Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:115538406-116212603

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271 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi4141 11 115563942 to 115564768 826 CpG island CpG island 4141
Tssr111771 11 115564117 to 115564130 13 - TSS region transcription start site region 111771
Nup85 11 115564436 to 115583924 19488 + protein coding gene nucleoporin 85
Tssr105884 11 115564437 to 115564490 53 + TSS region transcription start site region 105884
Tssr105885 11 115581765 to 115581776 11 + TSS region transcription start site region 105885
Gga3 11 115584255 to 115603925 19670 - protein coding gene golgi associated, gamma adaptin ear containing, ARF binding protein 3
Tssr111772 11 115590659 to 115590675 16 - TSS region transcription start site region 111772
Tssr111773 11 115590854 to 115590860 6 - TSS region transcription start site region 111773
Gm25364 11 115601656 to 115601762 106 + snRNA gene predicted gene, 25364
Cpgi4142 11 115603302 to 115604942 1640 CpG island CpG island 4142
Tssr111774 11 115603866 to 115603921 55 - TSS region transcription start site region 111774
Tssr105886 11 115603920 to 115603969 49 + TSS region transcription start site region 105886
Tssr105887 11 115603975 to 115603994 19 + TSS region transcription start site region 105887
Tssr105888 11 115604130 to 115604164 34 + TSS region transcription start site region 105888
Mrps7 11 115604151 to 115607624 3473 + protein coding gene mitchondrial ribosomal protein S7
Tssr105889 11 115604169 to 115604180 11 + TSS region transcription start site region 105889
Mif4gd 11 115607918 to 115612969 5051 - protein coding gene MIF4G domain containing
Obq33 11 115609643 to 115609643 0 QTL obesity QTL 33
Cpgi4143 11 115612001 to 115613272 1271 CpG island CpG island 4143
Tssr111775 11 115612491 to 115612503 12 - TSS region transcription start site region 111775
Tssr111776 11 115612507 to 115612547 40 - TSS region transcription start site region 111776
Tssr105890 11 115612602 to 115612611 9 + TSS region transcription start site region 105890
Tssr111777 11 115612896 to 115612907 11 - TSS region transcription start site region 111777
Tssr111778 11 115612913 to 115612937 24 - TSS region transcription start site region 111778
Tssr111779 11 115612940 to 115612975 35 - TSS region transcription start site region 111779
Tssr105891 11 115613485 to 115613500 15 + TSS region transcription start site region 105891
Slc25a19 11 115614178 to 115628295 14117 - protein coding gene solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19
Gm26613 11 115615462 to 115626707 11245 + lincRNA gene predicted gene, 26613
Tssr111780 11 115627702 to 115627709 7 - TSS region transcription start site region 111780
Cpgi4144 11 115627713 to 115628479 766 CpG island CpG island 4144
Tssr111781 11 115627727 to 115627738 11 - TSS region transcription start site region 111781
Tssr111782 11 115627743 to 115627759 16 - TSS region transcription start site region 111782
Tssr111783 11 115627761 to 115627791 30 - TSS region transcription start site region 111783
Tssr111784 11 115628093 to 115628122 29 - TSS region transcription start site region 111784
Tssr111785 11 115628125 to 115628164 39 - TSS region transcription start site region 111785
Tssr111786 11 115628233 to 115628250 17 - TSS region transcription start site region 111786
Tssr111787 11 115628260 to 115628298 38 - TSS region transcription start site region 111787
Tssr105892 11 115628404 to 115628423 19 + TSS region transcription start site region 105892
Grb2 11 115644045 to 115708597 64552 - protein coding gene growth factor receptor bound protein 2
Tssr111788 11 115645060 to 115645065 5 - TSS region transcription start site region 111788
Tssr111789 11 115645215 to 115645239 24 - TSS region transcription start site region 111789
Gm11702 11 115657491 to 115657559 68 - pseudogene predicted gene 11702
Tssr111790 11 115663806 to 115663810 4 - TSS region transcription start site region 111790
Tssr111791 11 115686178 to 115686194 16 - TSS region transcription start site region 111791
Tssr111792 11 115696575 to 115696600 25 - TSS region transcription start site region 111792
Tssr111793 11 115699257 to 115699268 11 - TSS region transcription start site region 111793
Tssr3733 11 115699278 to 115699281 3 - TSS region transcription start site region 3733
Tssr111794 11 115699313 to 115699324 11 - TSS region transcription start site region 111794
Tssr111795 11 115699331 to 115699404 73 - TSS region transcription start site region 111795
Tssr111796 11 115699427 to 115699438 11 - TSS region transcription start site region 111796
Tssr111797 11 115699461 to 115699514 53 - TSS region transcription start site region 111797
Tssr105893 11 115699593 to 115699642 49 + TSS region transcription start site region 105893
Cpgi4145 11 115707494 to 115709306 1812 CpG island CpG island 4145
Tssr105894 11 115708062 to 115708087 25 + TSS region transcription start site region 105894
Tssr111798 11 115708525 to 115708534 9 - TSS region transcription start site region 111798
Tssr111799 11 115708538 to 115708614 76 - TSS region transcription start site region 111799
Gm42096 11 115722656 to 115726901 4245 - lncRNA gene predicted gene, 42096
Gm11703 11 115724326 to 115724808 482 - pseudogene predicted gene 11703
Gm23699 11 115727143 to 115727277 134 + snoRNA gene predicted gene, 23699
Gm11704 11 115729466 to 115729679 213 + pseudogene predicted gene 11704
Tssr3734 11 115730695 to 115730697 2 + TSS region transcription start site region 3734
Cpgi4146 11 115765203 to 115766202 999 CpG island CpG island 4146
Tssr105895 11 115765420 to 115765466 46 + TSS region transcription start site region 105895
Tmem94 11 115765433 to 115799033 33600 + protein coding gene transmembrane protein 94
Tssr105896 11 115765500 to 115765533 33 + TSS region transcription start site region 105896
Tssr105897 11 115766676 to 115766738 62 + TSS region transcription start site region 105897
Tssr105898 11 115766780 to 115766796 16 + TSS region transcription start site region 105898
Tssr105899 11 115766801 to 115766821 20 + TSS region transcription start site region 105899
Gm46302 11 115773682 to 115777241 3559 - lncRNA gene predicted gene, 46302
Tssr105900 11 115776236 to 115776277 41 + TSS region transcription start site region 105900
Tssr105901 11 115780660 to 115780688 28 + TSS region transcription start site region 105901
Tssr105902 11 115780698 to 115780718 20 + TSS region transcription start site region 105902
Tssr105903 11 115780737 to 115780756 19 + TSS region transcription start site region 105903
Tssr105904 11 115780765 to 115780786 21 + TSS region transcription start site region 105904
Cpgi4147 11 115791851 to 115792121 270 CpG island CpG island 4147
Mir5621 11 115795824 to 115795886 62 + miRNA gene microRNA 5621
Caskin2 11 115799183 to 115813639 14456 - protein coding gene CASK-interacting protein 2
Tssr111800 11 115808068 to 115808106 38 - TSS region transcription start site region 111800
Tssr111801 11 115812136 to 115812230 94 - TSS region transcription start site region 111801
Cpgi4148 11 115813228 to 115815560 2332 CpG island CpG island 4148
Tssr111802 11 115813563 to 115813593 30 - TSS region transcription start site region 111802
Tssr111803 11 115813604 to 115813609 5 - TSS region transcription start site region 111803
Tssr111804 11 115813621 to 115813654 33 - TSS region transcription start site region 111804
Tssr105905 11 115814276 to 115814279 3 + TSS region transcription start site region 105905
Tsen54 11 115814724 to 115823094 8370 + protein coding gene tRNA splicing endonuclease subunit 54
Tssr105906 11 115814732 to 115814778 46 + TSS region transcription start site region 105906
Cpgi4149 11 115823624 to 115824776 1152 CpG island CpG island 4149
Tssr105907 11 115824029 to 115824097 68 + TSS region transcription start site region 105907
Llgl2 11 115824049 to 115855780 31731 + protein coding gene LLGL2 scribble cell polarity complex component
Tssr105908 11 115832804 to 115832820 16 + TSS region transcription start site region 105908
Tssr105909 11 115834338 to 115834349 11 + TSS region transcription start site region 105909
Tssr111805 11 115843981 to 115843986 5 - TSS region transcription start site region 111805
D11Jpk4 11 115846700 to 115846851 151 DNA segment DNA segment, Chr 11, Japan, Kominami 4
Cpgi4150 11 115858123 to 115860329 2206 CpG island CpG island 4150
Myo15b 11 115858406 to 115892603 34197 + protein coding gene myosin XVB
Tssr111806 11 115871325 to 115871326 1 - TSS region transcription start site region 111806
Tssr105910 11 115877497 to 115877548 51 + TSS region transcription start site region 105910
D11Dcr38 11 115879431 to 115879526 95 DNA segment DNA Segment, Chr 11, Derry C. Roopenian 38
Tssr105911 11 115882890 to 115882901 11 + TSS region transcription start site region 105911
Tssr105912 11 115882931 to 115882957 26 + TSS region transcription start site region 105912
Cpgi4151 11 115883506 to 115883830 324 CpG island CpG island 4151
Tssr111807 11 115885231 to 115885236 5 - TSS region transcription start site region 111807
Tssr105913 11 115887610 to 115887651 41 + TSS region transcription start site region 105913
Recql5 11 115892595 to 115933477 40882 - protein coding gene RecQ protein-like 5
Tssr105914 11 115899844 to 115899879 35 + TSS region transcription start site region 105914
Tssr105915 11 115899943 to 115899954 11 + TSS region transcription start site region 105915
Smim5 11 115899966 to 115906269 6303 + protein coding gene small integral membrane protein 5
Tssr105916 11 115899985 to 115899999 14 + TSS region transcription start site region 105916
Tssr105917 11 115900125 to 115900190 65 + TSS region transcription start site region 105917
Tssr105918 11 115912001 to 115912025 24 + TSS region transcription start site region 105918
Smim6 11 115912017 to 115913917 1900 + protein coding gene small integral membrane protein 6
Tssr105919 11 115912063 to 115912076 13 + TSS region transcription start site region 105919
Tssr105920 11 115912280 to 115912303 23 + TSS region transcription start site region 105920
Tssr105921 11 115912315 to 115912335 20 + TSS region transcription start site region 105921
Recql5os1 11 115925027 to 115926143 1116 + antisense lncRNA gene RecQ-like 5, opposite strand 1
Cpgi4152 11 115933428 to 115934052 624 CpG island CpG island 4152
Tssr111808 11 115933464 to 115933498 34 - TSS region transcription start site region 111808
Sap30bp 11 115933578 to 115965534 31956 + protein coding gene SAP30 binding protein
Tssr105922 11 115933629 to 115933669 40 + TSS region transcription start site region 105922
Gm39474 11 115939872 to 115942275 2403 - lncRNA gene predicted gene, 39474
Sap30bpos 11 115946450 to 115952105 5655 - antisense lncRNA gene SAP30 binding protein, opposite strand
Tssr105923 11 115971232 to 115971276 44 + TSS region transcription start site region 105923
Tssr105924 11 115974550 to 115974555 5 + TSS region transcription start site region 105924
Cpgi4153 11 115974556 to 115975589 1033 CpG island CpG island 4153
Tssr105925 11 115974559 to 115974577 18 + TSS region transcription start site region 105925
Itgb4 11 115974725 to 116008412 33687 + protein coding gene integrin beta 4
Tssr105926 11 115974740 to 115974752 12 + TSS region transcription start site region 105926
Tssr105927 11 115974778 to 115974781 3 + TSS region transcription start site region 105927
Tssr105928 11 115974869 to 115974876 7 + TSS region transcription start site region 105928
Tssr105929 11 115974907 to 115974917 10 + TSS region transcription start site region 105929
Tssr105930 11 115974930 to 115974982 52 + TSS region transcription start site region 105930
Tssr105931 11 115974983 to 115975051 68 + TSS region transcription start site region 105931
Tssr105932 11 115975064 to 115975088 24 + TSS region transcription start site region 105932
Tssr105933 11 115975110 to 115975113 3 + TSS region transcription start site region 105933
Tssr105934 11 115982713 to 115982727 14 + TSS region transcription start site region 105934
Tssr105935 11 115982831 to 115982849 18 + TSS region transcription start site region 105935
B230344G16Rik 11 115988184 to 115990668 2484 - lincRNA gene RIKEN cDNA B230344G16 gene
Cpgi4154 11 115988599 to 115989039 440 CpG island CpG island 4154
Cpgi4155 11 115989410 to 115989939 529 CpG island CpG island 4155
Tssr105936 11 115992941 to 115992990 49 + TSS region transcription start site region 105936
Tssr105937 11 115993009 to 115993021 12 + TSS region transcription start site region 105937
Tssr105938 11 115993062 to 115993072 10 + TSS region transcription start site region 105938
Tssr105939 11 115993103 to 115993112 9 + TSS region transcription start site region 105939
Cpgi4156 11 116004702 to 116005707 1005 CpG island CpG island 4156
Tssr105940 11 116006523 to 116006542 19 + TSS region transcription start site region 105940
Tssr105941 11 116006549 to 116006564 15 + TSS region transcription start site region 105941
Galk1 11 116008457 to 116012719 4262 - protein coding gene galactokinase 1
Cpgi4157 11 116012245 to 116013069 824 CpG island CpG island 4157
Tssr111809 11 116012678 to 116012711 33 - TSS region transcription start site region 111809
Tssr111810 11 116012713 to 116012724 11 - TSS region transcription start site region 111810
Tssr111811 11 116020559 to 116020563 4 - TSS region transcription start site region 111811
Tssr3735 11 116021247 to 116021251 4 - TSS region transcription start site region 3735
H3f3b 11 116021961 to 116025450 3489 - protein coding gene H3 histone, family 3B
Tssr111812 11 116022648 to 116022677 29 - TSS region transcription start site region 111812
Tssr111813 11 116022836 to 116022850 14 - TSS region transcription start site region 111813
Cpgi4158 11 116023584 to 116024761 1177 CpG island CpG island 4158
Tssr111814 11 116023964 to 116023977 13 - TSS region transcription start site region 111814
Tssr3736 11 116024058 to 116024082 24 - TSS region transcription start site region 3736
Tssr111815 11 116024085 to 116024114 29 - TSS region transcription start site region 111815
Tssr111816 11 116024489 to 116024511 22 - TSS region transcription start site region 111816
Tssr111817 11 116027391 to 116027401 10 - TSS region transcription start site region 111817
Tssr111818 11 116027849 to 116027858 9 - TSS region transcription start site region 111818
Tssr111819 11 116027934 to 116027945 11 - TSS region transcription start site region 111819
Tssr111820 11 116027961 to 116027978 17 - TSS region transcription start site region 111820
Cpgi4159 11 116029936 to 116031097 1161 CpG island CpG island 4159
Tssr111821 11 116030082 to 116030121 39 - TSS region transcription start site region 111821
Tssr105942 11 116030304 to 116030385 81 + TSS region transcription start site region 105942
Unk 11 116030322 to 116061214 30892 + protein coding gene unkempt family zinc finger
Tssr105943 11 116030665 to 116030698 33 + TSS region transcription start site region 105943
D11Wsu173e 11 116036591 to 116036816 225 DNA segment DNA segment, Chr 11, Wayne State University 173, expressed
Gm38482 11 116039988 to 116041400 1412 + lncRNA gene predicted gene, 38482
Unc13d 11 116062095 to 116077961 15866 - protein coding gene unc-13 homolog D
Tssr111822 11 116076986 to 116077027 41 - TSS region transcription start site region 111822
Tssr111823 11 116077047 to 116077068 21 - TSS region transcription start site region 111823
Tssr111824 11 116077470 to 116077511 41 - TSS region transcription start site region 111824
Tssr111825 11 116077517 to 116077534 17 - TSS region transcription start site region 111825
Tssr111826 11 116077562 to 116077596 34 - TSS region transcription start site region 111826
Tssr111827 11 116077606 to 116077632 26 - TSS region transcription start site region 111827
Tssr111828 11 116077756 to 116077797 41 - TSS region transcription start site region 111828
Tssr111829 11 116077927 to 116077952 25 - TSS region transcription start site region 111829
Tssr111830 11 116077954 to 116077979 25 - TSS region transcription start site region 111830
Cpgi4160 11 116078309 to 116078523 214 CpG island CpG island 4160
Tssr111831 11 116078426 to 116078464 38 - TSS region transcription start site region 111831
Wbp2 11 116078573 to 116086995 8422 - protein coding gene WW domain binding protein 2
Tssr111832 11 116079146 to 116079157 11 - TSS region transcription start site region 111832
Tssr111833 11 116079233 to 116079244 11 - TSS region transcription start site region 111833
Tssr111834 11 116079249 to 116079292 43 - TSS region transcription start site region 111834
Tssr111835 11 116079321 to 116079335 14 - TSS region transcription start site region 111835
Tssr111836 11 116079354 to 116079383 29 - TSS region transcription start site region 111836
Tssr111837 11 116079439 to 116079467 28 - TSS region transcription start site region 111837
Tssr111838 11 116079554 to 116079602 48 - TSS region transcription start site region 111838
Tssr111839 11 116079766 to 116079785 19 - TSS region transcription start site region 111839
Tssr111840 11 116079788 to 116079799 11 - TSS region transcription start site region 111840
Tssr111841 11 116080263 to 116080274 11 - TSS region transcription start site region 111841
Tssr111842 11 116080280 to 116080316 36 - TSS region transcription start site region 111842
Tssr111843 11 116080341 to 116080353 12 - TSS region transcription start site region 111843
Tssr105944 11 116080606 to 116080621 15 + TSS region transcription start site region 105944
Tssr111844 11 116080616 to 116080628 12 - TSS region transcription start site region 111844
Tssr111845 11 116080663 to 116080675 12 - TSS region transcription start site region 111845
Cpgi4161 11 116086792 to 116087772 980 CpG island CpG island 4161