Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:115314094-115434602

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43 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Otop2 11 115307163 to 115332303 25140 + protein coding gene otopetrin 2
Ush1g 11 115315192 to 115322041 6849 - protein coding gene USH1 protein network component sans
Cpgi4119 11 115318048 to 115319210 1162 CpG island CpG island 4119
Cpgi4120 11 115320084 to 115320319 235 CpG island CpG island 4120
Cpgi4121 11 115321836 to 115323032 1196 CpG island CpG island 4121
Tssr111748 11 115322025 to 115322064 39 - TSS region transcription start site region 111748
Cpgi4122 11 115323400 to 115323887 487 CpG island CpG island 4122
Tssr105856 11 115323545 to 115323573 28 + TSS region transcription start site region 105856
Cpgi4123 11 115329143 to 115329588 445 CpG island CpG island 4123
Cpgi4124 11 115334402 to 115334888 486 CpG island CpG island 4124
Otop3 11 115334731 to 115346927 12196 + protein coding gene otopetrin 3
Tssr105857 11 115334788 to 115334849 61 + TSS region transcription start site region 105857
Cpgi4125 11 115344539 to 115344872 333 CpG island CpG island 4125
Hid1 11 115347705 to 115367751 20046 - protein coding gene HID1 domain containing
Cpgi4126 11 115366881 to 115367928 1047 CpG island CpG island 4126
Tssr111749 11 115367670 to 115367679 9 - TSS region transcription start site region 111749
Tssr111750 11 115367687 to 115367734 47 - TSS region transcription start site region 111750
Cpgi4127 11 115374094 to 115374602 508 CpG island CpG island 4127
Cpgi4128 11 115381454 to 115382689 1235 CpG island CpG island 4128
Tssr105858 11 115381867 to 115381899 32 + TSS region transcription start site region 105858
Tssr105859 11 115381906 to 115381933 27 + TSS region transcription start site region 105859
Cdr2l 11 115381916 to 115396132 14216 + protein coding gene cerebellar degeneration-related protein 2-like
Cpgi4129 11 115393355 to 115394205 850 CpG island CpG island 4129
Tssr105860 11 115394636 to 115394642 6 + TSS region transcription start site region 105860
Gm32013 11 115397170 to 115401253 4083 - lncRNA gene predicted gene, 32013
Cpgi4130 11 115403594 to 115404300 706 CpG island CpG island 4130
Tssr105861 11 115403734 to 115403777 43 + TSS region transcription start site region 105861
Mrpl58 11 115403739 to 115410919 7180 + protein coding gene mitochondrial ribosomal protein L58
Ict1os 11 115406586 to 115408314 1728 - antisense lncRNA gene immature colon carcinoma transcript 1, opposite strand
Cpgi4131 11 115412709 to 115413859 1150 CpG island CpG island 4131
Tssr105862 11 115412820 to 115412834 14 + TSS region transcription start site region 105862
n-TRcct5 11 115412981 to 115413053 72 + tRNA gene nuclear encoded tRNA arginine 5 (anticodon CCT)
n-TRcct3 11 115413304 to 115413376 72 - tRNA gene nuclear encoded tRNA arginine 3 (anticodon CCT)
n-TRtcg4 11 115413779 to 115413851 72 + tRNA gene nuclear encoded tRNA arginine 4 (anticodon TCG)
Atp5h 11 115415691 to 115419919 4228 - protein coding gene ATP synthase, H+ transporting, mitochondrial F0 complex, subunit D
Tssr105863 11 115419316 to 115419348 32 + TSS region transcription start site region 105863
Cpgi4132 11 115419675 to 115420832 1157 CpG island CpG island 4132
Tssr111751 11 115419891 to 115419901 10 - TSS region transcription start site region 111751
Tssr111752 11 115419932 to 115419953 21 - TSS region transcription start site region 111752
Tssr105864 11 115420059 to 115420119 60 + TSS region transcription start site region 105864
Kctd2 11 115420128 to 115431274 11146 + protein coding gene potassium channel tetramerisation domain containing 2
Tssr105865 11 115420138 to 115420164 26 + TSS region transcription start site region 105865
Tssr111753 11 115420456 to 115420516 60 - TSS region transcription start site region 111753