Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:109777016-110197027

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40 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
1700012B07Rik 11 109788266 to 109828079 39813 - protein coding gene RIKEN cDNA 1700012B07 gene
Gm11683 11 109797183 to 109802796 5613 + antisense lncRNA gene predicted gene 11683
Tssr111576 11 109797311 to 109797333 22 - TSS region transcription start site region 111576
Tssr111577 11 109797353 to 109797361 8 - TSS region transcription start site region 111577
Tssr111578 11 109797376 to 109797380 4 - TSS region transcription start site region 111578
Tssr111579 11 109797398 to 109797401 3 - TSS region transcription start site region 111579
Tssr111580 11 109801777 to 109801780 3 - TSS region transcription start site region 111580
Tssr105703 11 109803513 to 109803517 4 + TSS region transcription start site region 105703
Tssr111581 11 109828021 to 109828028 7 - TSS region transcription start site region 111581
Tssr111582 11 109828036 to 109828065 29 - TSS region transcription start site region 111582
Tssr111583 11 109828066 to 109828070 4 - TSS region transcription start site region 111583
Tssr105704 11 109845828 to 109845838 10 + TSS region transcription start site region 105704
Tssr105705 11 109845864 to 109845870 6 + TSS region transcription start site region 105705
1700023C21Rik 11 109845878 to 109848476 2598 + lincRNA gene RIKEN cDNA 1700023C21 gene
Gm39444 11 109927805 to 109930588 2783 - lncRNA gene predicted gene, 39444
Abca8b 11 109932568 to 109995840 63272 - protein coding gene ATP-binding cassette, sub-family A (ABC1), member 8b
Tssr105706 11 109936307 to 109936318 11 + TSS region transcription start site region 105706
Gm11697 11 109936316 to 109938135 1819 + antisense lncRNA gene predicted gene 11697
Tssr111584 11 109986894 to 109986906 12 - TSS region transcription start site region 111584
Tssr111585 11 109987016 to 109987027 11 - TSS region transcription start site region 111585
Tssr111586 11 109995641 to 109995653 12 - TSS region transcription start site region 111586
Tssr111587 11 109995658 to 109995681 23 - TSS region transcription start site region 111587
Tssr111588 11 109995747 to 109995762 15 - TSS region transcription start site region 111588
Tssr111589 11 109995775 to 109995800 25 - TSS region transcription start site region 111589
Abca8a 11 110025634 to 110095978 70344 - protein coding gene ATP-binding cassette, sub-family A (ABC1), member 8a
Tssr111590 11 110079120 to 110079137 17 - TSS region transcription start site region 111590
Tssr111591 11 110095955 to 110095969 14 - TSS region transcription start site region 111591
Tssr111592 11 110095974 to 110096043 69 - TSS region transcription start site region 111592
Tssr111593 11 110097544 to 110097586 42 - TSS region transcription start site region 111593
Abca9 11 110100749 to 110168196 67447 - protein coding gene ATP-binding cassette, sub-family A (ABC1), member 9
Tssr105707 11 110145593 to 110145604 11 + TSS region transcription start site region 105707
Tssr105708 11 110145614 to 110145625 11 + TSS region transcription start site region 105708
Tssr111594 11 110154745 to 110154750 5 - TSS region transcription start site region 111594
Tssr111595 11 110168073 to 110168182 109 - TSS region transcription start site region 111595
Abca6 11 110176820 to 110251776 74956 - protein coding gene ATP-binding cassette, sub-family A (ABC1), member 6
Tssr105709 11 110180161 to 110180173 12 + TSS region transcription start site region 105709
Tssr105710 11 110180183 to 110180211 28 + TSS region transcription start site region 105710
Tssr105711 11 110180216 to 110180229 13 + TSS region transcription start site region 105711
Gm46299 11 110180251 to 110180827 576 + lncRNA gene predicted gene, 46299
Tssr111596 11 110190776 to 110190777 1 - TSS region transcription start site region 111596