Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:11498458-12368498

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150 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Spata48 11 11463247 to 11515192 51945 + protein coding gene spermatogenesis associated 48
Tssr106866 11 11519450 to 11519457 7 - TSS region transcription start site region 106866
Tssr100348 11 11522213 to 11522251 38 + TSS region transcription start site region 100348
Gm29945 11 11552098 to 11558891 6793 - lncRNA gene predicted gene, 29945
Tssr100349 11 11557388 to 11557398 10 + TSS region transcription start site region 100349
Tssr100350 11 11557401 to 11557431 30 + TSS region transcription start site region 100350
Gm11998 11 11557421 to 11579460 22039 + antisense lncRNA gene predicted gene 11998
Tssr100351 11 11557932 to 11557943 11 + TSS region transcription start site region 100351
Tssr100352 11 11558007 to 11558026 19 + TSS region transcription start site region 100352
Tssr106867 11 11565310 to 11565315 5 - TSS region transcription start site region 106867
4930512M02Rik 11 11589223 to 11627835 38612 - protein coding gene RIKEN cDNA 4930512M02 gene
Tssr100353 11 11641101 to 11641108 7 + TSS region transcription start site region 100353
Gm11999 11 11642203 to 11685400 43197 - lncRNA gene predicted gene 11999
Tssr106868 11 11657226 to 11657262 36 - TSS region transcription start site region 106868
Tssr100354 11 11667768 to 11667791 23 + TSS region transcription start site region 100354
Tssr106869 11 11675214 to 11675221 7 - TSS region transcription start site region 106869
Cpgi2583 11 11684583 to 11686691 2108 CpG island CpG island 2583
Tssr100355 11 11684950 to 11684955 5 + TSS region transcription start site region 100355
Tssr100356 11 11684967 to 11685027 60 + TSS region transcription start site region 100356
Ikzf1 11 11685003 to 11772926 87923 + protein coding gene IKAROS family zinc finger 1
Tssr100357 11 11685542 to 11685553 11 + TSS region transcription start site region 100357
Tssr106870 11 11685624 to 11685655 31 - TSS region transcription start site region 106870
Tssr100358 11 11685675 to 11685742 67 + TSS region transcription start site region 100358
Tssr3428 11 11685906 to 11685907 1 + TSS region transcription start site region 3428
Tssr100359 11 11685909 to 11685947 38 + TSS region transcription start site region 100359
Tssr100360 11 11686215 to 11686282 67 + TSS region transcription start site region 100360
Tssr100361 11 11686297 to 11686322 25 + TSS region transcription start site region 100361
Tssr100362 11 11686398 to 11686403 5 + TSS region transcription start site region 100362
Tssr106871 11 11686705 to 11686736 31 - TSS region transcription start site region 106871
Tssr100363 11 11687717 to 11687732 15 + TSS region transcription start site region 100363
Tssr100364 11 11687747 to 11687756 9 + TSS region transcription start site region 100364
Tssr106872 11 11689763 to 11689769 6 - TSS region transcription start site region 106872
Tssr100365 11 11689944 to 11689947 3 + TSS region transcription start site region 100365
Tssr100366 11 11690078 to 11690079 1 + TSS region transcription start site region 100366
Tssr100367 11 11690082 to 11690103 21 + TSS region transcription start site region 100367
Tssr100368 11 11690114 to 11690135 21 + TSS region transcription start site region 100368
Tssr100369 11 11690137 to 11690184 47 + TSS region transcription start site region 100369
Tssr100370 11 11690185 to 11690197 12 + TSS region transcription start site region 100370
Tssr100371 11 11690202 to 11690213 11 + TSS region transcription start site region 100371
Tssr100372 11 11690267 to 11690280 13 + TSS region transcription start site region 100372
Tssr100373 11 11690291 to 11690312 21 + TSS region transcription start site region 100373
Tssr100374 11 11690313 to 11690329 16 + TSS region transcription start site region 100374
Tssr100375 11 11690408 to 11690421 13 + TSS region transcription start site region 100375
Tssr100376 11 11690449 to 11690468 19 + TSS region transcription start site region 100376
Tssr100377 11 11690833 to 11690848 15 + TSS region transcription start site region 100377
Tssr100378 11 11692003 to 11692009 6 + TSS region transcription start site region 100378
BC028789 11 11692607 to 11694765 2158 unclassified gene cDNA sequence BC028789
Tssr100379 11 11692837 to 11692846 9 + TSS region transcription start site region 100379
Tssr106873 11 11694269 to 11694284 15 - TSS region transcription start site region 106873
Gm12000 11 11695133 to 11696439 1306 - antisense lncRNA gene predicted gene 12000
Tssr106874 11 11699529 to 11699536 7 - TSS region transcription start site region 106874
Tssr3429 11 11699547 to 11699563 16 - TSS region transcription start site region 3429
Tssr100380 11 11701642 to 11701644 2 + TSS region transcription start site region 100380
Tssr100381 11 11719762 to 11719776 14 + TSS region transcription start site region 100381
Tssr106875 11 11725577 to 11725597 20 - TSS region transcription start site region 106875
Tssr100382 11 11741843 to 11741858 15 + TSS region transcription start site region 100382
Tssr100383 11 11744127 to 11744130 3 + TSS region transcription start site region 100383
Tssr100384 11 11765077 to 11765082 5 + TSS region transcription start site region 100384
Cpgi2584 11 11769135 to 11769614 479 CpG island CpG island 2584
Tssr100385 11 11769183 to 11769185 2 + TSS region transcription start site region 100385
Tssr100386 11 11769553 to 11769565 12 + TSS region transcription start site region 100386
Tssr106876 11 11769846 to 11769857 11 - TSS region transcription start site region 106876
Tssr106877 11 11769924 to 11769939 15 - TSS region transcription start site region 106877
Tssr100387 11 11771444 to 11771457 13 + TSS region transcription start site region 100387
Fignl1 11 11800288 to 11808995 8707 - protein coding gene fidgetin-like 1
Cpgi2585 11 11808544 to 11809397 853 CpG island CpG island 2585
Tssr106878 11 11808923 to 11808967 44 - TSS region transcription start site region 106878
Tssr100388 11 11809074 to 11809088 14 + TSS region transcription start site region 100388
Tssr100389 11 11809090 to 11809103 13 + TSS region transcription start site region 100389
Tssr100390 11 11809519 to 11809526 7 + TSS region transcription start site region 100390
Tssr100391 11 11809805 to 11809808 3 + TSS region transcription start site region 100391
Ddc 11 11814101 to 11898144 84043 - protein coding gene dopa decarboxylase
Tssr106879 11 11821569 to 11821571 2 - TSS region transcription start site region 106879
Tssr100392 11 11821825 to 11821847 22 + TSS region transcription start site region 100392
Tssr106880 11 11822946 to 11822963 17 - TSS region transcription start site region 106880
Tssr100393 11 11829397 to 11829410 13 + TSS region transcription start site region 100393
Tssr106881 11 11836212 to 11836231 19 - TSS region transcription start site region 106881
Tssr106882 11 11836259 to 11836276 17 - TSS region transcription start site region 106882
Tssr106883 11 11853551 to 11853563 12 - TSS region transcription start site region 106883
Tssr106884 11 11853587 to 11853601 14 - TSS region transcription start site region 106884
1700042O10Rik 11 11868123 to 11885321 17198 + antisense lncRNA gene RIKEN cDNA 1700042O10 gene
Tssr106885 11 11873214 to 11873265 51 - TSS region transcription start site region 106885
Tssr106886 11 11881137 to 11881147 10 - TSS region transcription start site region 106886
Tssr106887 11 11882292 to 11882295 3 - TSS region transcription start site region 106887
Tssr106888 11 11889680 to 11889684 4 - TSS region transcription start site region 106888
Tssr106889 11 11890368 to 11890379 11 - TSS region transcription start site region 106889
Tssr106890 11 11890394 to 11890407 13 - TSS region transcription start site region 106890
Tssr106891 11 11897701 to 11897708 7 - TSS region transcription start site region 106891
Tssr106892 11 11898062 to 11898080 18 - TSS region transcription start site region 106892
Tssr106893 11 11898092 to 11898150 58 - TSS region transcription start site region 106893
Gm25058 11 11913621 to 11913748 127 - snoRNA gene predicted gene, 25058
Grb10 11 11930499 to 12037422 106923 - protein coding gene growth factor receptor bound protein 10
Tssr106894 11 11931634 to 11931645 11 - TSS region transcription start site region 106894
Tssr106895 11 11931697 to 11931710 13 - TSS region transcription start site region 106895
Tssr106896 11 11931722 to 11931735 13 - TSS region transcription start site region 106896
Tssr106897 11 11931760 to 11931844 84 - TSS region transcription start site region 106897
Tssr106898 11 11931880 to 11931897 17 - TSS region transcription start site region 106898
Tssr106899 11 11932253 to 11932264 11 - TSS region transcription start site region 106899
Tssr106900 11 11932563 to 11932572 9 - TSS region transcription start site region 106900
Tssr106901 11 11932843 to 11932855 12 - TSS region transcription start site region 106901
Tssr106902 11 11932887 to 11932903 16 - TSS region transcription start site region 106902
Tssr106903 11 11933372 to 11933406 34 - TSS region transcription start site region 106903
Tssr106904 11 11933458 to 11933498 40 - TSS region transcription start site region 106904
Tssr106905 11 11944906 to 11944921 15 - TSS region transcription start site region 106905
Tssr106906 11 11945540 to 11945559 19 - TSS region transcription start site region 106906
Tssr106907 11 11957048 to 11957086 38 - TSS region transcription start site region 106907
2610104F20Rik 11 11958406 to 11967116 8710 - lncRNA gene RIKEN cDNA 2610104F20 gene
Tssr106908 11 11962026 to 11962037 11 - TSS region transcription start site region 106908
Tssr106909 11 11967558 to 11967609 51 - TSS region transcription start site region 106909
Tssr106910 11 11970540 to 11970554 14 - TSS region transcription start site region 106910
Tssr106911 11 12004318 to 12004322 4 - TSS region transcription start site region 106911
Tssr106912 11 12009492 to 12009495 3 - TSS region transcription start site region 106912
Cpgi2586 11 12025419 to 12027039 1620 CpG island CpG island 2586
Tssr106913 11 12025849 to 12025883 34 - TSS region transcription start site region 106913
Tssr106914 11 12026237 to 12026249 12 - TSS region transcription start site region 106914
Tssr106915 11 12026772 to 12026823 51 - TSS region transcription start site region 106915
Tssr106916 11 12027958 to 12027973 15 - TSS region transcription start site region 106916
Tssr106917 11 12028908 to 12028911 3 - TSS region transcription start site region 106917
Tssr3430 11 12035990 to 12036008 18 - TSS region transcription start site region 3430
Cpgi2587 11 12036330 to 12038138 1808 CpG island CpG island 2587
Tssr106918 11 12037349 to 12037360 11 - TSS region transcription start site region 106918
Tssr106919 11 12037391 to 12037407 16 - TSS region transcription start site region 106919
Tssr100394 11 12037644 to 12037659 15 + TSS region transcription start site region 100394
Gm30423 11 12040686 to 12047122 6436 - lncRNA gene predicted gene, 30423
Tssr100395 11 12053934 to 12053938 4 + TSS region transcription start site region 100395
Gm24036 11 12054148 to 12054303 155 - snRNA gene predicted gene, 24036
Tssr106920 11 12054299 to 12054307 8 - TSS region transcription start site region 106920
Gm12001 11 12125090 to 12127998 2908 - pseudogene predicted gene 12001
Cobl 11 12236676 to 12464960 228284 - protein coding gene cordon-bleu WH2 repeat
Gm39581 11 12242309 to 12263293 20984 + lncRNA gene predicted gene, 39581
Tssr106921 11 12309732 to 12309746 14 - TSS region transcription start site region 106921
Tssr106922 11 12309760 to 12309771 11 - TSS region transcription start site region 106922
Gm12002 11 12313365 to 12346088 32723 + antisense lncRNA gene predicted gene 12002
Tssr100396 11 12314509 to 12314529 20 + TSS region transcription start site region 100396
Eae44 11 12318637 to 40060013 27741376 QTL experimental allergic encephalomyelitis susceptibility 44
Epfq4 11 12318637 to 68609504 56290867 QTL epididymal fat pad weight QTL 4
Kidpq1 11 12318637 to 68609504 56290867 QTL kidney weight percentage QTL 1
Scfq3 11 12318637 to 68609504 56290867 QTL subcutaneous fat pad weight QTL 3
W6q3 11 12318637 to 68609504 56290867 QTL weight 6 weeks QTL 3
Lmrq4 11 12318637 to 69794121 57475484 QTL Leishmania major resistance QTL 4
Egq4 11 12318637 to 68609504 56290867 QTL early growth QTL 4
Tailq1 11 12318637 to 68609504 56290867 QTL tail length QTL 1
W3q4 11 12318637 to 68609504 56290867 QTL weight 3 weeks QTL 4
Lgaq1 11 12318637 to 68609504 56290867 QTL late growth adjusted QTL 1
Lgq1 11 12318637 to 68609504 56290867 QTL late growth QTL 1
Orq2 11 12318637 to 68609504 56290867 QTL ovulation rate QTL 2
D11Mit2 11 12318637 to 12318743 106 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 2
W10q2 11 12318637 to 68609504 56290867 QTL weight 10 weeks QTL 2
Tssr106923 11 12354027 to 12354032 5 - TSS region transcription start site region 106923
Lvrq7 11 118131898 to 12318637 -105813261 QTL liver weight QTL 7