Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:115409313-115989324

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209 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Mrpl58 11 115403739 to 115410919 7180 + protein coding gene mitochondrial ribosomal protein L58
Cpgi4131 11 115412709 to 115413859 1150 CpG island CpG island 4131
Tssr105862 11 115412820 to 115412834 14 + TSS region transcription start site region 105862
n-TRcct5 11 115412981 to 115413053 72 + tRNA gene nuclear encoded tRNA arginine 5 (anticodon CCT)
n-TRcct3 11 115413304 to 115413376 72 - tRNA gene nuclear encoded tRNA arginine 3 (anticodon CCT)
n-TRtcg4 11 115413779 to 115413851 72 + tRNA gene nuclear encoded tRNA arginine 4 (anticodon TCG)
Atp5h 11 115415691 to 115419919 4228 - protein coding gene ATP synthase, H+ transporting, mitochondrial F0 complex, subunit D
Tssr105863 11 115419316 to 115419348 32 + TSS region transcription start site region 105863
Cpgi4132 11 115419675 to 115420832 1157 CpG island CpG island 4132
Tssr111751 11 115419891 to 115419901 10 - TSS region transcription start site region 111751
Tssr111752 11 115419932 to 115419953 21 - TSS region transcription start site region 111752
Tssr105864 11 115420059 to 115420119 60 + TSS region transcription start site region 105864
Kctd2 11 115420128 to 115431274 11146 + protein coding gene potassium channel tetramerisation domain containing 2
Tssr105865 11 115420138 to 115420164 26 + TSS region transcription start site region 105865
Tssr111753 11 115420456 to 115420516 60 - TSS region transcription start site region 111753
Cpgi4133 11 115436013 to 115436169 156 CpG island CpG island 4133
Tssr105866 11 115440515 to 115440524 9 + TSS region transcription start site region 105866
Tssr105867 11 115440540 to 115440554 14 + TSS region transcription start site region 105867
Trim80 11 115440545 to 115448268 7723 + protein coding gene tripartite motif-containing 80
Cpgi4134 11 115441493 to 115441782 289 CpG island CpG island 4134
Mir3968 11 115447961 to 115448060 99 - miRNA gene microRNA 3968
Berr2 11 115461783 to 115461932 149 QTL berghei resistance locus 2
D11Mit338 11 115461783 to 115461932 149 DNA segment DNA Segment, Chr 11, Massachusetts Institute of Technology 338
Tssr111754 11 115461912 to 115461932 20 - TSS region transcription start site region 111754
D11Mit338.3 11 115461912 to 115462025 113 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 338.3
Gm11695 11 115462045 to 115463454 1409 - antisense lncRNA gene predicted gene 11695
Tssr105868 11 115462373 to 115462380 7 + TSS region transcription start site region 105868
Tssr105869 11 115462464 to 115462483 19 + TSS region transcription start site region 105869
Slc16a5 11 115462474 to 115474398 11924 + protein coding gene solute carrier family 16 (monocarboxylic acid transporters), member 5
Tssr105870 11 115462710 to 115462731 21 + TSS region transcription start site region 105870
Tssr111755 11 115462803 to 115462825 22 - TSS region transcription start site region 111755
Tssr111756 11 115463394 to 115463481 87 - TSS region transcription start site region 111756
Tssr111757 11 115463645 to 115463661 16 - TSS region transcription start site region 111757
Tssr111758 11 115463671 to 115463702 31 - TSS region transcription start site region 111758
Tssr105871 11 115463744 to 115463753 9 + TSS region transcription start site region 105871
Tssr105872 11 115463767 to 115463784 17 + TSS region transcription start site region 105872
Tssr105873 11 115463798 to 115463811 13 + TSS region transcription start site region 105873
Tssr105874 11 115463843 to 115463852 9 + TSS region transcription start site region 105874
Tssr105875 11 115465553 to 115465557 4 + TSS region transcription start site region 105875
Tssr3732 11 115466668 to 115466673 5 + TSS region transcription start site region 3732
Tssr105876 11 115466745 to 115466756 11 + TSS region transcription start site region 105876
Tssr105877 11 115468296 to 115468300 4 + TSS region transcription start site region 105877
Cpgi4135 11 115469344 to 115470085 741 CpG island CpG island 4135
Tssr111759 11 115474065 to 115474084 19 - TSS region transcription start site region 111759
Cpgi4136 11 115475377 to 115476262 885 CpG island CpG island 4136
Tssr105878 11 115475645 to 115475727 82 + TSS region transcription start site region 105878
Armc7 11 115475667 to 115490467 14800 + protein coding gene armadillo repeat containing 7
Tssr105879 11 115475743 to 115475790 47 + TSS region transcription start site region 105879
Tssr105880 11 115475802 to 115475829 27 + TSS region transcription start site region 105880
Tssr105881 11 115475972 to 115475976 4 + TSS region transcription start site region 105881
Tssr105882 11 115480928 to 115480950 22 + TSS region transcription start site region 105882
Cpgi4137 11 115488723 to 115488968 245 CpG island CpG island 4137
Nt5c 11 115490420 to 115491862 1442 - protein coding gene 5',3'-nucleotidase, cytosolic
Tssr111760 11 115490668 to 115490684 16 - TSS region transcription start site region 111760
Cpgi4138 11 115491119 to 115492070 951 CpG island CpG island 4138
Tssr111761 11 115491158 to 115491198 40 - TSS region transcription start site region 111761
Tssr111762 11 115491293 to 115491339 46 - TSS region transcription start site region 111762
Tssr111763 11 115491646 to 115491666 20 - TSS region transcription start site region 111763
Tssr111764 11 115491796 to 115491865 69 - TSS region transcription start site region 111764
Gm11694 11 115493024 to 115493182 158 + pseudogene predicted gene 11694
Jpt1 11 115497353 to 115514370 17017 - protein coding gene Jupiter microtubule associated homolog 1
Tssr111765 11 115498238 to 115498278 40 - TSS region transcription start site region 111765
Cpgi4139 11 115513455 to 115514631 1176 CpG island CpG island 4139
Tssr111766 11 115514102 to 115514122 20 - TSS region transcription start site region 111766
Tssr111767 11 115514142 to 115514152 10 - TSS region transcription start site region 111767
Tssr111768 11 115514374 to 115514393 19 - TSS region transcription start site region 111768
Sumo2 11 115523109 to 115536230 13121 - protein coding gene small ubiquitin-like modifier 2
Cpgi4140 11 115535288 to 115536771 1483 CpG island CpG island 4140
Tssr111769 11 115535804 to 115535863 59 - TSS region transcription start site region 111769
Tssr111770 11 115536236 to 115536267 31 - TSS region transcription start site region 111770
Tssr105883 11 115536471 to 115536516 45 + TSS region transcription start site region 105883
Cpgi4141 11 115563942 to 115564768 826 CpG island CpG island 4141
Tssr111771 11 115564117 to 115564130 13 - TSS region transcription start site region 111771
Nup85 11 115564436 to 115583924 19488 + protein coding gene nucleoporin 85
Tssr105884 11 115564437 to 115564490 53 + TSS region transcription start site region 105884
Tssr105885 11 115581765 to 115581776 11 + TSS region transcription start site region 105885
Gga3 11 115584255 to 115603925 19670 - protein coding gene golgi associated, gamma adaptin ear containing, ARF binding protein 3
Tssr111772 11 115590659 to 115590675 16 - TSS region transcription start site region 111772
Tssr111773 11 115590854 to 115590860 6 - TSS region transcription start site region 111773
Gm25364 11 115601656 to 115601762 106 + snRNA gene predicted gene, 25364
Cpgi4142 11 115603302 to 115604942 1640 CpG island CpG island 4142
Tssr111774 11 115603866 to 115603921 55 - TSS region transcription start site region 111774
Tssr105886 11 115603920 to 115603969 49 + TSS region transcription start site region 105886
Tssr105887 11 115603975 to 115603994 19 + TSS region transcription start site region 105887
Tssr105888 11 115604130 to 115604164 34 + TSS region transcription start site region 105888
Mrps7 11 115604151 to 115607624 3473 + protein coding gene mitchondrial ribosomal protein S7
Tssr105889 11 115604169 to 115604180 11 + TSS region transcription start site region 105889
Mif4gd 11 115607918 to 115612969 5051 - protein coding gene MIF4G domain containing
Obq33 11 115609643 to 115609643 0 QTL obesity QTL 33
Cpgi4143 11 115612001 to 115613272 1271 CpG island CpG island 4143
Tssr111775 11 115612491 to 115612503 12 - TSS region transcription start site region 111775
Tssr111776 11 115612507 to 115612547 40 - TSS region transcription start site region 111776
Tssr105890 11 115612602 to 115612611 9 + TSS region transcription start site region 105890
Tssr111777 11 115612896 to 115612907 11 - TSS region transcription start site region 111777
Tssr111778 11 115612913 to 115612937 24 - TSS region transcription start site region 111778
Tssr111779 11 115612940 to 115612975 35 - TSS region transcription start site region 111779
Tssr105891 11 115613485 to 115613500 15 + TSS region transcription start site region 105891
Slc25a19 11 115614178 to 115628295 14117 - protein coding gene solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19
Gm26613 11 115615462 to 115626707 11245 + lincRNA gene predicted gene, 26613
Tssr111780 11 115627702 to 115627709 7 - TSS region transcription start site region 111780
Cpgi4144 11 115627713 to 115628479 766 CpG island CpG island 4144
Tssr111781 11 115627727 to 115627738 11 - TSS region transcription start site region 111781
Tssr111782 11 115627743 to 115627759 16 - TSS region transcription start site region 111782
Tssr111783 11 115627761 to 115627791 30 - TSS region transcription start site region 111783
Tssr111784 11 115628093 to 115628122 29 - TSS region transcription start site region 111784
Tssr111785 11 115628125 to 115628164 39 - TSS region transcription start site region 111785
Tssr111786 11 115628233 to 115628250 17 - TSS region transcription start site region 111786
Tssr111787 11 115628260 to 115628298 38 - TSS region transcription start site region 111787
Tssr105892 11 115628404 to 115628423 19 + TSS region transcription start site region 105892
Grb2 11 115644045 to 115708597 64552 - protein coding gene growth factor receptor bound protein 2
Tssr111788 11 115645060 to 115645065 5 - TSS region transcription start site region 111788
Tssr111789 11 115645215 to 115645239 24 - TSS region transcription start site region 111789
Gm11702 11 115657491 to 115657559 68 - pseudogene predicted gene 11702
Tssr111790 11 115663806 to 115663810 4 - TSS region transcription start site region 111790
Tssr111791 11 115686178 to 115686194 16 - TSS region transcription start site region 111791
Tssr111792 11 115696575 to 115696600 25 - TSS region transcription start site region 111792
Tssr111793 11 115699257 to 115699268 11 - TSS region transcription start site region 111793
Tssr3733 11 115699278 to 115699281 3 - TSS region transcription start site region 3733
Tssr111794 11 115699313 to 115699324 11 - TSS region transcription start site region 111794
Tssr111795 11 115699331 to 115699404 73 - TSS region transcription start site region 111795
Tssr111796 11 115699427 to 115699438 11 - TSS region transcription start site region 111796
Tssr111797 11 115699461 to 115699514 53 - TSS region transcription start site region 111797
Tssr105893 11 115699593 to 115699642 49 + TSS region transcription start site region 105893
Cpgi4145 11 115707494 to 115709306 1812 CpG island CpG island 4145
Tssr105894 11 115708062 to 115708087 25 + TSS region transcription start site region 105894
Tssr111798 11 115708525 to 115708534 9 - TSS region transcription start site region 111798
Tssr111799 11 115708538 to 115708614 76 - TSS region transcription start site region 111799
Gm42096 11 115722656 to 115726901 4245 - lncRNA gene predicted gene, 42096
Gm11703 11 115724326 to 115724808 482 - pseudogene predicted gene 11703
Gm23699 11 115727143 to 115727277 134 + snoRNA gene predicted gene, 23699
Gm11704 11 115729466 to 115729679 213 + pseudogene predicted gene 11704
Tssr3734 11 115730695 to 115730697 2 + TSS region transcription start site region 3734
Cpgi4146 11 115765203 to 115766202 999 CpG island CpG island 4146
Tssr105895 11 115765420 to 115765466 46 + TSS region transcription start site region 105895
Tmem94 11 115765433 to 115799033 33600 + protein coding gene transmembrane protein 94
Tssr105896 11 115765500 to 115765533 33 + TSS region transcription start site region 105896
Tssr105897 11 115766676 to 115766738 62 + TSS region transcription start site region 105897
Tssr105898 11 115766780 to 115766796 16 + TSS region transcription start site region 105898
Tssr105899 11 115766801 to 115766821 20 + TSS region transcription start site region 105899
Gm46302 11 115773682 to 115777241 3559 - lncRNA gene predicted gene, 46302
Tssr105900 11 115776236 to 115776277 41 + TSS region transcription start site region 105900
Tssr105901 11 115780660 to 115780688 28 + TSS region transcription start site region 105901
Tssr105902 11 115780698 to 115780718 20 + TSS region transcription start site region 105902
Tssr105903 11 115780737 to 115780756 19 + TSS region transcription start site region 105903
Tssr105904 11 115780765 to 115780786 21 + TSS region transcription start site region 105904
Cpgi4147 11 115791851 to 115792121 270 CpG island CpG island 4147
Mir5621 11 115795824 to 115795886 62 + miRNA gene microRNA 5621
Caskin2 11 115799183 to 115813639 14456 - protein coding gene CASK-interacting protein 2
Tssr111800 11 115808068 to 115808106 38 - TSS region transcription start site region 111800
Tssr111801 11 115812136 to 115812230 94 - TSS region transcription start site region 111801
Cpgi4148 11 115813228 to 115815560 2332 CpG island CpG island 4148
Tssr111802 11 115813563 to 115813593 30 - TSS region transcription start site region 111802
Tssr111803 11 115813604 to 115813609 5 - TSS region transcription start site region 111803
Tssr111804 11 115813621 to 115813654 33 - TSS region transcription start site region 111804
Tssr105905 11 115814276 to 115814279 3 + TSS region transcription start site region 105905
Tsen54 11 115814724 to 115823094 8370 + protein coding gene tRNA splicing endonuclease subunit 54
Tssr105906 11 115814732 to 115814778 46 + TSS region transcription start site region 105906
Cpgi4149 11 115823624 to 115824776 1152 CpG island CpG island 4149
Tssr105907 11 115824029 to 115824097 68 + TSS region transcription start site region 105907
Llgl2 11 115824049 to 115855780 31731 + protein coding gene LLGL2 scribble cell polarity complex component
Tssr105908 11 115832804 to 115832820 16 + TSS region transcription start site region 105908
Tssr105909 11 115834338 to 115834349 11 + TSS region transcription start site region 105909
Tssr111805 11 115843981 to 115843986 5 - TSS region transcription start site region 111805
D11Jpk4 11 115846700 to 115846851 151 DNA segment DNA segment, Chr 11, Japan, Kominami 4
Cpgi4150 11 115858123 to 115860329 2206 CpG island CpG island 4150
Myo15b 11 115858406 to 115892603 34197 + protein coding gene myosin XVB
Tssr111806 11 115871325 to 115871326 1 - TSS region transcription start site region 111806
Tssr105910 11 115877497 to 115877548 51 + TSS region transcription start site region 105910
D11Dcr38 11 115879431 to 115879526 95 DNA segment DNA Segment, Chr 11, Derry C. Roopenian 38
Tssr105911 11 115882890 to 115882901 11 + TSS region transcription start site region 105911
Tssr105912 11 115882931 to 115882957 26 + TSS region transcription start site region 105912
Cpgi4151 11 115883506 to 115883830 324 CpG island CpG island 4151
Tssr111807 11 115885231 to 115885236 5 - TSS region transcription start site region 111807
Tssr105913 11 115887610 to 115887651 41 + TSS region transcription start site region 105913
Recql5 11 115892595 to 115933477 40882 - protein coding gene RecQ protein-like 5
Tssr105914 11 115899844 to 115899879 35 + TSS region transcription start site region 105914
Tssr105915 11 115899943 to 115899954 11 + TSS region transcription start site region 105915
Smim5 11 115899966 to 115906269 6303 + protein coding gene small integral membrane protein 5
Tssr105916 11 115899985 to 115899999 14 + TSS region transcription start site region 105916
Tssr105917 11 115900125 to 115900190 65 + TSS region transcription start site region 105917
Tssr105918 11 115912001 to 115912025 24 + TSS region transcription start site region 105918
Smim6 11 115912017 to 115913917 1900 + protein coding gene small integral membrane protein 6
Tssr105919 11 115912063 to 115912076 13 + TSS region transcription start site region 105919
Tssr105920 11 115912280 to 115912303 23 + TSS region transcription start site region 105920
Tssr105921 11 115912315 to 115912335 20 + TSS region transcription start site region 105921
Recql5os1 11 115925027 to 115926143 1116 + antisense lncRNA gene RecQ-like 5, opposite strand 1
Cpgi4152 11 115933428 to 115934052 624 CpG island CpG island 4152
Tssr111808 11 115933464 to 115933498 34 - TSS region transcription start site region 111808
Sap30bp 11 115933578 to 115965534 31956 + protein coding gene SAP30 binding protein
Tssr105922 11 115933629 to 115933669 40 + TSS region transcription start site region 105922
Gm39474 11 115939872 to 115942275 2403 - lncRNA gene predicted gene, 39474
Sap30bpos 11 115946450 to 115952105 5655 - antisense lncRNA gene SAP30 binding protein, opposite strand
Tssr105923 11 115971232 to 115971276 44 + TSS region transcription start site region 105923
Tssr105924 11 115974550 to 115974555 5 + TSS region transcription start site region 105924
Cpgi4153 11 115974556 to 115975589 1033 CpG island CpG island 4153
Tssr105925 11 115974559 to 115974577 18 + TSS region transcription start site region 105925
Itgb4 11 115974725 to 116008412 33687 + protein coding gene integrin beta 4
Tssr105926 11 115974740 to 115974752 12 + TSS region transcription start site region 105926
Tssr105927 11 115974778 to 115974781 3 + TSS region transcription start site region 105927
Tssr105928 11 115974869 to 115974876 7 + TSS region transcription start site region 105928