Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:115904559-116044577

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64 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Recql5 11 115892595 to 115933477 40882 - protein coding gene RecQ protein-like 5
Smim5 11 115899966 to 115906269 6303 + protein coding gene small integral membrane protein 5
Tssr105918 11 115912001 to 115912025 24 + TSS region transcription start site region 105918
Smim6 11 115912017 to 115913917 1900 + protein coding gene small integral membrane protein 6
Tssr105919 11 115912063 to 115912076 13 + TSS region transcription start site region 105919
Tssr105920 11 115912280 to 115912303 23 + TSS region transcription start site region 105920
Tssr105921 11 115912315 to 115912335 20 + TSS region transcription start site region 105921
Recql5os1 11 115925027 to 115926143 1116 + antisense lncRNA gene RecQ-like 5, opposite strand 1
Cpgi4152 11 115933428 to 115934052 624 CpG island CpG island 4152
Tssr111808 11 115933464 to 115933498 34 - TSS region transcription start site region 111808
Sap30bp 11 115933578 to 115965534 31956 + protein coding gene SAP30 binding protein
Tssr105922 11 115933629 to 115933669 40 + TSS region transcription start site region 105922
Gm39474 11 115939872 to 115942275 2403 - lncRNA gene predicted gene, 39474
Sap30bpos 11 115946450 to 115952105 5655 - antisense lncRNA gene SAP30 binding protein, opposite strand
Tssr105923 11 115971232 to 115971276 44 + TSS region transcription start site region 105923
Tssr105924 11 115974550 to 115974555 5 + TSS region transcription start site region 105924
Cpgi4153 11 115974556 to 115975589 1033 CpG island CpG island 4153
Tssr105925 11 115974559 to 115974577 18 + TSS region transcription start site region 105925
Itgb4 11 115974725 to 116008412 33687 + protein coding gene integrin beta 4
Tssr105926 11 115974740 to 115974752 12 + TSS region transcription start site region 105926
Tssr105927 11 115974778 to 115974781 3 + TSS region transcription start site region 105927
Tssr105928 11 115974869 to 115974876 7 + TSS region transcription start site region 105928
Tssr105929 11 115974907 to 115974917 10 + TSS region transcription start site region 105929
Tssr105930 11 115974930 to 115974982 52 + TSS region transcription start site region 105930
Tssr105931 11 115974983 to 115975051 68 + TSS region transcription start site region 105931
Tssr105932 11 115975064 to 115975088 24 + TSS region transcription start site region 105932
Tssr105933 11 115975110 to 115975113 3 + TSS region transcription start site region 105933
Tssr105934 11 115982713 to 115982727 14 + TSS region transcription start site region 105934
Tssr105935 11 115982831 to 115982849 18 + TSS region transcription start site region 105935
B230344G16Rik 11 115988184 to 115990668 2484 - lincRNA gene RIKEN cDNA B230344G16 gene
Cpgi4154 11 115988599 to 115989039 440 CpG island CpG island 4154
Cpgi4155 11 115989410 to 115989939 529 CpG island CpG island 4155
Tssr105936 11 115992941 to 115992990 49 + TSS region transcription start site region 105936
Tssr105937 11 115993009 to 115993021 12 + TSS region transcription start site region 105937
Tssr105938 11 115993062 to 115993072 10 + TSS region transcription start site region 105938
Tssr105939 11 115993103 to 115993112 9 + TSS region transcription start site region 105939
Cpgi4156 11 116004702 to 116005707 1005 CpG island CpG island 4156
Tssr105940 11 116006523 to 116006542 19 + TSS region transcription start site region 105940
Tssr105941 11 116006549 to 116006564 15 + TSS region transcription start site region 105941
Galk1 11 116008457 to 116012719 4262 - protein coding gene galactokinase 1
Cpgi4157 11 116012245 to 116013069 824 CpG island CpG island 4157
Tssr111809 11 116012678 to 116012711 33 - TSS region transcription start site region 111809
Tssr111810 11 116012713 to 116012724 11 - TSS region transcription start site region 111810
Tssr111811 11 116020559 to 116020563 4 - TSS region transcription start site region 111811
Tssr3735 11 116021247 to 116021251 4 - TSS region transcription start site region 3735
H3f3b 11 116021961 to 116025450 3489 - protein coding gene H3 histone, family 3B
Tssr111812 11 116022648 to 116022677 29 - TSS region transcription start site region 111812
Tssr111813 11 116022836 to 116022850 14 - TSS region transcription start site region 111813
Cpgi4158 11 116023584 to 116024761 1177 CpG island CpG island 4158
Tssr111814 11 116023964 to 116023977 13 - TSS region transcription start site region 111814
Tssr3736 11 116024058 to 116024082 24 - TSS region transcription start site region 3736
Tssr111815 11 116024085 to 116024114 29 - TSS region transcription start site region 111815
Tssr111816 11 116024489 to 116024511 22 - TSS region transcription start site region 111816
Tssr111817 11 116027391 to 116027401 10 - TSS region transcription start site region 111817
Tssr111818 11 116027849 to 116027858 9 - TSS region transcription start site region 111818
Tssr111819 11 116027934 to 116027945 11 - TSS region transcription start site region 111819
Tssr111820 11 116027961 to 116027978 17 - TSS region transcription start site region 111820
Cpgi4159 11 116029936 to 116031097 1161 CpG island CpG island 4159
Tssr111821 11 116030082 to 116030121 39 - TSS region transcription start site region 111821
Tssr105942 11 116030304 to 116030385 81 + TSS region transcription start site region 105942
Unk 11 116030322 to 116061214 30892 + protein coding gene unkempt family zinc finger
Tssr105943 11 116030665 to 116030698 33 + TSS region transcription start site region 105943
D11Wsu173e 11 116036591 to 116036816 225 DNA segment DNA segment, Chr 11, Wayne State University 173, expressed
Gm38482 11 116039988 to 116041400 1412 + lncRNA gene predicted gene, 38482