Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:115978573-116186995

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122 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Itgb4 11 115974725 to 116008412 33687 + protein coding gene integrin beta 4
Tssr105934 11 115982713 to 115982727 14 + TSS region transcription start site region 105934
Tssr105935 11 115982831 to 115982849 18 + TSS region transcription start site region 105935
B230344G16Rik 11 115988184 to 115990668 2484 - lincRNA gene RIKEN cDNA B230344G16 gene
Cpgi4154 11 115988599 to 115989039 440 CpG island CpG island 4154
Cpgi4155 11 115989410 to 115989939 529 CpG island CpG island 4155
Tssr105936 11 115992941 to 115992990 49 + TSS region transcription start site region 105936
Tssr105937 11 115993009 to 115993021 12 + TSS region transcription start site region 105937
Tssr105938 11 115993062 to 115993072 10 + TSS region transcription start site region 105938
Tssr105939 11 115993103 to 115993112 9 + TSS region transcription start site region 105939
Cpgi4156 11 116004702 to 116005707 1005 CpG island CpG island 4156
Tssr105940 11 116006523 to 116006542 19 + TSS region transcription start site region 105940
Tssr105941 11 116006549 to 116006564 15 + TSS region transcription start site region 105941
Galk1 11 116008457 to 116012719 4262 - protein coding gene galactokinase 1
Cpgi4157 11 116012245 to 116013069 824 CpG island CpG island 4157
Tssr111809 11 116012678 to 116012711 33 - TSS region transcription start site region 111809
Tssr111810 11 116012713 to 116012724 11 - TSS region transcription start site region 111810
Tssr111811 11 116020559 to 116020563 4 - TSS region transcription start site region 111811
Tssr3735 11 116021247 to 116021251 4 - TSS region transcription start site region 3735
H3f3b 11 116021961 to 116025450 3489 - protein coding gene H3 histone, family 3B
Tssr111812 11 116022648 to 116022677 29 - TSS region transcription start site region 111812
Tssr111813 11 116022836 to 116022850 14 - TSS region transcription start site region 111813
Cpgi4158 11 116023584 to 116024761 1177 CpG island CpG island 4158
Tssr111814 11 116023964 to 116023977 13 - TSS region transcription start site region 111814
Tssr3736 11 116024058 to 116024082 24 - TSS region transcription start site region 3736
Tssr111815 11 116024085 to 116024114 29 - TSS region transcription start site region 111815
Tssr111816 11 116024489 to 116024511 22 - TSS region transcription start site region 111816
Tssr111817 11 116027391 to 116027401 10 - TSS region transcription start site region 111817
Tssr111818 11 116027849 to 116027858 9 - TSS region transcription start site region 111818
Tssr111819 11 116027934 to 116027945 11 - TSS region transcription start site region 111819
Tssr111820 11 116027961 to 116027978 17 - TSS region transcription start site region 111820
Cpgi4159 11 116029936 to 116031097 1161 CpG island CpG island 4159
Tssr111821 11 116030082 to 116030121 39 - TSS region transcription start site region 111821
Tssr105942 11 116030304 to 116030385 81 + TSS region transcription start site region 105942
Unk 11 116030322 to 116061214 30892 + protein coding gene unkempt family zinc finger
Tssr105943 11 116030665 to 116030698 33 + TSS region transcription start site region 105943
D11Wsu173e 11 116036591 to 116036816 225 DNA segment DNA segment, Chr 11, Wayne State University 173, expressed
Gm38482 11 116039988 to 116041400 1412 + lncRNA gene predicted gene, 38482
Unc13d 11 116062095 to 116077961 15866 - protein coding gene unc-13 homolog D
Tssr111822 11 116076986 to 116077027 41 - TSS region transcription start site region 111822
Tssr111823 11 116077047 to 116077068 21 - TSS region transcription start site region 111823
Tssr111824 11 116077470 to 116077511 41 - TSS region transcription start site region 111824
Tssr111825 11 116077517 to 116077534 17 - TSS region transcription start site region 111825
Tssr111826 11 116077562 to 116077596 34 - TSS region transcription start site region 111826
Tssr111827 11 116077606 to 116077632 26 - TSS region transcription start site region 111827
Tssr111828 11 116077756 to 116077797 41 - TSS region transcription start site region 111828
Tssr111829 11 116077927 to 116077952 25 - TSS region transcription start site region 111829
Tssr111830 11 116077954 to 116077979 25 - TSS region transcription start site region 111830
Cpgi4160 11 116078309 to 116078523 214 CpG island CpG island 4160
Tssr111831 11 116078426 to 116078464 38 - TSS region transcription start site region 111831
Wbp2 11 116078573 to 116086995 8422 - protein coding gene WW domain binding protein 2
Tssr111832 11 116079146 to 116079157 11 - TSS region transcription start site region 111832
Tssr111833 11 116079233 to 116079244 11 - TSS region transcription start site region 111833
Tssr111834 11 116079249 to 116079292 43 - TSS region transcription start site region 111834
Tssr111835 11 116079321 to 116079335 14 - TSS region transcription start site region 111835
Tssr111836 11 116079354 to 116079383 29 - TSS region transcription start site region 111836
Tssr111837 11 116079439 to 116079467 28 - TSS region transcription start site region 111837
Tssr111838 11 116079554 to 116079602 48 - TSS region transcription start site region 111838
Tssr111839 11 116079766 to 116079785 19 - TSS region transcription start site region 111839
Tssr111840 11 116079788 to 116079799 11 - TSS region transcription start site region 111840
Tssr111841 11 116080263 to 116080274 11 - TSS region transcription start site region 111841
Tssr111842 11 116080280 to 116080316 36 - TSS region transcription start site region 111842
Tssr111843 11 116080341 to 116080353 12 - TSS region transcription start site region 111843
Tssr105944 11 116080606 to 116080621 15 + TSS region transcription start site region 105944
Tssr111844 11 116080616 to 116080628 12 - TSS region transcription start site region 111844
Tssr111845 11 116080663 to 116080675 12 - TSS region transcription start site region 111845
Cpgi4161 11 116086792 to 116087772 980 CpG island CpG island 4161
Tssr111846 11 116086929 to 116086979 50 - TSS region transcription start site region 111846
Tssr105945 11 116092196 to 116092200 4 + TSS region transcription start site region 105945
Trim47 11 116105750 to 116110235 4485 - protein coding gene tripartite motif-containing 47
Cpgi4162 11 116106158 to 116106535 377 CpG island CpG island 4162
Cpgi4163 11 116107900 to 116108361 461 CpG island CpG island 4163
Cpgi4164 11 116108842 to 116109136 294 CpG island CpG island 4164
Tssr105946 11 116108918 to 116108928 10 + TSS region transcription start site region 105946
Cpgi4165 11 116109316 to 116110659 1343 CpG island CpG island 4165
Tssr111847 11 116110185 to 116110206 21 - TSS region transcription start site region 111847
Tssr111848 11 116110211 to 116110259 48 - TSS region transcription start site region 111848
Tssr111849 11 116110266 to 116110283 17 - TSS region transcription start site region 111849
Tssr105947 11 116110327 to 116110349 22 + TSS region transcription start site region 105947
Tssr111850 11 116110406 to 116110417 11 - TSS region transcription start site region 111850
Tssr111851 11 116110717 to 116110739 22 - TSS region transcription start site region 111851
Trim65 11 116124708 to 116131260 6552 - protein coding gene tripartite motif-containing 65
Tssr111852 11 116125326 to 116125331 5 - TSS region transcription start site region 111852
Cpgi4166 11 116130259 to 116131225 966 CpG island CpG island 4166
Tssr111853 11 116131001 to 116131041 40 - TSS region transcription start site region 111853
Tssr111854 11 116131053 to 116131062 9 - TSS region transcription start site region 111854
Tssr111855 11 116131073 to 116131100 27 - TSS region transcription start site region 111855
Tssr111856 11 116131110 to 116131131 21 - TSS region transcription start site region 111856
Mrpl38 11 116131817 to 116138868 7051 - protein coding gene mitochondrial ribosomal protein L38
Tssr111857 11 116132520 to 116132540 20 - TSS region transcription start site region 111857
Tssr111858 11 116132573 to 116132584 11 - TSS region transcription start site region 111858
Tssr111859 11 116132877 to 116132912 35 - TSS region transcription start site region 111859
Cpgi4167 11 116138220 to 116139096 876 CpG island CpG island 4167
Tssr111860 11 116138775 to 116138788 13 - TSS region transcription start site region 111860
Tssr111861 11 116138789 to 116138848 59 - TSS region transcription start site region 111861
Tssr111862 11 116138850 to 116138859 9 - TSS region transcription start site region 111862
Tssr111863 11 116138862 to 116138873 11 - TSS region transcription start site region 111863
Fbf1 11 116142285 to 116168166 25881 - protein coding gene Fas (TNFRSF6) binding factor 1
Cpgi4168 11 116146476 to 116146670 194 CpG island CpG island 4168
Cpgi4169 11 116148939 to 116149201 262 CpG island CpG island 4169
Gm26413 11 116163910 to 116164035 125 - snoRNA gene predicted gene, 26413
Cpgi4170 11 116167710 to 116168507 797 CpG island CpG island 4170
Tssr111864 11 116168138 to 116168205 67 - TSS region transcription start site region 111864
Tssr111865 11 116168295 to 116168306 11 - TSS region transcription start site region 111865
Acox1 11 116171888 to 116199045 27157 - protein coding gene acyl-Coenzyme A oxidase 1, palmitoyl
Tssr111866 11 116173085 to 116173103 18 - TSS region transcription start site region 111866
Tssr111867 11 116173130 to 116173169 39 - TSS region transcription start site region 111867
Tssr111868 11 116173232 to 116173258 26 - TSS region transcription start site region 111868
Tssr111869 11 116173276 to 116173351 75 - TSS region transcription start site region 111869
Tssr111870 11 116174424 to 116174445 21 - TSS region transcription start site region 111870
Tssr111871 11 116174472 to 116174486 14 - TSS region transcription start site region 111871
Tssr111872 11 116174703 to 116174721 18 - TSS region transcription start site region 111872
Tssr111873 11 116174731 to 116174794 63 - TSS region transcription start site region 111873
Tssr111874 11 116174817 to 116174821 4 - TSS region transcription start site region 111874
Tssr111875 11 116174854 to 116174867 13 - TSS region transcription start site region 111875
Tssr111876 11 116175159 to 116175169 10 - TSS region transcription start site region 111876
Tssr111877 11 116175188 to 116175195 7 - TSS region transcription start site region 111877
Tssr111878 11 116175245 to 116175261 16 - TSS region transcription start site region 111878
Tssr111879 11 116178169 to 116178181 12 - TSS region transcription start site region 111879
Tssr111880 11 116178275 to 116178306 31 - TSS region transcription start site region 111880
D11Dcr39 11 116186707 to 116186808 101 DNA segment DNA Segment, Chr 11, Derry C. Roopenian 39
Tssr111881 11 116186895 to 116186899 4 - TSS region transcription start site region 111881