Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:115102421-115452429

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122 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cia40 11 103383166 to 115130618 11747452 QTL collagen induced arthritis QTL 40
Rab37 11 115091431 to 115162236 70805 + protein coding gene RAB37, member RAS oncogene family
Cd300lf 11 115116214 to 115133992 17778 - protein coding gene CD300 molecule like family member F
Tssr111722 11 115116632 to 115116674 42 - TSS region transcription start site region 111722
Tssr111723 11 115123643 to 115123689 46 - TSS region transcription start site region 111723
Tssr111724 11 115125918 to 115125943 25 - TSS region transcription start site region 111724
D11Dcr29 11 115130458 to 115130619 161 DNA segment DNA Segment, Chr 11, Derry C. Roopenian 29
D11Mit214 11 115130471 to 115130618 147 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 214
Tssr111725 11 115133906 to 115133916 10 - TSS region transcription start site region 111725
Tssr111726 11 115133921 to 115133927 6 - TSS region transcription start site region 111726
Tssr111727 11 115133928 to 115133949 21 - TSS region transcription start site region 111727
Tssr111728 11 115133955 to 115133966 11 - TSS region transcription start site region 111728
Tssr111729 11 115133981 to 115133996 15 - TSS region transcription start site region 111729
Tssr105837 11 115134040 to 115134049 9 + TSS region transcription start site region 105837
Cpgi4108 11 115153763 to 115154390 627 CpG island CpG island 4108
Tssr105838 11 115154139 to 115154194 55 + TSS region transcription start site region 105838
Tssr105839 11 115154202 to 115154210 8 + TSS region transcription start site region 105839
Cpgi4109 11 115162920 to 115164329 1409 CpG island CpG island 4109
Tssr111730 11 115163129 to 115163135 6 - TSS region transcription start site region 111730
Tssr105840 11 115163333 to 115163348 15 + TSS region transcription start site region 105840
Slc9a3r1 11 115163341 to 115181178 17837 + protein coding gene solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 1
Tssr3727 11 115163356 to 115163371 15 + TSS region transcription start site region 3727
Tssr105841 11 115163374 to 115163383 9 + TSS region transcription start site region 105841
Tssr105842 11 115163400 to 115163413 13 + TSS region transcription start site region 105842
Tssr105843 11 115163417 to 115163419 2 + TSS region transcription start site region 105843
Tssr105844 11 115163438 to 115163449 11 + TSS region transcription start site region 105844
Cpgi4110 11 115164734 to 115165134 400 CpG island CpG island 4110
Tssr105845 11 115170910 to 115170919 9 + TSS region transcription start site region 105845
Tssr105846 11 115180027 to 115180040 13 + TSS region transcription start site region 105846
Tssr105847 11 115180309 to 115180320 11 + TSS region transcription start site region 105847
Tssr105848 11 115180955 to 115180959 4 + TSS region transcription start site region 105848
Nat9 11 115182832 to 115187859 5027 - protein coding gene N-acetyltransferase 9 (GCN5-related, putative)
Cpgi4111 11 115187016 to 115187967 951 CpG island CpG island 4111
Tssr111731 11 115187258 to 115187284 26 - TSS region transcription start site region 111731
Tssr111732 11 115187290 to 115187318 28 - TSS region transcription start site region 111732
Tssr111733 11 115187321 to 115187359 38 - TSS region transcription start site region 111733
Tssr105849 11 115187481 to 115187562 81 + TSS region transcription start site region 105849
Tmem104 11 115187487 to 115247023 59536 + protein coding gene transmembrane protein 104
Tssr3728 11 115187568 to 115187571 3 + TSS region transcription start site region 3728
Tssr111734 11 115187827 to 115187836 9 - TSS region transcription start site region 111734
Tssr111735 11 115187859 to 115187868 9 - TSS region transcription start site region 111735
Tssr3729 11 115188655 to 115188680 25 - TSS region transcription start site region 3729
Tssr111736 11 115188764 to 115188774 10 - TSS region transcription start site region 111736
Tssr3730 11 115189577 to 115189627 50 + TSS region transcription start site region 3730
Tssr105850 11 115215760 to 115215768 8 + TSS region transcription start site region 105850
Cpgi4112 11 115223498 to 115223669 171 CpG island CpG island 4112
Tssr105851 11 115245262 to 115245280 18 + TSS region transcription start site region 105851
Grin2c 11 115249169 to 115267243 18074 - protein coding gene glutamate receptor, ionotropic, NMDA2C (epsilon 3)
Cpgi4113 11 115249527 to 115250796 1269 CpG island CpG island 4113
Gm25837 11 115253278 to 115253385 107 + miRNA gene predicted gene, 25837
Cpgi4114 11 115257760 to 115258434 674 CpG island CpG island 4114
Cpgi4115 11 115265098 to 115265741 643 CpG island CpG island 4115
Cpgi4116 11 115265948 to 115267550 1602 CpG island CpG island 4116
Tssr111737 11 115267236 to 115267249 13 - TSS region transcription start site region 111737
Fdxr 11 115268024 to 115277050 9026 - protein coding gene ferredoxin reductase
Cpgi4117 11 115276695 to 115277461 766 CpG island CpG island 4117
Tssr111738 11 115276892 to 115276906 14 - TSS region transcription start site region 111738
Tssr111739 11 115276916 to 115276943 27 - TSS region transcription start site region 111739
Tssr111740 11 115276952 to 115276972 20 - TSS region transcription start site region 111740
Tssr111741 11 115276973 to 115276984 11 - TSS region transcription start site region 111741
Tssr105852 11 115277421 to 115277429 8 + TSS region transcription start site region 105852
Fads6 11 115279622 to 115297663 18041 - protein coding gene fatty acid desaturase domain family, member 6
Tssr111742 11 115285445 to 115285469 24 - TSS region transcription start site region 111742
Tssr111743 11 115291534 to 115291558 24 - TSS region transcription start site region 111743
Cpgi4118 11 115297039 to 115297814 775 CpG island CpG island 4118
Tssr111744 11 115297496 to 115297501 5 - TSS region transcription start site region 111744
Tssr3731 11 115297501 to 115297508 7 - TSS region transcription start site region 3731
Tssr111745 11 115297510 to 115297519 9 - TSS region transcription start site region 111745
Tssr111746 11 115297521 to 115297580 59 - TSS region transcription start site region 111746
Tssr111747 11 115297618 to 115297631 13 - TSS region transcription start site region 111747
Tssr105853 11 115307144 to 115307153 9 + TSS region transcription start site region 105853
Tssr105854 11 115307155 to 115307164 9 + TSS region transcription start site region 105854
Otop2 11 115307163 to 115332303 25140 + protein coding gene otopetrin 2
Tssr105855 11 115307207 to 115307227 20 + TSS region transcription start site region 105855
Ush1g 11 115315192 to 115322041 6849 - protein coding gene USH1 protein network component sans
Cpgi4119 11 115318048 to 115319210 1162 CpG island CpG island 4119
Cpgi4120 11 115320084 to 115320319 235 CpG island CpG island 4120
Cpgi4121 11 115321836 to 115323032 1196 CpG island CpG island 4121
Tssr111748 11 115322025 to 115322064 39 - TSS region transcription start site region 111748
Cpgi4122 11 115323400 to 115323887 487 CpG island CpG island 4122
Tssr105856 11 115323545 to 115323573 28 + TSS region transcription start site region 105856
Cpgi4123 11 115329143 to 115329588 445 CpG island CpG island 4123
Cpgi4124 11 115334402 to 115334888 486 CpG island CpG island 4124
Otop3 11 115334731 to 115346927 12196 + protein coding gene otopetrin 3
Tssr105857 11 115334788 to 115334849 61 + TSS region transcription start site region 105857
Cpgi4125 11 115344539 to 115344872 333 CpG island CpG island 4125
Hid1 11 115347705 to 115367751 20046 - protein coding gene HID1 domain containing
Cpgi4126 11 115366881 to 115367928 1047 CpG island CpG island 4126
Tssr111749 11 115367670 to 115367679 9 - TSS region transcription start site region 111749
Tssr111750 11 115367687 to 115367734 47 - TSS region transcription start site region 111750
Cpgi4127 11 115374094 to 115374602 508 CpG island CpG island 4127
Cpgi4128 11 115381454 to 115382689 1235 CpG island CpG island 4128
Tssr105858 11 115381867 to 115381899 32 + TSS region transcription start site region 105858
Tssr105859 11 115381906 to 115381933 27 + TSS region transcription start site region 105859
Cdr2l 11 115381916 to 115396132 14216 + protein coding gene cerebellar degeneration-related protein 2-like
Cpgi4129 11 115393355 to 115394205 850 CpG island CpG island 4129
Tssr105860 11 115394636 to 115394642 6 + TSS region transcription start site region 105860
Gm32013 11 115397170 to 115401253 4083 - lncRNA gene predicted gene, 32013
Cpgi4130 11 115403594 to 115404300 706 CpG island CpG island 4130
Tssr105861 11 115403734 to 115403777 43 + TSS region transcription start site region 105861
Mrpl58 11 115403739 to 115410919 7180 + protein coding gene mitochondrial ribosomal protein L58
Ict1os 11 115406586 to 115408314 1728 - antisense lncRNA gene immature colon carcinoma transcript 1, opposite strand
Cpgi4131 11 115412709 to 115413859 1150 CpG island CpG island 4131
Tssr105862 11 115412820 to 115412834 14 + TSS region transcription start site region 105862
n-TRcct5 11 115412981 to 115413053 72 + tRNA gene nuclear encoded tRNA arginine 5 (anticodon CCT)
n-TRcct3 11 115413304 to 115413376 72 - tRNA gene nuclear encoded tRNA arginine 3 (anticodon CCT)
n-TRtcg4 11 115413779 to 115413851 72 + tRNA gene nuclear encoded tRNA arginine 4 (anticodon TCG)
Atp5h 11 115415691 to 115419919 4228 - protein coding gene ATP synthase, H+ transporting, mitochondrial F0 complex, subunit D
Tssr105863 11 115419316 to 115419348 32 + TSS region transcription start site region 105863
Cpgi4132 11 115419675 to 115420832 1157 CpG island CpG island 4132
Tssr111751 11 115419891 to 115419901 10 - TSS region transcription start site region 111751
Tssr111752 11 115419932 to 115419953 21 - TSS region transcription start site region 111752
Tssr105864 11 115420059 to 115420119 60 + TSS region transcription start site region 105864
Kctd2 11 115420128 to 115431274 11146 + protein coding gene potassium channel tetramerisation domain containing 2
Tssr105865 11 115420138 to 115420164 26 + TSS region transcription start site region 105865
Tssr111753 11 115420456 to 115420516 60 - TSS region transcription start site region 111753
Cpgi4133 11 115436013 to 115436169 156 CpG island CpG island 4133
Tssr105866 11 115440515 to 115440524 9 + TSS region transcription start site region 105866
Tssr105867 11 115440540 to 115440554 14 + TSS region transcription start site region 105867
Trim80 11 115440545 to 115448268 7723 + protein coding gene tripartite motif-containing 80
Cpgi4134 11 115441493 to 115441782 289 CpG island CpG island 4134
Mir3968 11 115447961 to 115448060 99 - miRNA gene microRNA 3968