Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:11500313-11880329

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82 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Spata48 11 11463247 to 11515192 51945 + protein coding gene spermatogenesis associated 48
Tssr106866 11 11519450 to 11519457 7 - TSS region transcription start site region 106866
Tssr100348 11 11522213 to 11522251 38 + TSS region transcription start site region 100348
Gm29945 11 11552098 to 11558891 6793 - lncRNA gene predicted gene, 29945
Tssr100349 11 11557388 to 11557398 10 + TSS region transcription start site region 100349
Tssr100350 11 11557401 to 11557431 30 + TSS region transcription start site region 100350
Gm11998 11 11557421 to 11579460 22039 + antisense lncRNA gene predicted gene 11998
Tssr100351 11 11557932 to 11557943 11 + TSS region transcription start site region 100351
Tssr100352 11 11558007 to 11558026 19 + TSS region transcription start site region 100352
Tssr106867 11 11565310 to 11565315 5 - TSS region transcription start site region 106867
4930512M02Rik 11 11589223 to 11627835 38612 - protein coding gene RIKEN cDNA 4930512M02 gene
Tssr100353 11 11641101 to 11641108 7 + TSS region transcription start site region 100353
Gm11999 11 11642203 to 11685400 43197 - lncRNA gene predicted gene 11999
Tssr106868 11 11657226 to 11657262 36 - TSS region transcription start site region 106868
Tssr100354 11 11667768 to 11667791 23 + TSS region transcription start site region 100354
Tssr106869 11 11675214 to 11675221 7 - TSS region transcription start site region 106869
Cpgi2583 11 11684583 to 11686691 2108 CpG island CpG island 2583
Tssr100355 11 11684950 to 11684955 5 + TSS region transcription start site region 100355
Tssr100356 11 11684967 to 11685027 60 + TSS region transcription start site region 100356
Ikzf1 11 11685003 to 11772926 87923 + protein coding gene IKAROS family zinc finger 1
Tssr100357 11 11685542 to 11685553 11 + TSS region transcription start site region 100357
Tssr106870 11 11685624 to 11685655 31 - TSS region transcription start site region 106870
Tssr100358 11 11685675 to 11685742 67 + TSS region transcription start site region 100358
Tssr3428 11 11685906 to 11685907 1 + TSS region transcription start site region 3428
Tssr100359 11 11685909 to 11685947 38 + TSS region transcription start site region 100359
Tssr100360 11 11686215 to 11686282 67 + TSS region transcription start site region 100360
Tssr100361 11 11686297 to 11686322 25 + TSS region transcription start site region 100361
Tssr100362 11 11686398 to 11686403 5 + TSS region transcription start site region 100362
Tssr106871 11 11686705 to 11686736 31 - TSS region transcription start site region 106871
Tssr100363 11 11687717 to 11687732 15 + TSS region transcription start site region 100363
Tssr100364 11 11687747 to 11687756 9 + TSS region transcription start site region 100364
Tssr106872 11 11689763 to 11689769 6 - TSS region transcription start site region 106872
Tssr100365 11 11689944 to 11689947 3 + TSS region transcription start site region 100365
Tssr100366 11 11690078 to 11690079 1 + TSS region transcription start site region 100366
Tssr100367 11 11690082 to 11690103 21 + TSS region transcription start site region 100367
Tssr100368 11 11690114 to 11690135 21 + TSS region transcription start site region 100368
Tssr100369 11 11690137 to 11690184 47 + TSS region transcription start site region 100369
Tssr100370 11 11690185 to 11690197 12 + TSS region transcription start site region 100370
Tssr100371 11 11690202 to 11690213 11 + TSS region transcription start site region 100371
Tssr100372 11 11690267 to 11690280 13 + TSS region transcription start site region 100372
Tssr100373 11 11690291 to 11690312 21 + TSS region transcription start site region 100373
Tssr100374 11 11690313 to 11690329 16 + TSS region transcription start site region 100374
Tssr100375 11 11690408 to 11690421 13 + TSS region transcription start site region 100375
Tssr100376 11 11690449 to 11690468 19 + TSS region transcription start site region 100376
Tssr100377 11 11690833 to 11690848 15 + TSS region transcription start site region 100377
Tssr100378 11 11692003 to 11692009 6 + TSS region transcription start site region 100378
BC028789 11 11692607 to 11694765 2158 unclassified gene cDNA sequence BC028789
Tssr100379 11 11692837 to 11692846 9 + TSS region transcription start site region 100379
Tssr106873 11 11694269 to 11694284 15 - TSS region transcription start site region 106873
Gm12000 11 11695133 to 11696439 1306 - antisense lncRNA gene predicted gene 12000
Tssr106874 11 11699529 to 11699536 7 - TSS region transcription start site region 106874
Tssr3429 11 11699547 to 11699563 16 - TSS region transcription start site region 3429
Tssr100380 11 11701642 to 11701644 2 + TSS region transcription start site region 100380
Tssr100381 11 11719762 to 11719776 14 + TSS region transcription start site region 100381
Tssr106875 11 11725577 to 11725597 20 - TSS region transcription start site region 106875
Tssr100382 11 11741843 to 11741858 15 + TSS region transcription start site region 100382
Tssr100383 11 11744127 to 11744130 3 + TSS region transcription start site region 100383
Tssr100384 11 11765077 to 11765082 5 + TSS region transcription start site region 100384
Cpgi2584 11 11769135 to 11769614 479 CpG island CpG island 2584
Tssr100385 11 11769183 to 11769185 2 + TSS region transcription start site region 100385
Tssr100386 11 11769553 to 11769565 12 + TSS region transcription start site region 100386
Tssr106876 11 11769846 to 11769857 11 - TSS region transcription start site region 106876
Tssr106877 11 11769924 to 11769939 15 - TSS region transcription start site region 106877
Tssr100387 11 11771444 to 11771457 13 + TSS region transcription start site region 100387
Fignl1 11 11800288 to 11808995 8707 - protein coding gene fidgetin-like 1
Cpgi2585 11 11808544 to 11809397 853 CpG island CpG island 2585
Tssr106878 11 11808923 to 11808967 44 - TSS region transcription start site region 106878
Tssr100388 11 11809074 to 11809088 14 + TSS region transcription start site region 100388
Tssr100389 11 11809090 to 11809103 13 + TSS region transcription start site region 100389
Tssr100390 11 11809519 to 11809526 7 + TSS region transcription start site region 100390
Tssr100391 11 11809805 to 11809808 3 + TSS region transcription start site region 100391
Ddc 11 11814101 to 11898144 84043 - protein coding gene dopa decarboxylase
Tssr106879 11 11821569 to 11821571 2 - TSS region transcription start site region 106879
Tssr100392 11 11821825 to 11821847 22 + TSS region transcription start site region 100392
Tssr106880 11 11822946 to 11822963 17 - TSS region transcription start site region 106880
Tssr100393 11 11829397 to 11829410 13 + TSS region transcription start site region 100393
Tssr106881 11 11836212 to 11836231 19 - TSS region transcription start site region 106881
Tssr106882 11 11836259 to 11836276 17 - TSS region transcription start site region 106882
Tssr106883 11 11853551 to 11853563 12 - TSS region transcription start site region 106883
Tssr106884 11 11853587 to 11853601 14 - TSS region transcription start site region 106884
1700042O10Rik 11 11868123 to 11885321 17198 + antisense lncRNA gene RIKEN cDNA 1700042O10 gene
Tssr106885 11 11873214 to 11873265 51 - TSS region transcription start site region 106885