Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:115536575-115856600

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94 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi4140 11 115535288 to 115536771 1483 CpG island CpG island 4140
Cpgi4141 11 115563942 to 115564768 826 CpG island CpG island 4141
Tssr111771 11 115564117 to 115564130 13 - TSS region transcription start site region 111771
Nup85 11 115564436 to 115583924 19488 + protein coding gene nucleoporin 85
Tssr105884 11 115564437 to 115564490 53 + TSS region transcription start site region 105884
Tssr105885 11 115581765 to 115581776 11 + TSS region transcription start site region 105885
Gga3 11 115584255 to 115603925 19670 - protein coding gene golgi associated, gamma adaptin ear containing, ARF binding protein 3
Tssr111772 11 115590659 to 115590675 16 - TSS region transcription start site region 111772
Tssr111773 11 115590854 to 115590860 6 - TSS region transcription start site region 111773
Gm25364 11 115601656 to 115601762 106 + snRNA gene predicted gene, 25364
Cpgi4142 11 115603302 to 115604942 1640 CpG island CpG island 4142
Tssr111774 11 115603866 to 115603921 55 - TSS region transcription start site region 111774
Tssr105886 11 115603920 to 115603969 49 + TSS region transcription start site region 105886
Tssr105887 11 115603975 to 115603994 19 + TSS region transcription start site region 105887
Tssr105888 11 115604130 to 115604164 34 + TSS region transcription start site region 105888
Mrps7 11 115604151 to 115607624 3473 + protein coding gene mitchondrial ribosomal protein S7
Tssr105889 11 115604169 to 115604180 11 + TSS region transcription start site region 105889
Mif4gd 11 115607918 to 115612969 5051 - protein coding gene MIF4G domain containing
Obq33 11 115609643 to 115609643 0 QTL obesity QTL 33
Cpgi4143 11 115612001 to 115613272 1271 CpG island CpG island 4143
Tssr111775 11 115612491 to 115612503 12 - TSS region transcription start site region 111775
Tssr111776 11 115612507 to 115612547 40 - TSS region transcription start site region 111776
Tssr105890 11 115612602 to 115612611 9 + TSS region transcription start site region 105890
Tssr111777 11 115612896 to 115612907 11 - TSS region transcription start site region 111777
Tssr111778 11 115612913 to 115612937 24 - TSS region transcription start site region 111778
Tssr111779 11 115612940 to 115612975 35 - TSS region transcription start site region 111779
Tssr105891 11 115613485 to 115613500 15 + TSS region transcription start site region 105891
Slc25a19 11 115614178 to 115628295 14117 - protein coding gene solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19
Gm26613 11 115615462 to 115626707 11245 + lincRNA gene predicted gene, 26613
Tssr111780 11 115627702 to 115627709 7 - TSS region transcription start site region 111780
Cpgi4144 11 115627713 to 115628479 766 CpG island CpG island 4144
Tssr111781 11 115627727 to 115627738 11 - TSS region transcription start site region 111781
Tssr111782 11 115627743 to 115627759 16 - TSS region transcription start site region 111782
Tssr111783 11 115627761 to 115627791 30 - TSS region transcription start site region 111783
Tssr111784 11 115628093 to 115628122 29 - TSS region transcription start site region 111784
Tssr111785 11 115628125 to 115628164 39 - TSS region transcription start site region 111785
Tssr111786 11 115628233 to 115628250 17 - TSS region transcription start site region 111786
Tssr111787 11 115628260 to 115628298 38 - TSS region transcription start site region 111787
Tssr105892 11 115628404 to 115628423 19 + TSS region transcription start site region 105892
Grb2 11 115644045 to 115708597 64552 - protein coding gene growth factor receptor bound protein 2
Tssr111788 11 115645060 to 115645065 5 - TSS region transcription start site region 111788
Tssr111789 11 115645215 to 115645239 24 - TSS region transcription start site region 111789
Gm11702 11 115657491 to 115657559 68 - pseudogene predicted gene 11702
Tssr111790 11 115663806 to 115663810 4 - TSS region transcription start site region 111790
Tssr111791 11 115686178 to 115686194 16 - TSS region transcription start site region 111791
Tssr111792 11 115696575 to 115696600 25 - TSS region transcription start site region 111792
Tssr111793 11 115699257 to 115699268 11 - TSS region transcription start site region 111793
Tssr3733 11 115699278 to 115699281 3 - TSS region transcription start site region 3733
Tssr111794 11 115699313 to 115699324 11 - TSS region transcription start site region 111794
Tssr111795 11 115699331 to 115699404 73 - TSS region transcription start site region 111795
Tssr111796 11 115699427 to 115699438 11 - TSS region transcription start site region 111796
Tssr111797 11 115699461 to 115699514 53 - TSS region transcription start site region 111797
Tssr105893 11 115699593 to 115699642 49 + TSS region transcription start site region 105893
Cpgi4145 11 115707494 to 115709306 1812 CpG island CpG island 4145
Tssr105894 11 115708062 to 115708087 25 + TSS region transcription start site region 105894
Tssr111798 11 115708525 to 115708534 9 - TSS region transcription start site region 111798
Tssr111799 11 115708538 to 115708614 76 - TSS region transcription start site region 111799
Gm42096 11 115722656 to 115726901 4245 - lncRNA gene predicted gene, 42096
Gm11703 11 115724326 to 115724808 482 - pseudogene predicted gene 11703
Gm23699 11 115727143 to 115727277 134 + snoRNA gene predicted gene, 23699
Gm11704 11 115729466 to 115729679 213 + pseudogene predicted gene 11704
Tssr3734 11 115730695 to 115730697 2 + TSS region transcription start site region 3734
Cpgi4146 11 115765203 to 115766202 999 CpG island CpG island 4146
Tssr105895 11 115765420 to 115765466 46 + TSS region transcription start site region 105895
Tmem94 11 115765433 to 115799033 33600 + protein coding gene transmembrane protein 94
Tssr105896 11 115765500 to 115765533 33 + TSS region transcription start site region 105896
Tssr105897 11 115766676 to 115766738 62 + TSS region transcription start site region 105897
Tssr105898 11 115766780 to 115766796 16 + TSS region transcription start site region 105898
Tssr105899 11 115766801 to 115766821 20 + TSS region transcription start site region 105899
Gm46302 11 115773682 to 115777241 3559 - lncRNA gene predicted gene, 46302
Tssr105900 11 115776236 to 115776277 41 + TSS region transcription start site region 105900
Tssr105901 11 115780660 to 115780688 28 + TSS region transcription start site region 105901
Tssr105902 11 115780698 to 115780718 20 + TSS region transcription start site region 105902
Tssr105903 11 115780737 to 115780756 19 + TSS region transcription start site region 105903
Tssr105904 11 115780765 to 115780786 21 + TSS region transcription start site region 105904
Cpgi4147 11 115791851 to 115792121 270 CpG island CpG island 4147
Mir5621 11 115795824 to 115795886 62 + miRNA gene microRNA 5621
Caskin2 11 115799183 to 115813639 14456 - protein coding gene CASK-interacting protein 2
Tssr111800 11 115808068 to 115808106 38 - TSS region transcription start site region 111800
Tssr111801 11 115812136 to 115812230 94 - TSS region transcription start site region 111801
Cpgi4148 11 115813228 to 115815560 2332 CpG island CpG island 4148
Tssr111802 11 115813563 to 115813593 30 - TSS region transcription start site region 111802
Tssr111803 11 115813604 to 115813609 5 - TSS region transcription start site region 111803
Tssr111804 11 115813621 to 115813654 33 - TSS region transcription start site region 111804
Tssr105905 11 115814276 to 115814279 3 + TSS region transcription start site region 105905
Tsen54 11 115814724 to 115823094 8370 + protein coding gene tRNA splicing endonuclease subunit 54
Tssr105906 11 115814732 to 115814778 46 + TSS region transcription start site region 105906
Cpgi4149 11 115823624 to 115824776 1152 CpG island CpG island 4149
Tssr105907 11 115824029 to 115824097 68 + TSS region transcription start site region 105907
Llgl2 11 115824049 to 115855780 31731 + protein coding gene LLGL2 scribble cell polarity complex component
Tssr105908 11 115832804 to 115832820 16 + TSS region transcription start site region 105908
Tssr105909 11 115834338 to 115834349 11 + TSS region transcription start site region 105909
Tssr111805 11 115843981 to 115843986 5 - TSS region transcription start site region 111805
D11Jpk4 11 115846700 to 115846851 151 DNA segment DNA segment, Chr 11, Japan, Kominami 4