Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:115894872-115987275

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33 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Recql5 11 115892595 to 115933477 40882 - protein coding gene RecQ protein-like 5
Tssr105914 11 115899844 to 115899879 35 + TSS region transcription start site region 105914
Tssr105915 11 115899943 to 115899954 11 + TSS region transcription start site region 105915
Smim5 11 115899966 to 115906269 6303 + protein coding gene small integral membrane protein 5
Tssr105916 11 115899985 to 115899999 14 + TSS region transcription start site region 105916
Tssr105917 11 115900125 to 115900190 65 + TSS region transcription start site region 105917
Tssr105918 11 115912001 to 115912025 24 + TSS region transcription start site region 105918
Smim6 11 115912017 to 115913917 1900 + protein coding gene small integral membrane protein 6
Tssr105919 11 115912063 to 115912076 13 + TSS region transcription start site region 105919
Tssr105920 11 115912280 to 115912303 23 + TSS region transcription start site region 105920
Tssr105921 11 115912315 to 115912335 20 + TSS region transcription start site region 105921
Recql5os1 11 115925027 to 115926143 1116 + antisense lncRNA gene RecQ-like 5, opposite strand 1
Cpgi4152 11 115933428 to 115934052 624 CpG island CpG island 4152
Tssr111808 11 115933464 to 115933498 34 - TSS region transcription start site region 111808
Sap30bp 11 115933578 to 115965534 31956 + protein coding gene SAP30 binding protein
Tssr105922 11 115933629 to 115933669 40 + TSS region transcription start site region 105922
Gm39474 11 115939872 to 115942275 2403 - lncRNA gene predicted gene, 39474
Sap30bpos 11 115946450 to 115952105 5655 - antisense lncRNA gene SAP30 binding protein, opposite strand
Tssr105923 11 115971232 to 115971276 44 + TSS region transcription start site region 105923
Tssr105924 11 115974550 to 115974555 5 + TSS region transcription start site region 105924
Cpgi4153 11 115974556 to 115975589 1033 CpG island CpG island 4153
Tssr105925 11 115974559 to 115974577 18 + TSS region transcription start site region 105925
Itgb4 11 115974725 to 116008412 33687 + protein coding gene integrin beta 4
Tssr105926 11 115974740 to 115974752 12 + TSS region transcription start site region 105926
Tssr105927 11 115974778 to 115974781 3 + TSS region transcription start site region 105927
Tssr105928 11 115974869 to 115974876 7 + TSS region transcription start site region 105928
Tssr105929 11 115974907 to 115974917 10 + TSS region transcription start site region 105929
Tssr105930 11 115974930 to 115974982 52 + TSS region transcription start site region 105930
Tssr105931 11 115974983 to 115975051 68 + TSS region transcription start site region 105931
Tssr105932 11 115975064 to 115975088 24 + TSS region transcription start site region 105932
Tssr105933 11 115975110 to 115975113 3 + TSS region transcription start site region 105933
Tssr105934 11 115982713 to 115982727 14 + TSS region transcription start site region 105934
Tssr105935 11 115982831 to 115982849 18 + TSS region transcription start site region 105935