Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:110167054-111827062

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94 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Hmtb6 11 107725518 to 110629004 2903486 QTL hemostasis and thrombosis rebleeding time 6
Abca9 11 110100749 to 110168196 67447 - protein coding gene ATP-binding cassette, sub-family A (ABC1), member 9
Tssr111595 11 110168073 to 110168182 109 - TSS region transcription start site region 111595
Abca6 11 110176820 to 110251776 74956 - protein coding gene ATP-binding cassette, sub-family A (ABC1), member 6
Tssr105709 11 110180161 to 110180173 12 + TSS region transcription start site region 105709
Tssr105710 11 110180183 to 110180211 28 + TSS region transcription start site region 105710
Tssr105711 11 110180216 to 110180229 13 + TSS region transcription start site region 105711
Gm46299 11 110180251 to 110180827 576 + lncRNA gene predicted gene, 46299
Tssr111596 11 110190776 to 110190777 1 - TSS region transcription start site region 111596
Tssr111597 11 110241658 to 110241665 7 - TSS region transcription start site region 111597
Tssr111598 11 110251632 to 110251641 9 - TSS region transcription start site region 111598
Tssr111599 11 110251693 to 110251704 11 - TSS region transcription start site region 111599
Tssr111600 11 110251711 to 110251734 23 - TSS region transcription start site region 111600
Tssr111601 11 110251736 to 110251754 18 - TSS region transcription start site region 111601
Tssr111602 11 110252410 to 110252423 13 - TSS region transcription start site region 111602
Abca5 11 110269369 to 110337716 68347 - protein coding gene ATP-binding cassette, sub-family A (ABC1), member 5
Cpgi4063 11 110337013 to 110338132 1119 CpG island CpG island 4063
Tssr111603 11 110337612 to 110337704 92 - TSS region transcription start site region 111603
Gm39445 11 110337838 to 110340005 2167 + lncRNA gene predicted gene, 39445
El6 11 110338357 to 110338465 108 QTL epilepsy 6
D11Mit100 11 110338357 to 110338465 108 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 100
D11Dcr22 11 110338357 to 110338464 107 DNA segment DNA Segment, Chr 11, Derry C. Roopenian 22
D11Mit182 11 110375973 to 110376152 179 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 182
Cpgi4064 11 110379918 to 110380249 331 CpG island CpG island 4064
Cpgi4065 11 110396127 to 110396387 260 CpG island CpG island 4065
Cpgi4066 11 110398925 to 110399170 245 CpG island CpG island 4066
Map2k6 11 110399103 to 110516201 117098 + protein coding gene mitogen-activated protein kinase kinase 6
Tssr105712 11 110399115 to 110399155 40 + TSS region transcription start site region 105712
Tssr105713 11 110399161 to 110399173 12 + TSS region transcription start site region 105713
Cpgi4067 11 110406552 to 110406774 222 CpG island CpG island 4067
Gm10836 11 110444903 to 110449328 4425 unclassified gene predicted gene 10836
Gm39446 11 110473119 to 110477114 3995 - lncRNA gene predicted gene, 39446
Tssr105714 11 110479302 to 110479345 43 + TSS region transcription start site region 105714
Tssr105715 11 110479348 to 110479365 17 + TSS region transcription start site region 105715
Tssr105716 11 110479373 to 110479386 13 + TSS region transcription start site region 105716
D11Mit300 11 110493228 to 110493308 80 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 300
Gm30009 11 110532472 to 110533390 918 - lncRNA gene predicted gene, 30009
Tssr111604 11 110533225 to 110533275 50 - TSS region transcription start site region 111604
Tssr105717 11 110535903 to 110535940 37 + TSS region transcription start site region 105717
Gm11682 11 110544507 to 110546399 1892 + lincRNA gene predicted gene 11682
Gm46300 11 110548489 to 110552489 4000 - lncRNA gene predicted gene, 46300
Cpgi4068 11 110563251 to 110563449 198 CpG island CpG island 4068
D11Mit336 11 110628883 to 110629004 121 DNA segment DNA Segment, Chr 11, Massachusetts Institute of Technology 336
D11Mit225 11 110644458 to 110644575 117 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 225
D11Dcr23 11 110713037 to 110713181 144 DNA segment DNA Segment, Chr 11, Derry C. Roopenian 23
D11Mit334 11 110713042 to 110713165 123 DNA segment DNA Segment, Chr 11, Massachusetts Institute of Technology 334
Sstapa3 11 110713165 to 97006867 -13706298 QTL suseptibility to Staphylococcus aureus infection 3
Tssr111605 11 110951909 to 110951914 5 - TSS region transcription start site region 111605
Tssr105718 11 110968016 to 110968042 26 + TSS region transcription start site region 105718
Kcnj16 11 110968033 to 111027968 59935 + protein coding gene potassium inwardly-rectifying channel, subfamily J, member 16
Tssr105719 11 110968056 to 110968070 14 + TSS region transcription start site region 105719
Tssr105720 11 110973035 to 110973039 4 + TSS region transcription start site region 105720
D11Mit252 11 110985100 to 110985195 95 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 252
Tssr105721 11 110997054 to 110997062 8 + TSS region transcription start site region 105721
Tssr105722 11 110997085 to 110997097 12 + TSS region transcription start site region 105722
Tssr105723 11 110997493 to 110997504 11 + TSS region transcription start site region 105723
Tssr105724 11 110997509 to 110997542 33 + TSS region transcription start site region 105724
Tssr105725 11 110997544 to 110997552 8 + TSS region transcription start site region 105725
Tssr105726 11 111023853 to 111023871 18 + TSS region transcription start site region 105726
Tssr105727 11 111026672 to 111026682 10 + TSS region transcription start site region 105727
Tssr105728 11 111026772 to 111026783 11 + TSS region transcription start site region 105728
Tssr105729 11 111026877 to 111026888 11 + TSS region transcription start site region 105729
Tssr105730 11 111026898 to 111026909 11 + TSS region transcription start site region 105730
Tssr105731 11 111026929 to 111026950 21 + TSS region transcription start site region 105731
Tssr105732 11 111027020 to 111027031 11 + TSS region transcription start site region 105732
Tssr105733 11 111027245 to 111027256 11 + TSS region transcription start site region 105733
Tssr105734 11 111027457 to 111027501 44 + TSS region transcription start site region 105734
Cpgi4069 11 111065254 to 111065444 190 CpG island CpG island 4069
Tssr105735 11 111065925 to 111065945 20 + TSS region transcription start site region 105735
Cpgi4070 11 111065935 to 111066325 390 CpG island CpG island 4070
Tssr111606 11 111066056 to 111066077 21 - TSS region transcription start site region 111606
Tssr105736 11 111066154 to 111066174 20 + TSS region transcription start site region 105736
Kcnj2 11 111066164 to 111076821 10657 + protein coding gene potassium inwardly-rectifying channel, subfamily J, member 2
Tssr105737 11 111066183 to 111066188 5 + TSS region transcription start site region 105737
Tssr105738 11 111073717 to 111073739 22 + TSS region transcription start site region 105738
Tssr105739 11 111073778 to 111073792 14 + TSS region transcription start site region 105739
Tssr105740 11 111073932 to 111073936 4 + TSS region transcription start site region 105740
Tssr105741 11 111075431 to 111075444 13 + TSS region transcription start site region 105741
Tssr105742 11 111075451 to 111075472 21 + TSS region transcription start site region 105742
Tssr105743 11 111276053 to 111276078 25 + TSS region transcription start site region 105743
Gm11675 11 111276100 to 111276931 831 + pseudogene predicted gene 11675
D11Mit361 11 111407465 to 111407553 88 DNA segment DNA Segment, Chr 11 Massachusetts Institute of Technology 361
Tssr111607 11 111427998 to 111428019 21 - TSS region transcription start site region 111607
D11Mit202 11 111443224 to 111443422 198 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 202
D11Dcr24 11 111443320 to 111443420 100 DNA segment DNA Segment, Chr 11, Derry C. Roopenian 24
Gm30158 11 111511565 to 111512514 949 - lncRNA gene predicted gene, 30158
Tssr111608 11 111512454 to 111512473 19 - TSS region transcription start site region 111608
Gm11676 11 111612817 to 111613306 489 - pseudogene predicted gene 11676
Gm30219 11 111637255 to 111659013 21758 - lncRNA gene predicted gene, 30219
Gm11677 11 111724648 to 111725624 976 - pseudogene predicted gene 11677
Gm11674 11 111796347 to 111800876 4529 - lincRNA gene predicted gene 11674
Tssr111609 11 111800870 to 111800880 10 - TSS region transcription start site region 111609
Gm30337 11 111802405 to 111839753 37348 + lncRNA gene predicted gene, 30337
Tssr3716 11 111814364 to 111814368 4 + TSS region transcription start site region 3716