Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:115939559-116009577

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29 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sap30bp 11 115933578 to 115965534 31956 + protein coding gene SAP30 binding protein
Gm39474 11 115939872 to 115942275 2403 - lncRNA gene predicted gene, 39474
Sap30bpos 11 115946450 to 115952105 5655 - antisense lncRNA gene SAP30 binding protein, opposite strand
Tssr105923 11 115971232 to 115971276 44 + TSS region transcription start site region 105923
Tssr105924 11 115974550 to 115974555 5 + TSS region transcription start site region 105924
Cpgi4153 11 115974556 to 115975589 1033 CpG island CpG island 4153
Tssr105925 11 115974559 to 115974577 18 + TSS region transcription start site region 105925
Itgb4 11 115974725 to 116008412 33687 + protein coding gene integrin beta 4
Tssr105926 11 115974740 to 115974752 12 + TSS region transcription start site region 105926
Tssr105927 11 115974778 to 115974781 3 + TSS region transcription start site region 105927
Tssr105928 11 115974869 to 115974876 7 + TSS region transcription start site region 105928
Tssr105929 11 115974907 to 115974917 10 + TSS region transcription start site region 105929
Tssr105930 11 115974930 to 115974982 52 + TSS region transcription start site region 105930
Tssr105931 11 115974983 to 115975051 68 + TSS region transcription start site region 105931
Tssr105932 11 115975064 to 115975088 24 + TSS region transcription start site region 105932
Tssr105933 11 115975110 to 115975113 3 + TSS region transcription start site region 105933
Tssr105934 11 115982713 to 115982727 14 + TSS region transcription start site region 105934
Tssr105935 11 115982831 to 115982849 18 + TSS region transcription start site region 105935
B230344G16Rik 11 115988184 to 115990668 2484 - lincRNA gene RIKEN cDNA B230344G16 gene
Cpgi4154 11 115988599 to 115989039 440 CpG island CpG island 4154
Cpgi4155 11 115989410 to 115989939 529 CpG island CpG island 4155
Tssr105936 11 115992941 to 115992990 49 + TSS region transcription start site region 105936
Tssr105937 11 115993009 to 115993021 12 + TSS region transcription start site region 105937
Tssr105938 11 115993062 to 115993072 10 + TSS region transcription start site region 105938
Tssr105939 11 115993103 to 115993112 9 + TSS region transcription start site region 105939
Cpgi4156 11 116004702 to 116005707 1005 CpG island CpG island 4156
Tssr105940 11 116006523 to 116006542 19 + TSS region transcription start site region 105940
Tssr105941 11 116006549 to 116006564 15 + TSS region transcription start site region 105941
Galk1 11 116008457 to 116012719 4262 - protein coding gene galactokinase 1