Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:115414102-115614122

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91 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Atp5h 11 115415691 to 115419919 4228 - protein coding gene ATP synthase, H+ transporting, mitochondrial F0 complex, subunit D
Tssr105863 11 115419316 to 115419348 32 + TSS region transcription start site region 105863
Cpgi4132 11 115419675 to 115420832 1157 CpG island CpG island 4132
Tssr111751 11 115419891 to 115419901 10 - TSS region transcription start site region 111751
Tssr111752 11 115419932 to 115419953 21 - TSS region transcription start site region 111752
Tssr105864 11 115420059 to 115420119 60 + TSS region transcription start site region 105864
Kctd2 11 115420128 to 115431274 11146 + protein coding gene potassium channel tetramerisation domain containing 2
Tssr105865 11 115420138 to 115420164 26 + TSS region transcription start site region 105865
Tssr111753 11 115420456 to 115420516 60 - TSS region transcription start site region 111753
Cpgi4133 11 115436013 to 115436169 156 CpG island CpG island 4133
Tssr105866 11 115440515 to 115440524 9 + TSS region transcription start site region 105866
Tssr105867 11 115440540 to 115440554 14 + TSS region transcription start site region 105867
Trim80 11 115440545 to 115448268 7723 + protein coding gene tripartite motif-containing 80
Cpgi4134 11 115441493 to 115441782 289 CpG island CpG island 4134
Mir3968 11 115447961 to 115448060 99 - miRNA gene microRNA 3968
Berr2 11 115461783 to 115461932 149 QTL berghei resistance locus 2
D11Mit338 11 115461783 to 115461932 149 DNA segment DNA Segment, Chr 11, Massachusetts Institute of Technology 338
D11Mit338.3 11 115461912 to 115462025 113 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 338.3
Tssr111754 11 115461912 to 115461932 20 - TSS region transcription start site region 111754
Gm11695 11 115462045 to 115463454 1409 - antisense lncRNA gene predicted gene 11695
Tssr105868 11 115462373 to 115462380 7 + TSS region transcription start site region 105868
Tssr105869 11 115462464 to 115462483 19 + TSS region transcription start site region 105869
Slc16a5 11 115462474 to 115474398 11924 + protein coding gene solute carrier family 16 (monocarboxylic acid transporters), member 5
Tssr105870 11 115462710 to 115462731 21 + TSS region transcription start site region 105870
Tssr111755 11 115462803 to 115462825 22 - TSS region transcription start site region 111755
Tssr111756 11 115463394 to 115463481 87 - TSS region transcription start site region 111756
Tssr111757 11 115463645 to 115463661 16 - TSS region transcription start site region 111757
Tssr111758 11 115463671 to 115463702 31 - TSS region transcription start site region 111758
Tssr105871 11 115463744 to 115463753 9 + TSS region transcription start site region 105871
Tssr105872 11 115463767 to 115463784 17 + TSS region transcription start site region 105872
Tssr105873 11 115463798 to 115463811 13 + TSS region transcription start site region 105873
Tssr105874 11 115463843 to 115463852 9 + TSS region transcription start site region 105874
Tssr105875 11 115465553 to 115465557 4 + TSS region transcription start site region 105875
Tssr3732 11 115466668 to 115466673 5 + TSS region transcription start site region 3732
Tssr105876 11 115466745 to 115466756 11 + TSS region transcription start site region 105876
Tssr105877 11 115468296 to 115468300 4 + TSS region transcription start site region 105877
Cpgi4135 11 115469344 to 115470085 741 CpG island CpG island 4135
Tssr111759 11 115474065 to 115474084 19 - TSS region transcription start site region 111759
Cpgi4136 11 115475377 to 115476262 885 CpG island CpG island 4136
Tssr105878 11 115475645 to 115475727 82 + TSS region transcription start site region 105878
Armc7 11 115475667 to 115490467 14800 + protein coding gene armadillo repeat containing 7
Tssr105879 11 115475743 to 115475790 47 + TSS region transcription start site region 105879
Tssr105880 11 115475802 to 115475829 27 + TSS region transcription start site region 105880
Tssr105881 11 115475972 to 115475976 4 + TSS region transcription start site region 105881
Tssr105882 11 115480928 to 115480950 22 + TSS region transcription start site region 105882
Cpgi4137 11 115488723 to 115488968 245 CpG island CpG island 4137
Nt5c 11 115490420 to 115491862 1442 - protein coding gene 5',3'-nucleotidase, cytosolic
Tssr111760 11 115490668 to 115490684 16 - TSS region transcription start site region 111760
Cpgi4138 11 115491119 to 115492070 951 CpG island CpG island 4138
Tssr111761 11 115491158 to 115491198 40 - TSS region transcription start site region 111761
Tssr111762 11 115491293 to 115491339 46 - TSS region transcription start site region 111762
Tssr111763 11 115491646 to 115491666 20 - TSS region transcription start site region 111763
Tssr111764 11 115491796 to 115491865 69 - TSS region transcription start site region 111764
Gm11694 11 115493024 to 115493182 158 + pseudogene predicted gene 11694
Jpt1 11 115497353 to 115514370 17017 - protein coding gene Jupiter microtubule associated homolog 1
Tssr111765 11 115498238 to 115498278 40 - TSS region transcription start site region 111765
Cpgi4139 11 115513455 to 115514631 1176 CpG island CpG island 4139
Tssr111766 11 115514102 to 115514122 20 - TSS region transcription start site region 111766
Tssr111767 11 115514142 to 115514152 10 - TSS region transcription start site region 111767
Tssr111768 11 115514374 to 115514393 19 - TSS region transcription start site region 111768
Sumo2 11 115523109 to 115536230 13121 - protein coding gene small ubiquitin-like modifier 2
Cpgi4140 11 115535288 to 115536771 1483 CpG island CpG island 4140
Tssr111769 11 115535804 to 115535863 59 - TSS region transcription start site region 111769
Tssr111770 11 115536236 to 115536267 31 - TSS region transcription start site region 111770
Tssr105883 11 115536471 to 115536516 45 + TSS region transcription start site region 105883
Cpgi4141 11 115563942 to 115564768 826 CpG island CpG island 4141
Tssr111771 11 115564117 to 115564130 13 - TSS region transcription start site region 111771
Nup85 11 115564436 to 115583924 19488 + protein coding gene nucleoporin 85
Tssr105884 11 115564437 to 115564490 53 + TSS region transcription start site region 105884
Tssr105885 11 115581765 to 115581776 11 + TSS region transcription start site region 105885
Gga3 11 115584255 to 115603925 19670 - protein coding gene golgi associated, gamma adaptin ear containing, ARF binding protein 3
Tssr111772 11 115590659 to 115590675 16 - TSS region transcription start site region 111772
Tssr111773 11 115590854 to 115590860 6 - TSS region transcription start site region 111773
Gm25364 11 115601656 to 115601762 106 + snRNA gene predicted gene, 25364
Cpgi4142 11 115603302 to 115604942 1640 CpG island CpG island 4142
Tssr111774 11 115603866 to 115603921 55 - TSS region transcription start site region 111774
Tssr105886 11 115603920 to 115603969 49 + TSS region transcription start site region 105886
Tssr105887 11 115603975 to 115603994 19 + TSS region transcription start site region 105887
Tssr105888 11 115604130 to 115604164 34 + TSS region transcription start site region 105888
Mrps7 11 115604151 to 115607624 3473 + protein coding gene mitchondrial ribosomal protein S7
Tssr105889 11 115604169 to 115604180 11 + TSS region transcription start site region 105889
Mif4gd 11 115607918 to 115612969 5051 - protein coding gene MIF4G domain containing
Obq33 11 115609643 to 115609643 0 QTL obesity QTL 33
Cpgi4143 11 115612001 to 115613272 1271 CpG island CpG island 4143
Tssr111775 11 115612491 to 115612503 12 - TSS region transcription start site region 111775
Tssr111776 11 115612507 to 115612547 40 - TSS region transcription start site region 111776
Tssr105890 11 115612602 to 115612611 9 + TSS region transcription start site region 105890
Tssr111777 11 115612896 to 115612907 11 - TSS region transcription start site region 111777
Tssr111778 11 115612913 to 115612937 24 - TSS region transcription start site region 111778
Tssr111779 11 115612940 to 115612975 35 - TSS region transcription start site region 111779
Tssr105891 11 115613485 to 115613500 15 + TSS region transcription start site region 105891