11 116138850 to 116138859 9 - TSS region transcription start site region 111862
Tssr111863 11 116138862 to 116138873 11 - TSS region transcription start site region 111863
Fbf1 11 116142285 to 116168166 25881 - protein coding gene Fas (TNFRSF6) binding factor 1
Cpgi4168 11 116146476 to 116146670 194 CpG island CpG island 4168
Cpgi4169 11 116148939 to 116149201 262 CpG island CpG island 4169
Gm26413 11 116163910 to 116164035 125 - snoRNA gene predicted gene, 26413
Cpgi4170 11 116167710 to 116168507 797 CpG island CpG island 4170
Tssr111864 11 116168138 to 116168205 67 - TSS region transcription start site region 111864
Tssr111865 11 116168295 to 116168306 11 - TSS region transcription start site region 111865
Acox1 11 116171888 to 116199045 27157 - protein coding gene acyl-Coenzyme A oxidase 1, palmitoyl
Tssr111866 11 116173085 to 116173103 18 - TSS region transcription start site region 111866
Tssr111867 11 116173130 to 116173169 39 - TSS region transcription start site region 111867
Tssr111868 11 116173232 to 116173258 26 - TSS region transcription start site region 111868
Tssr111869 11 116173276 to 116173351 75 - TSS region transcription start site region 111869
Tssr111870 11 116174424 to 116174445 21 - TSS region transcription start site region 111870
Tssr111871 11 116174472 to 116174486 14 - TSS region transcription start site region 111871
Tssr111872 11 116174703 to 116174721 18 - TSS region transcription start site region 111872
Tssr111873 11 116174731 to 116174794 63 - TSS region transcription start site region 111873
Tssr111874 11 116174817 to 116174821 4 - TSS region transcription start site region 111874
Tssr111875 11 116174854 to 116174867 13 - TSS region transcription start site region 111875
Tssr111876 11 116175159 to 116175169 10 - TSS region transcription start site region 111876
Tssr111877 11 116175188 to 116175195 7 - TSS region transcription start site region 111877
Tssr111878 11 116175245 to 116175261 16 - TSS region transcription start site region 111878
Tssr111879 11 116178169 to 116178181 12 - TSS region transcription start site region 111879
Tssr111880 11 116178275 to 116178306 31 - TSS region transcription start site region 111880
D11Dcr39 11 116186707 to 116186808 101 DNA segment DNA Segment, Chr 11, Derry C. Roopenian 39
Tssr111881 11 116186895 to 116186899 4 - TSS region transcription start site region 111881
Tssr105948 11 116189414 to 116189460 46 + TSS region transcription start site region 105948
Tssr111882 11 116189542 to 116189550 8 - TSS region transcription start site region 111882
Tssr111883 11 116193538 to 116193561 23 - TSS region transcription start site region 111883
Tssr111884 11 116197987 to 116197997 10 - TSS region transcription start site region 111884
Tssr111885 11 116198254 to 116198269 15 - TSS region transcription start site region 111885
Tssr111886 11 116198332 to 116198347 15 - TSS region transcription start site region 111886
Cpgi4171 11 116198400 to 116199404 1004 CpG island CpG island 4171
Tssr111887 11 116198659 to 116198663 4 - TSS region transcription start site region 111887
Tssr111888 11 116198673 to 116198677 4 - TSS region transcription start site region 111888
Tssr111889 11 116198701 to 116198836 135 - TSS region transcription start site region 111889
Tssr105949 11 116198853 to 116198903 50 + TSS region transcription start site region 105949
Ten1 11 116198855 to 116215318 16463 + protein coding gene TEN1 telomerase capping complex subunit
Tssr111890 11 116199006 to 116199037 31 - TSS region transcription start site region 111890
Tssr111891 11 116199040 to 116199090 50 - TSS region transcription start site region 111891
Tssr111892 11 116206477 to 116206484 7 - TSS region transcription start site region 111892
Tssr105950 11 116210963 to 116211006 43 + TSS region transcription start site region 105950
Cdk3 11 116216003 to 116220287 4284 + polymorphic pseudogene cyclin-dependent kinase 3
Evpl 11 116220559 to 116238077 17518 - protein coding gene envoplakin
Cpgi4172 11 116221819 to 116223150 1331 CpG island CpG island 4172
Gm33250 11 116225260 to 116239239 13979 + lncRNA gene predicted gene, 33250
Cpgi4173 11 116232652 to 116232999 347 CpG island CpG island 4173
Tssr105951 11 116232711 to 116232728 17 + TSS region transcription start site region 105951
Cpgi4174 11 116237861 to 116238373 512 CpG island CpG island 4174
Tssr111893 11 116238083 to 116238097 14 - TSS region transcription start site region 111893
Srp68 11 116245166 to 116274217 29051 - protein coding gene signal recognition particle 68