Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:115802315-116022335

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77 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Caskin2 11 115799183 to 115813639 14456 - protein coding gene CASK-interacting protein 2
Tssr111800 11 115808068 to 115808106 38 - TSS region transcription start site region 111800
Tssr111801 11 115812136 to 115812230 94 - TSS region transcription start site region 111801
Cpgi4148 11 115813228 to 115815560 2332 CpG island CpG island 4148
Tssr111802 11 115813563 to 115813593 30 - TSS region transcription start site region 111802
Tssr111803 11 115813604 to 115813609 5 - TSS region transcription start site region 111803
Tssr111804 11 115813621 to 115813654 33 - TSS region transcription start site region 111804
Tssr105905 11 115814276 to 115814279 3 + TSS region transcription start site region 105905
Tsen54 11 115814724 to 115823094 8370 + protein coding gene tRNA splicing endonuclease subunit 54
Tssr105906 11 115814732 to 115814778 46 + TSS region transcription start site region 105906
Cpgi4149 11 115823624 to 115824776 1152 CpG island CpG island 4149
Tssr105907 11 115824029 to 115824097 68 + TSS region transcription start site region 105907
Llgl2 11 115824049 to 115855780 31731 + protein coding gene LLGL2 scribble cell polarity complex component
Tssr105908 11 115832804 to 115832820 16 + TSS region transcription start site region 105908
Tssr105909 11 115834338 to 115834349 11 + TSS region transcription start site region 105909
Tssr111805 11 115843981 to 115843986 5 - TSS region transcription start site region 111805
D11Jpk4 11 115846700 to 115846851 151 DNA segment DNA segment, Chr 11, Japan, Kominami 4
Cpgi4150 11 115858123 to 115860329 2206 CpG island CpG island 4150
Myo15b 11 115858406 to 115892603 34197 + protein coding gene myosin XVB
Tssr111806 11 115871325 to 115871326 1 - TSS region transcription start site region 111806
Tssr105910 11 115877497 to 115877548 51 + TSS region transcription start site region 105910
D11Dcr38 11 115879431 to 115879526 95 DNA segment DNA Segment, Chr 11, Derry C. Roopenian 38
Tssr105911 11 115882890 to 115882901 11 + TSS region transcription start site region 105911
Tssr105912 11 115882931 to 115882957 26 + TSS region transcription start site region 105912
Cpgi4151 11 115883506 to 115883830 324 CpG island CpG island 4151
Tssr111807 11 115885231 to 115885236 5 - TSS region transcription start site region 111807
Tssr105913 11 115887610 to 115887651 41 + TSS region transcription start site region 105913
Recql5 11 115892595 to 115933477 40882 - protein coding gene RecQ protein-like 5
Tssr105914 11 115899844 to 115899879 35 + TSS region transcription start site region 105914
Tssr105915 11 115899943 to 115899954 11 + TSS region transcription start site region 105915
Smim5 11 115899966 to 115906269 6303 + protein coding gene small integral membrane protein 5
Tssr105916 11 115899985 to 115899999 14 + TSS region transcription start site region 105916
Tssr105917 11 115900125 to 115900190 65 + TSS region transcription start site region 105917
Tssr105918 11 115912001 to 115912025 24 + TSS region transcription start site region 105918
Smim6 11 115912017 to 115913917 1900 + protein coding gene small integral membrane protein 6
Tssr105919 11 115912063 to 115912076 13 + TSS region transcription start site region 105919
Tssr105920 11 115912280 to 115912303 23 + TSS region transcription start site region 105920
Tssr105921 11 115912315 to 115912335 20 + TSS region transcription start site region 105921
Recql5os1 11 115925027 to 115926143 1116 + antisense lncRNA gene RecQ-like 5, opposite strand 1
Cpgi4152 11 115933428 to 115934052 624 CpG island CpG island 4152
Tssr111808 11 115933464 to 115933498 34 - TSS region transcription start site region 111808
Sap30bp 11 115933578 to 115965534 31956 + protein coding gene SAP30 binding protein
Tssr105922 11 115933629 to 115933669 40 + TSS region transcription start site region 105922
Gm39474 11 115939872 to 115942275 2403 - lncRNA gene predicted gene, 39474
Sap30bpos 11 115946450 to 115952105 5655 - antisense lncRNA gene SAP30 binding protein, opposite strand
Tssr105923 11 115971232 to 115971276 44 + TSS region transcription start site region 105923
Tssr105924 11 115974550 to 115974555 5 + TSS region transcription start site region 105924
Cpgi4153 11 115974556 to 115975589 1033 CpG island CpG island 4153
Tssr105925 11 115974559 to 115974577 18 + TSS region transcription start site region 105925
Itgb4 11 115974725 to 116008412 33687 + protein coding gene integrin beta 4
Tssr105926 11 115974740 to 115974752 12 + TSS region transcription start site region 105926
Tssr105927 11 115974778 to 115974781 3 + TSS region transcription start site region 105927
Tssr105928 11 115974869 to 115974876 7 + TSS region transcription start site region 105928
Tssr105929 11 115974907 to 115974917 10 + TSS region transcription start site region 105929
Tssr105930 11 115974930 to 115974982 52 + TSS region transcription start site region 105930
Tssr105931 11 115974983 to 115975051 68 + TSS region transcription start site region 105931
Tssr105932 11 115975064 to 115975088 24 + TSS region transcription start site region 105932
Tssr105933 11 115975110 to 115975113 3 + TSS region transcription start site region 105933
Tssr105934 11 115982713 to 115982727 14 + TSS region transcription start site region 105934
Tssr105935 11 115982831 to 115982849 18 + TSS region transcription start site region 105935
B230344G16Rik 11 115988184 to 115990668 2484 - lincRNA gene RIKEN cDNA B230344G16 gene
Cpgi4154 11 115988599 to 115989039 440 CpG island CpG island 4154
Cpgi4155 11 115989410 to 115989939 529 CpG island CpG island 4155
Tssr105936 11 115992941 to 115992990 49 + TSS region transcription start site region 105936
Tssr105937 11 115993009 to 115993021 12 + TSS region transcription start site region 105937
Tssr105938 11 115993062 to 115993072 10 + TSS region transcription start site region 105938
Tssr105939 11 115993103 to 115993112 9 + TSS region transcription start site region 105939
Cpgi4156 11 116004702 to 116005707 1005 CpG island CpG island 4156
Tssr105940 11 116006523 to 116006542 19 + TSS region transcription start site region 105940
Tssr105941 11 116006549 to 116006564 15 + TSS region transcription start site region 105941
Galk1 11 116008457 to 116012719 4262 - protein coding gene galactokinase 1
Cpgi4157 11 116012245 to 116013069 824 CpG island CpG island 4157
Tssr111809 11 116012678 to 116012711 33 - TSS region transcription start site region 111809
Tssr111810 11 116012713 to 116012724 11 - TSS region transcription start site region 111810
Tssr111811 11 116020559 to 116020563 4 - TSS region transcription start site region 111811
Tssr3735 11 116021247 to 116021251 4 - TSS region transcription start site region 3735
H3f3b 11 116021961 to 116025450 3489 - protein coding gene H3 histone, family 3B