Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:111279457-114290512

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188 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pbd1 11 102453297 to 112493297 10040000 QTL peak bone density 1
Bolt 11 102894911 to 113919427 11024516 heritable phenotypic marker lightning bolt tail
D11Mit361 11 111407465 to 111407553 88 DNA segment DNA Segment, Chr 11 Massachusetts Institute of Technology 361
Tssr111607 11 111427998 to 111428019 21 - TSS region transcription start site region 111607
D11Mit202 11 111443224 to 111443422 198 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 202
D11Dcr24 11 111443320 to 111443420 100 DNA segment DNA Segment, Chr 11, Derry C. Roopenian 24
Gm30158 11 111511565 to 111512514 949 - lncRNA gene predicted gene, 30158
Tssr111608 11 111512454 to 111512473 19 - TSS region transcription start site region 111608
Gm11676 11 111612817 to 111613306 489 - pseudogene predicted gene 11676
Gm30219 11 111637255 to 111659013 21758 - lncRNA gene predicted gene, 30219
Gm11677 11 111724648 to 111725624 976 - pseudogene predicted gene 11677
Gm11674 11 111796347 to 111800876 4529 - lincRNA gene predicted gene 11674
Tssr111609 11 111800870 to 111800880 10 - TSS region transcription start site region 111609
Gm30337 11 111802405 to 111839753 37348 + lncRNA gene predicted gene, 30337
Tssr3716 11 111814364 to 111814368 4 + TSS region transcription start site region 3716
D11Mit11 11 111948715 to 111948949 234 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 11
Gm11679 11 112042800 to 112043578 778 - pseudogene predicted gene 11679
Gm11680 11 112107438 to 112132196 24758 + lincRNA gene predicted gene 11680
Tssr111610 11 112131781 to 112131782 1 - TSS region transcription start site region 111610
Gm39461 11 112156600 to 112174941 18341 + lncRNA gene predicted gene, 39461
4930401C12Rik 11 112156893 to 112157350 457 unclassified gene RIKEN cDNA 4930401C12 gene
Tssr111611 11 112157330 to 112157361 31 - TSS region transcription start site region 111611
D11Ertd4e 11 112187531 to 112187745 214 DNA segment DNA segment, Chr 11, ERATO Doi 4, expressed
D11Dcr36 11 112262401 to 112262498 97 DNA segment DNA Segment, Chr 11, Derry C. Roopenian 36
D11Dcr37 11 112405931 to 112406029 98 DNA segment DNA Segment, Chr 11, Derry C. Roopenian 37
D11Mit301 11 112411778 to 112411890 112 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 301
D11Dcr25 11 112411786 to 112411886 100 DNA segment DNA Segment, Chr 11, Derry C. Roopenian 25
Tssr3717 11 112469203 to 112469204 1 - TSS region transcription start site region 3717
D11Mit184 11 112493147 to 112493297 150 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 184
Alcp18 11 112513139 to 112513276 137 QTL alcohol preference locus 18, male specific
Alcp20 11 112513139 to 112513276 137 QTL alcohol preference locus 20, female specific
D11Mit61 11 112513139 to 112513276 137 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 61
D11Dcr26 11 112513150 to 112513254 104 DNA segment DNA Segment, Chr 11, Derry C. Roopenian 26
Tssr111612 11 112515628 to 112515651 23 - TSS region transcription start site region 111612
D11Mit101 11 112653527 to 112653728 201 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 101
Heal26 11 112653728 to 93048547 -19605181 QTL wound healing/regeneration 26
BC006965 11 112663927 to 112711356 47429 - lncRNA gene cDNA sequence BC006965
Tssr111613 11 112711350 to 112711367 17 - TSS region transcription start site region 111613
Tssr111614 11 112711469 to 112711479 10 - TSS region transcription start site region 111614
Tssr111615 11 112774353 to 112774362 9 - TSS region transcription start site region 111615
D11Mit291 11 112779076 to 112779167 91 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 291
Cpgi4071 11 112781229 to 112783141 1912 CpG island CpG island 4071
Tssr105744 11 112782182 to 112782248 66 + TSS region transcription start site region 105744
Sox9 11 112782224 to 112787760 5536 + protein coding gene SRY (sex determining region Y)-box 9
Cpgi4072 11 112783821 to 112784242 421 CpG island CpG island 4072
Cpgi4073 11 112784457 to 112785512 1055 CpG island CpG island 4073
Tssr3718 11 112784895 to 112784909 14 + TSS region transcription start site region 3718
Tssr3719 11 112785282 to 112785293 11 + TSS region transcription start site region 3719
Tssr105745 11 112786867 to 112786877 10 + TSS region transcription start site region 105745
Tssr105746 11 112787426 to 112787430 4 + TSS region transcription start site region 105746
Gm11681 11 112792731 to 112799008 6277 - lincRNA gene predicted gene 11681
Gm30562 11 112805916 to 112810575 4659 - lncRNA gene predicted gene, 30562
Tssr105747 11 112806598 to 112806602 4 + TSS region transcription start site region 105747
1700012H19Rik 11 112822965 to 112825128 2163 - lncRNA gene RIKEN cDNA 1700012H19 gene
Tssr111616 11 112825095 to 112825139 44 - TSS region transcription start site region 111616
4933434M16Rik 11 112825154 to 112832469 7315 + lincRNA gene RIKEN cDNA 4933434M16 gene
Tssr105748 11 112825163 to 112825190 27 + TSS region transcription start site region 105748
Gm46301 11 112859281 to 112894387 35106 + lncRNA gene predicted gene, 46301
2610035D17Rik 11 113043906 to 113201838 157932 - lincRNA gene RIKEN cDNA 2610035D17 gene
Tssr105749 11 113061235 to 113061273 38 + TSS region transcription start site region 105749
Tssr111617 11 113063199 to 113063208 9 - TSS region transcription start site region 111617
Tssr3720 11 113094297 to 113094310 13 + TSS region transcription start site region 3720
D11Mit42.1 11 113124742 to 113124870 128 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 42.1
D11Mit42 11 113124852 to 113124967 115 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 42
Gm39467 11 113132826 to 113134232 1406 - lncRNA gene predicted gene, 39467
Tssr111618 11 113155140 to 113155157 17 - TSS region transcription start site region 111618
D11Mit254 11 113162866 to 113163140 274 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 254
Cpgi4074 11 113165050 to 113165371 321 CpG island CpG island 4074
D11Mit12 11 113167045 to 113167183 138 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 12
Inf1 11 113167183 to 44739211 -68427972 QTL acute ozone induced inflammation
Tssr111619 11 113171857 to 113171872 15 - TSS region transcription start site region 111619
Tssr111620 11 113171942 to 113171959 17 - TSS region transcription start site region 111620
Tssr111621 11 113172951 to 113172958 7 - TSS region transcription start site region 111621
Tssr111622 11 113172978 to 113173041 63 - TSS region transcription start site region 111622
Tssr3721 11 113180845 to 113180848 3 + TSS region transcription start site region 3721
Tssr111623 11 113197486 to 113197490 4 - TSS region transcription start site region 111623
Cpgi4075 11 113200979 to 113201936 957 CpG island CpG island 4075
Tssr111624 11 113201834 to 113201847 13 - TSS region transcription start site region 111624
4732490B19Rik 11 113203315 to 113209669 6354 - lincRNA gene RIKEN cDNA 4732490B19 gene
Tssr111625 11 113209633 to 113209654 21 - TSS region transcription start site region 111625
Gm39505 11 113217679 to 113219280 1601 - lncRNA gene predicted gene, 39505
Slc39a11 11 113244853 to 113650079 405226 - protein coding gene solute carrier family 39 (metal ion transporter), member 11
D11Mit168 11 113246848 to 113246994 146 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 168
Cd8mts4 11 113246848 to 113246994 146 QTL CD8 memory T cell subset 4
D11Dcr27 11 113246851 to 113246958 107 DNA segment DNA Segment, Chr 11, Derry C. Roopenian 27
Tssr105750 11 113387622 to 113387624 2 + TSS region transcription start site region 105750
Gm42094 11 113397657 to 113400704 3047 + lncRNA gene predicted gene, 42094
Tssr111626 11 113444689 to 113444716 27 - TSS region transcription start site region 111626
Tssr111627 11 113464350 to 113464352 2 - TSS region transcription start site region 111627
Gm16487 11 113467977 to 113472014 4037 + pseudogene predicted gene 16487
Tssr111628 11 113514540 to 113514571 31 - TSS region transcription start site region 111628
Cpgi4076 11 113565604 to 113565942 338 CpG island CpG island 4076
Tssr111629 11 113565740 to 113565792 52 - TSS region transcription start site region 111629
Cpgi4077 11 113618599 to 113619969 1370 CpG island CpG island 4077
Tssr105751 11 113619318 to 113619346 28 + TSS region transcription start site region 105751
Tssr105752 11 113619380 to 113619385 5 + TSS region transcription start site region 105752
Sstr2 11 113619481 to 113625895 6414 + protein coding gene somatostatin receptor 2
Cpgi4078 11 113648249 to 113648442 193 CpG island CpG island 4078
Cpgi4079 11 113648971 to 113650370 1399 CpG island CpG island 4079
Cog1 11 113649169 to 113667054 17885 + protein coding gene component of oligomeric golgi complex 1
Tssr105753 11 113649519 to 113649560 41 + TSS region transcription start site region 105753
Tssr105754 11 113649577 to 113649584 7 + TSS region transcription start site region 105754
Tssr111630 11 113650041 to 113650100 59 - TSS region transcription start site region 111630
Fam104a 11 113661319 to 113684155 22836 - protein coding gene family with sequence similarity 104, member A
Tssr111631 11 113676115 to 113676123 8 - TSS region transcription start site region 111631
Gm11693 11 113678530 to 113679331 801 + pseudogene predicted gene 11693
Cpgi4080 11 113683176 to 113684933 1757 CpG island CpG island 4080
Tssr111632 11 113683247 to 113683275 28 - TSS region transcription start site region 111632
Tssr111633 11 113683281 to 113683312 31 - TSS region transcription start site region 111633
Tssr105755 11 113683434 to 113683471 37 + TSS region transcription start site region 105755
Tssr111634 11 113683877 to 113683886 9 - TSS region transcription start site region 111634
Tssr111635 11 113683929 to 113683957 28 - TSS region transcription start site region 111635
Tssr111636 11 113683976 to 113684132 156 - TSS region transcription start site region 111636
Tssr105756 11 113684021 to 113684026 5 + TSS region transcription start site region 105756
4930539H15Rik 11 113684023 to 113684315 292 unclassified gene RIKEN cDNA 4930539H15 gene
Tssr111637 11 113684160 to 113684186 26 - TSS region transcription start site region 111637
Tssr111638 11 113684188 to 113684198 10 - TSS region transcription start site region 111638
D11Wsu47e 11 113684412 to 113694647 10235 + protein coding gene DNA segment, Chr 11, Wayne State University 47, expressed
Tssr105757 11 113684425 to 113684480 55 + TSS region transcription start site region 105757
Tssr105758 11 113684487 to 113684506 19 + TSS region transcription start site region 105758
Tssr105759 11 113684510 to 113684514 4 + TSS region transcription start site region 105759
Tssr111639 11 113684510 to 113684520 10 - TSS region transcription start site region 111639
Tssr3722 11 113684518 to 113684525 7 + TSS region transcription start site region 3722
Tssr105760 11 113684533 to 113684551 18 + TSS region transcription start site region 105760
Tssr105761 11 113684610 to 113684621 11 + TSS region transcription start site region 105761
Tssr105762 11 113687098 to 113687114 16 + TSS region transcription start site region 105762
Tssr105763 11 113687128 to 113687153 25 + TSS region transcription start site region 105763
Tssr105764 11 113687763 to 113687767 4 + TSS region transcription start site region 105764
Cpsf4l 11 113698172 to 113710017 11845 - protein coding gene cleavage and polyadenylation specific factor 4-like
Tssr105765 11 113700200 to 113700206 6 + TSS region transcription start site region 105765
Tssr111640 11 113708952 to 113708972 20 - TSS region transcription start site region 111640
Tssr111641 11 113709521 to 113709528 7 - TSS region transcription start site region 111641
Tssr111642 11 113709653 to 113709690 37 - TSS region transcription start site region 111642
Tssr111643 11 113710012 to 113710023 11 - TSS region transcription start site region 111643
Tssr111644 11 113710053 to 113710061 8 - TSS region transcription start site region 111644
Tssr111645 11 113710098 to 113710105 7 - TSS region transcription start site region 111645
Tssr111646 11 113710108 to 113710113 5 - TSS region transcription start site region 111646
Cdc42ep4 11 113726850 to 113751881 25031 - protein coding gene CDC42 effector protein (Rho GTPase binding) 4
Cpgi4081 11 113750629 to 113752197 1568 CpG island CpG island 4081
Tssr111647 11 113750783 to 113750847 64 - TSS region transcription start site region 111647
Tssr111648 11 113750881 to 113750901 20 - TSS region transcription start site region 111648
Tssr111649 11 113751251 to 113751294 43 - TSS region transcription start site region 111649
Tssr111650 11 113751309 to 113751327 18 - TSS region transcription start site region 111650
Tssr111651 11 113751784 to 113751806 22 - TSS region transcription start site region 111651
Tssr111652 11 113751813 to 113751849 36 - TSS region transcription start site region 111652
Tssr105766 11 113751976 to 113751997 21 + TSS region transcription start site region 105766
Tssr111653 11 113752314 to 113752349 35 - TSS region transcription start site region 111653
Gm11736 11 113756702 to 113757206 504 + pseudogene predicted gene 11736
Tssr111654 11 113771513 to 113771516 3 - TSS region transcription start site region 111654
Sdk2 11 113776374 to 114067046 290672 - protein coding gene sidekick cell adhesion molecule 2
Gm39468 11 113785851 to 113787695 1844 + lncRNA gene predicted gene, 39468
Tssr105767 11 113786159 to 113786204 45 + TSS region transcription start site region 105767
Tssr111655 11 113797472 to 113797476 4 - TSS region transcription start site region 111655
Tssr111656 11 113803642 to 113803692 50 - TSS region transcription start site region 111656
Cpgi4082 11 113828352 to 113828550 198 CpG island CpG island 4082
Cpgi4083 11 113902955 to 113903160 205 CpG island CpG island 4083
D11Mit128 11 113919310 to 113919427 117 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 128
Nidd4 11 113919310 to 113919427 117 QTL non-insulin-dependent diabetes mellitus 4
Tssr105768 11 113933987 to 113934001 14 + TSS region transcription start site region 105768
Cpgi4084 11 113951833 to 113952000 167 CpG island CpG island 4084
Cpgi4085 11 114064837 to 114067609 2772 CpG island CpG island 4085
Tssr111657 11 114066174 to 114066188 14 - TSS region transcription start site region 111657
Tssr111658 11 114066986 to 114067064 78 - TSS region transcription start site region 111658
Tssr105769 11 114091404 to 114091413 9 + TSS region transcription start site region 105769
Tssr105770 11 114091429 to 114091443 14 + TSS region transcription start site region 105770
Tssr105771 11 114091474 to 114091515 41 + TSS region transcription start site region 105771
1700025D23Rik 11 114091803 to 114095325 3522 + lincRNA gene RIKEN cDNA 1700025D23 gene
D11Mit167 11 114093917 to 114094064 147 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 167
Cpgi4086 11 114168322 to 114168474 152 CpG island CpG island 4086
D11Mit302 11 114174336 to 114174450 114 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 302
1700001J04Rik 11 114185438 to 114186761 1323 - antisense lncRNA gene RIKEN cDNA 1700001J04 gene
Tssr111659 11 114185647 to 114185654 7 - TSS region transcription start site region 111659
Tssr111660 11 114186744 to 114186756 12 - TSS region transcription start site region 111660
1700092K14Rik 11 114198258 to 114199199 941 + lncRNA gene RIKEN cDNA 1700092K14 gene
Cpgi4087 11 114202407 to 114202806 399 CpG island CpG island 4087
Tssr111661 11 114217601 to 114217606 5 - TSS region transcription start site region 111661
Tssr105772 11 114217705 to 114217748 43 + TSS region transcription start site region 105772
Gm11690 11 114219239 to 114238502 19263 - lincRNA gene predicted gene 11690
D11Mit255 11 114223504 to 114223688 184 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 255
Tssr111662 11 114237138 to 114237153 15 - TSS region transcription start site region 111662
Tssr111663 11 114237207 to 114237213 6 - TSS region transcription start site region 111663
Tssr111664 11 114248322 to 114248347 25 - TSS region transcription start site region 111664
Gm11691 11 114251843 to 114253127 1284 + lincRNA gene predicted gene 11691
Tssr105773 11 114251876 to 114251887 11 + TSS region transcription start site region 105773
D11Dcr28 11 114267020 to 114267130 110 DNA segment DNA Segment, Chr 11, Derry C. Roopenian 28
D11Mit253 11 114267052 to 114267131 79 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 253
Tmc1m2 11 114267131 to 56973201 -57293930 QTL Tmc1 modifier 2
Cpgi4088 11 114277778 to 114278086 308 CpG island CpG island 4088