Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:11252210-11672243

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33 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Vwc2 11 11114223 to 11268931 154708 + protein coding gene von Willebrand factor C domain containing 2
Gm39578 11 11251022 to 11254390 3368 - lncRNA gene predicted gene, 39578
Zpbp 11 11279626 to 11462408 182782 - protein coding gene zona pellucida binding protein
Gm12598 11 11312433 to 11313262 829 + pseudogene predicted gene 12598
Tssr106860 11 11404926 to 11404930 4 - TSS region transcription start site region 106860
Gm26458 11 11427385 to 11427512 127 - snoRNA gene predicted gene, 26458
Gm12599 11 11436984 to 11437775 791 + pseudogene predicted gene 12599
Tssr106861 11 11451200 to 11451204 4 - TSS region transcription start site region 106861
Cpgi2582 11 11461737 to 11462549 812 CpG island CpG island 2582
Tssr100344 11 11462079 to 11462103 24 + TSS region transcription start site region 100344
Tssr3427 11 11462202 to 11462207 5 - TSS region transcription start site region 3427
Tssr106862 11 11462210 to 11462243 33 - TSS region transcription start site region 106862
Tssr106863 11 11462250 to 11462272 22 - TSS region transcription start site region 106863
Tssr106864 11 11462415 to 11462426 11 - TSS region transcription start site region 106864
Tssr106865 11 11462436 to 11462446 10 - TSS region transcription start site region 106865
Tssr100345 11 11462490 to 11462528 38 + TSS region transcription start site region 100345
Spata48 11 11463247 to 11515192 51945 + protein coding gene spermatogenesis associated 48
Tssr100346 11 11464020 to 11464056 36 + TSS region transcription start site region 100346
Tssr100347 11 11484553 to 11484568 15 + TSS region transcription start site region 100347
Tssr106866 11 11519450 to 11519457 7 - TSS region transcription start site region 106866
Tssr100348 11 11522213 to 11522251 38 + TSS region transcription start site region 100348
Gm29945 11 11552098 to 11558891 6793 - lncRNA gene predicted gene, 29945
Tssr100349 11 11557388 to 11557398 10 + TSS region transcription start site region 100349
Tssr100350 11 11557401 to 11557431 30 + TSS region transcription start site region 100350
Gm11998 11 11557421 to 11579460 22039 + antisense lncRNA gene predicted gene 11998
Tssr100351 11 11557932 to 11557943 11 + TSS region transcription start site region 100351
Tssr100352 11 11558007 to 11558026 19 + TSS region transcription start site region 100352
Tssr106867 11 11565310 to 11565315 5 - TSS region transcription start site region 106867
4930512M02Rik 11 11589223 to 11627835 38612 - protein coding gene RIKEN cDNA 4930512M02 gene
Tssr100353 11 11641101 to 11641108 7 + TSS region transcription start site region 100353
Gm11999 11 11642203 to 11685400 43197 - lncRNA gene predicted gene 11999
Tssr106868 11 11657226 to 11657262 36 - TSS region transcription start site region 106868
Tssr100354 11 11667768 to 11667791 23 + TSS region transcription start site region 100354