Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:113681429-114501443

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93 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Bolt 11 102894911 to 113919427 11024516 heritable phenotypic marker lightning bolt tail
Fam104a 11 113661319 to 113684155 22836 - protein coding gene family with sequence similarity 104, member A
Cpgi4080 11 113683176 to 113684933 1757 CpG island CpG island 4080
Tssr111632 11 113683247 to 113683275 28 - TSS region transcription start site region 111632
Tssr111633 11 113683281 to 113683312 31 - TSS region transcription start site region 111633
Tssr105755 11 113683434 to 113683471 37 + TSS region transcription start site region 105755
Tssr111634 11 113683877 to 113683886 9 - TSS region transcription start site region 111634
Tssr111635 11 113683929 to 113683957 28 - TSS region transcription start site region 111635
Tssr111636 11 113683976 to 113684132 156 - TSS region transcription start site region 111636
Tssr105756 11 113684021 to 113684026 5 + TSS region transcription start site region 105756
4930539H15Rik 11 113684023 to 113684315 292 unclassified gene RIKEN cDNA 4930539H15 gene
Tssr111637 11 113684160 to 113684186 26 - TSS region transcription start site region 111637
Tssr111638 11 113684188 to 113684198 10 - TSS region transcription start site region 111638
D11Wsu47e 11 113684412 to 113694647 10235 + protein coding gene DNA segment, Chr 11, Wayne State University 47, expressed
Tssr105757 11 113684425 to 113684480 55 + TSS region transcription start site region 105757
Tssr105758 11 113684487 to 113684506 19 + TSS region transcription start site region 105758
Tssr105759 11 113684510 to 113684514 4 + TSS region transcription start site region 105759
Tssr111639 11 113684510 to 113684520 10 - TSS region transcription start site region 111639
Tssr3722 11 113684518 to 113684525 7 + TSS region transcription start site region 3722
Tssr105760 11 113684533 to 113684551 18 + TSS region transcription start site region 105760
Tssr105761 11 113684610 to 113684621 11 + TSS region transcription start site region 105761
Tssr105762 11 113687098 to 113687114 16 + TSS region transcription start site region 105762
Tssr105763 11 113687128 to 113687153 25 + TSS region transcription start site region 105763
Tssr105764 11 113687763 to 113687767 4 + TSS region transcription start site region 105764
Cpsf4l 11 113698172 to 113710017 11845 - protein coding gene cleavage and polyadenylation specific factor 4-like
Tssr105765 11 113700200 to 113700206 6 + TSS region transcription start site region 105765
Tssr111640 11 113708952 to 113708972 20 - TSS region transcription start site region 111640
Tssr111641 11 113709521 to 113709528 7 - TSS region transcription start site region 111641
Tssr111642 11 113709653 to 113709690 37 - TSS region transcription start site region 111642
Tssr111643 11 113710012 to 113710023 11 - TSS region transcription start site region 111643
Tssr111644 11 113710053 to 113710061 8 - TSS region transcription start site region 111644
Tssr111645 11 113710098 to 113710105 7 - TSS region transcription start site region 111645
Tssr111646 11 113710108 to 113710113 5 - TSS region transcription start site region 111646
Cdc42ep4 11 113726850 to 113751881 25031 - protein coding gene CDC42 effector protein (Rho GTPase binding) 4
Cpgi4081 11 113750629 to 113752197 1568 CpG island CpG island 4081
Tssr111647 11 113750783 to 113750847 64 - TSS region transcription start site region 111647
Tssr111648 11 113750881 to 113750901 20 - TSS region transcription start site region 111648
Tssr111649 11 113751251 to 113751294 43 - TSS region transcription start site region 111649
Tssr111650 11 113751309 to 113751327 18 - TSS region transcription start site region 111650
Tssr111651 11 113751784 to 113751806 22 - TSS region transcription start site region 111651
Tssr111652 11 113751813 to 113751849 36 - TSS region transcription start site region 111652
Tssr105766 11 113751976 to 113751997 21 + TSS region transcription start site region 105766
Tssr111653 11 113752314 to 113752349 35 - TSS region transcription start site region 111653
Gm11736 11 113756702 to 113757206 504 + pseudogene predicted gene 11736
Tssr111654 11 113771513 to 113771516 3 - TSS region transcription start site region 111654
Sdk2 11 113776374 to 114067046 290672 - protein coding gene sidekick cell adhesion molecule 2
Gm39468 11 113785851 to 113787695 1844 + lncRNA gene predicted gene, 39468
Tssr105767 11 113786159 to 113786204 45 + TSS region transcription start site region 105767
Tssr111655 11 113797472 to 113797476 4 - TSS region transcription start site region 111655
Tssr111656 11 113803642 to 113803692 50 - TSS region transcription start site region 111656
Cpgi4082 11 113828352 to 113828550 198 CpG island CpG island 4082
Cpgi4083 11 113902955 to 113903160 205 CpG island CpG island 4083
D11Mit128 11 113919310 to 113919427 117 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 128
Nidd4 11 113919310 to 113919427 117 QTL non-insulin-dependent diabetes mellitus 4
Tssr105768 11 113933987 to 113934001 14 + TSS region transcription start site region 105768
Cpgi4084 11 113951833 to 113952000 167 CpG island CpG island 4084
Cpgi4085 11 114064837 to 114067609 2772 CpG island CpG island 4085
Tssr111657 11 114066174 to 114066188 14 - TSS region transcription start site region 111657
Tssr111658 11 114066986 to 114067064 78 - TSS region transcription start site region 111658
Tssr105769 11 114091404 to 114091413 9 + TSS region transcription start site region 105769
Tssr105770 11 114091429 to 114091443 14 + TSS region transcription start site region 105770
Tssr105771 11 114091474 to 114091515 41 + TSS region transcription start site region 105771
1700025D23Rik 11 114091803 to 114095325 3522 + lincRNA gene RIKEN cDNA 1700025D23 gene
D11Mit167 11 114093917 to 114094064 147 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 167
Cpgi4086 11 114168322 to 114168474 152 CpG island CpG island 4086
D11Mit302 11 114174336 to 114174450 114 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 302
1700001J04Rik 11 114185438 to 114186761 1323 - antisense lncRNA gene RIKEN cDNA 1700001J04 gene
Tssr111659 11 114185647 to 114185654 7 - TSS region transcription start site region 111659
Tssr111660 11 114186744 to 114186756 12 - TSS region transcription start site region 111660
1700092K14Rik 11 114198258 to 114199199 941 + lncRNA gene RIKEN cDNA 1700092K14 gene
Cpgi4087 11 114202407 to 114202806 399 CpG island CpG island 4087
Tssr111661 11 114217601 to 114217606 5 - TSS region transcription start site region 111661
Tssr105772 11 114217705 to 114217748 43 + TSS region transcription start site region 105772
Gm11690 11 114219239 to 114238502 19263 - lincRNA gene predicted gene 11690
D11Mit255 11 114223504 to 114223688 184 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 255
Tssr111662 11 114237138 to 114237153 15 - TSS region transcription start site region 111662
Tssr111663 11 114237207 to 114237213 6 - TSS region transcription start site region 111663
Tssr111664 11 114248322 to 114248347 25 - TSS region transcription start site region 111664
Gm11691 11 114251843 to 114253127 1284 + lincRNA gene predicted gene 11691
Tssr105773 11 114251876 to 114251887 11 + TSS region transcription start site region 105773
D11Dcr28 11 114267020 to 114267130 110 DNA segment DNA Segment, Chr 11, Derry C. Roopenian 28
D11Mit253 11 114267052 to 114267131 79 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 253
Tmc1m2 11 114267131 to 56973201 -57293930 QTL Tmc1 modifier 2
Cpgi4088 11 114277778 to 114278086 308 CpG island CpG island 4088
Gm31318 11 114303822 to 114310026 6204 + lncRNA gene predicted gene, 31318
D11Mit292 11 114351743 to 114351988 245 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 292
Gm11692 11 114357129 to 114358261 1132 + pseudogene predicted gene 11692
4932435O22Rik 11 114413405 to 114448860 35455 - lincRNA gene RIKEN cDNA 4932435O22 gene
Cpgi4089 11 114423391 to 114423857 466 CpG island CpG island 4089
Gm31399 11 114423752 to 114434189 10437 + lncRNA gene predicted gene, 31399
Cpgi4090 11 114472488 to 114472728 240 CpG island CpG island 4090
Gm39471 11 114479909 to 114484619 4710 - lncRNA gene predicted gene, 39471
Gm39472 11 114489206 to 114504225 15019 + lncRNA gene predicted gene, 39472