Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:109710628-115320651

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571 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pbd1 11 102453297 to 112493297 10040000 QTL peak bone density 1
Bolt 11 102894911 to 113919427 11024516 heritable phenotypic marker lightning bolt tail
Cia40 11 103383166 to 115130618 11747452 QTL collagen induced arthritis QTL 40
Hmtb6 11 107725518 to 110629004 2903486 QTL hemostasis and thrombosis rebleeding time 6
Fam20a 11 109672926 to 109722512 49586 - protein coding gene family with sequence similarity 20, member A
Tssr111566 11 109716740 to 109716743 3 - TSS region transcription start site region 111566
Tssr105699 11 109717272 to 109717277 5 + TSS region transcription start site region 105699
Cpgi4062 11 109721156 to 109722438 1282 CpG island CpG island 4062
Tssr111567 11 109721639 to 109721655 16 - TSS region transcription start site region 111567
Tssr111568 11 109721704 to 109721716 12 - TSS region transcription start site region 111568
Tssr111569 11 109721723 to 109721798 75 - TSS region transcription start site region 111569
Tssr111570 11 109722018 to 109722057 39 - TSS region transcription start site region 111570
Tssr111571 11 109722081 to 109722095 14 - TSS region transcription start site region 111571
Tssr111572 11 109722174 to 109722186 12 - TSS region transcription start site region 111572
Tssr111573 11 109722214 to 109722289 75 - TSS region transcription start site region 111573
Tssr111574 11 109722348 to 109722360 12 - TSS region transcription start site region 111574
Gm42093 11 109734827 to 109748521 13694 + lncRNA gene predicted gene, 42093
Tssr105700 11 109736643 to 109736645 2 + TSS region transcription start site region 105700
Tssr105701 11 109755029 to 109755050 21 + TSS region transcription start site region 105701
Tssr105702 11 109764266 to 109764267 1 + TSS region transcription start site region 105702
9130022K11Rik 11 109765416 to 109766247 831 unclassified gene RIKEN cDNA 9130022K11 gene
Gm11684 11 109768486 to 109770599 2113 + antisense lncRNA gene predicted gene 11684
Tssr111575 11 109771493 to 109771532 39 - TSS region transcription start site region 111575
1700012B07Rik 11 109788266 to 109828079 39813 - protein coding gene RIKEN cDNA 1700012B07 gene
Gm11683 11 109797183 to 109802796 5613 + antisense lncRNA gene predicted gene 11683
Tssr111576 11 109797311 to 109797333 22 - TSS region transcription start site region 111576
Tssr111577 11 109797353 to 109797361 8 - TSS region transcription start site region 111577
Tssr111578 11 109797376 to 109797380 4 - TSS region transcription start site region 111578
Tssr111579 11 109797398 to 109797401 3 - TSS region transcription start site region 111579
Tssr111580 11 109801777 to 109801780 3 - TSS region transcription start site region 111580
Tssr105703 11 109803513 to 109803517 4 + TSS region transcription start site region 105703
Tssr111581 11 109828021 to 109828028 7 - TSS region transcription start site region 111581
Tssr111582 11 109828036 to 109828065 29 - TSS region transcription start site region 111582
Tssr111583 11 109828066 to 109828070 4 - TSS region transcription start site region 111583
Tssr105704 11 109845828 to 109845838 10 + TSS region transcription start site region 105704
Tssr105705 11 109845864 to 109845870 6 + TSS region transcription start site region 105705
1700023C21Rik 11 109845878 to 109848476 2598 + lincRNA gene RIKEN cDNA 1700023C21 gene
Gm39444 11 109927805 to 109930588 2783 - lncRNA gene predicted gene, 39444
Abca8b 11 109932568 to 109995840 63272 - protein coding gene ATP-binding cassette, sub-family A (ABC1), member 8b
Tssr105706 11 109936307 to 109936318 11 + TSS region transcription start site region 105706
Gm11697 11 109936316 to 109938135 1819 + antisense lncRNA gene predicted gene 11697
Tssr111584 11 109986894 to 109986906 12 - TSS region transcription start site region 111584
Tssr111585 11 109987016 to 109987027 11 - TSS region transcription start site region 111585
Tssr111586 11 109995641 to 109995653 12 - TSS region transcription start site region 111586
Tssr111587 11 109995658 to 109995681 23 - TSS region transcription start site region 111587
Tssr111588 11 109995747 to 109995762 15 - TSS region transcription start site region 111588
Tssr111589 11 109995775 to 109995800 25 - TSS region transcription start site region 111589
Abca8a 11 110025634 to 110095978 70344 - protein coding gene ATP-binding cassette, sub-family A (ABC1), member 8a
Tssr111590 11 110079120 to 110079137 17 - TSS region transcription start site region 111590
Tssr111591 11 110095955 to 110095969 14 - TSS region transcription start site region 111591
Tssr111592 11 110095974 to 110096043 69 - TSS region transcription start site region 111592
Tssr111593 11 110097544 to 110097586 42 - TSS region transcription start site region 111593
Abca9 11 110100749 to 110168196 67447 - protein coding gene ATP-binding cassette, sub-family A (ABC1), member 9
Tssr105707 11 110145593 to 110145604 11 + TSS region transcription start site region 105707
Tssr105708 11 110145614 to 110145625 11 + TSS region transcription start site region 105708
Tssr111594 11 110154745 to 110154750 5 - TSS region transcription start site region 111594
Tssr111595 11 110168073 to 110168182 109 - TSS region transcription start site region 111595
Abca6 11 110176820 to 110251776 74956 - protein coding gene ATP-binding cassette, sub-family A (ABC1), member 6
Tssr105709 11 110180161 to 110180173 12 + TSS region transcription start site region 105709
Tssr105710 11 110180183 to 110180211 28 + TSS region transcription start site region 105710
Tssr105711 11 110180216 to 110180229 13 + TSS region transcription start site region 105711
Gm46299 11 110180251 to 110180827 576 + lncRNA gene predicted gene, 46299
Tssr111596 11 110190776 to 110190777 1 - TSS region transcription start site region 111596
Tssr111597 11 110241658 to 110241665 7 - TSS region transcription start site region 111597
Tssr111598 11 110251632 to 110251641 9 - TSS region transcription start site region 111598
Tssr111599 11 110251693 to 110251704 11 - TSS region transcription start site region 111599
Tssr111600 11 110251711 to 110251734 23 - TSS region transcription start site region 111600
Tssr111601 11 110251736 to 110251754 18 - TSS region transcription start site region 111601
Tssr111602 11 110252410 to 110252423 13 - TSS region transcription start site region 111602
Abca5 11 110269369 to 110337716 68347 - protein coding gene ATP-binding cassette, sub-family A (ABC1), member 5
Cpgi4063 11 110337013 to 110338132 1119 CpG island CpG island 4063
Tssr111603 11 110337612 to 110337704 92 - TSS region transcription start site region 111603
Gm39445 11 110337838 to 110340005 2167 + lncRNA gene predicted gene, 39445
D11Mit100 11 110338357 to 110338465 108 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 100
El6 11 110338357 to 110338465 108 QTL epilepsy 6
D11Dcr22 11 110338357 to 110338464 107 DNA segment DNA Segment, Chr 11, Derry C. Roopenian 22
D11Mit182 11 110375973 to 110376152 179 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 182
Cpgi4064 11 110379918 to 110380249 331 CpG island CpG island 4064
Cpgi4065 11 110396127 to 110396387 260 CpG island CpG island 4065
Cpgi4066 11 110398925 to 110399170 245 CpG island CpG island 4066
Map2k6 11 110399103 to 110516201 117098 + protein coding gene mitogen-activated protein kinase kinase 6
Tssr105712 11 110399115 to 110399155 40 + TSS region transcription start site region 105712
Tssr105713 11 110399161 to 110399173 12 + TSS region transcription start site region 105713
Cpgi4067 11 110406552 to 110406774 222 CpG island CpG island 4067
Gm10836 11 110444903 to 110449328 4425 unclassified gene predicted gene 10836
Gm39446 11 110473119 to 110477114 3995 - lncRNA gene predicted gene, 39446
Tssr105714 11 110479302 to 110479345 43 + TSS region transcription start site region 105714
Tssr105715 11 110479348 to 110479365 17 + TSS region transcription start site region 105715
Tssr105716 11 110479373 to 110479386 13 + TSS region transcription start site region 105716
D11Mit300 11 110493228 to 110493308 80 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 300
Gm30009 11 110532472 to 110533390 918 - lncRNA gene predicted gene, 30009
Tssr111604 11 110533225 to 110533275 50 - TSS region transcription start site region 111604
Tssr105717 11 110535903 to 110535940 37 + TSS region transcription start site region 105717
Gm11682 11 110544507 to 110546399 1892 + lincRNA gene predicted gene 11682
Gm46300 11 110548489 to 110552489 4000 - lncRNA gene predicted gene, 46300
Cpgi4068 11 110563251 to 110563449 198 CpG island CpG island 4068
D11Mit336 11 110628883 to 110629004 121 DNA segment DNA Segment, Chr 11, Massachusetts Institute of Technology 336
D11Mit225 11 110644458 to 110644575 117 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 225
D11Dcr23 11 110713037 to 110713181 144 DNA segment DNA Segment, Chr 11, Derry C. Roopenian 23
D11Mit334 11 110713042 to 110713165 123 DNA segment DNA Segment, Chr 11, Massachusetts Institute of Technology 334
Sstapa3 11 110713165 to 97006867 -13706298 QTL suseptibility to Staphylococcus aureus infection 3
Tssr111605 11 110951909 to 110951914 5 - TSS region transcription start site region 111605
Tssr105718 11 110968016 to 110968042 26 + TSS region transcription start site region 105718
Kcnj16 11 110968033 to 111027968 59935 + protein coding gene potassium inwardly-rectifying channel, subfamily J, member 16
Tssr105719 11 110968056 to 110968070 14 + TSS region transcription start site region 105719
Tssr105720 11 110973035 to 110973039 4 + TSS region transcription start site region 105720
D11Mit252 11 110985100 to 110985195 95 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 252
Tssr105721 11 110997054 to 110997062 8 + TSS region transcription start site region 105721
Tssr105722 11 110997085 to 110997097 12 + TSS region transcription start site region 105722
Tssr105723 11 110997493 to 110997504 11 + TSS region transcription start site region 105723
Tssr105724 11 110997509 to 110997542 33 + TSS region transcription start site region 105724
Tssr105725 11 110997544 to 110997552 8 + TSS region transcription start site region 105725
Tssr105726 11 111023853 to 111023871 18 + TSS region transcription start site region 105726
Tssr105727 11 111026672 to 111026682 10 + TSS region transcription start site region 105727
Tssr105728 11 111026772 to 111026783 11 + TSS region transcription start site region 105728
Tssr105729 11 111026877 to 111026888 11 + TSS region transcription start site region 105729
Tssr105730 11 111026898 to 111026909 11 + TSS region transcription start site region 105730
Tssr105731 11 111026929 to 111026950 21 + TSS region transcription start site region 105731
Tssr105732 11 111027020 to 111027031 11 + TSS region transcription start site region 105732
Tssr105733 11 111027245 to 111027256 11 + TSS region transcription start site region 105733
Tssr105734 11 111027457 to 111027501 44 + TSS region transcription start site region 105734
Cpgi4069 11 111065254 to 111065444 190 CpG island CpG island 4069
Tssr105735 11 111065925 to 111065945 20 + TSS region transcription start site region 105735
Cpgi4070 11 111065935 to 111066325 390 CpG island CpG island 4070
Tssr111606 11 111066056 to 111066077 21 - TSS region transcription start site region 111606
Tssr105736 11 111066154 to 111066174 20 + TSS region transcription start site region 105736
Kcnj2 11 111066164 to 111076821 10657 + protein coding gene potassium inwardly-rectifying channel, subfamily J, member 2
Tssr105737 11 111066183 to 111066188 5 + TSS region transcription start site region 105737
Tssr105738 11 111073717 to 111073739 22 + TSS region transcription start site region 105738
Tssr105739 11 111073778 to 111073792 14 + TSS region transcription start site region 105739
Tssr105740 11 111073932 to 111073936 4 + TSS region transcription start site region 105740
Tssr105741 11 111075431 to 111075444 13 + TSS region transcription start site region 105741
Tssr105742 11 111075451 to 111075472 21 + TSS region transcription start site region 105742
Tssr105743 11 111276053 to 111276078 25 + TSS region transcription start site region 105743
Gm11675 11 111276100 to 111276931 831 + pseudogene predicted gene 11675
D11Mit361 11 111407465 to 111407553 88 DNA segment DNA Segment, Chr 11 Massachusetts Institute of Technology 361
Tssr111607 11 111427998 to 111428019 21 - TSS region transcription start site region 111607
D11Mit202 11 111443224 to 111443422 198 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 202
D11Dcr24 11 111443320 to 111443420 100 DNA segment DNA Segment, Chr 11, Derry C. Roopenian 24
Gm30158 11 111511565 to 111512514 949 - lncRNA gene predicted gene, 30158
Tssr111608 11 111512454 to 111512473 19 - TSS region transcription start site region 111608
Gm11676 11 111612817 to 111613306 489 - pseudogene predicted gene 11676
Gm30219 11 111637255 to 111659013 21758 - lncRNA gene predicted gene, 30219
Gm11677 11 111724648 to 111725624 976 - pseudogene predicted gene 11677
Gm11674 11 111796347 to 111800876 4529 - lincRNA gene predicted gene 11674
Tssr111609 11 111800870 to 111800880 10 - TSS region transcription start site region 111609
Gm30337 11 111802405 to 111839753 37348 + lncRNA gene predicted gene, 30337
Tssr3716 11 111814364 to 111814368 4 + TSS region transcription start site region 3716
D11Mit11 11 111948715 to 111948949 234 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 11
Gm11679 11 112042800 to 112043578 778 - pseudogene predicted gene 11679
Gm11680 11 112107438 to 112132196 24758 + lincRNA gene predicted gene 11680
Tssr111610 11 112131781 to 112131782 1 - TSS region transcription start site region 111610
Gm39461 11 112156600 to 112174941 18341 + lncRNA gene predicted gene, 39461
4930401C12Rik 11 112156893 to 112157350 457 unclassified gene RIKEN cDNA 4930401C12 gene
Tssr111611 11 112157330 to 112157361 31 - TSS region transcription start site region 111611
D11Ertd4e 11 112187531 to 112187745 214 DNA segment DNA segment, Chr 11, ERATO Doi 4, expressed
D11Dcr36 11 112262401 to 112262498 97 DNA segment DNA Segment, Chr 11, Derry C. Roopenian 36
D11Dcr37 11 112405931 to 112406029 98 DNA segment DNA Segment, Chr 11, Derry C. Roopenian 37
D11Mit301 11 112411778 to 112411890 112 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 301
D11Dcr25 11 112411786 to 112411886 100 DNA segment DNA Segment, Chr 11, Derry C. Roopenian 25
Tssr3717 11 112469203 to 112469204 1 - TSS region transcription start site region 3717
D11Mit184 11 112493147 to 112493297 150 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 184
Alcp18 11 112513139 to 112513276 137 QTL alcohol preference locus 18, male specific
Alcp20 11 112513139 to 112513276 137 QTL alcohol preference locus 20, female specific
D11Mit61 11 112513139 to 112513276 137 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 61
D11Dcr26 11 112513150 to 112513254 104 DNA segment DNA Segment, Chr 11, Derry C. Roopenian 26
Tssr111612 11 112515628 to 112515651 23 - TSS region transcription start site region 111612
D11Mit101 11 112653527 to 112653728 201 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 101
Heal26 11 112653728 to 93048547 -19605181 QTL wound healing/regeneration 26
BC006965 11 112663927 to 112711356 47429 - lncRNA gene cDNA sequence BC006965
Tssr111613 11 112711350 to 112711367 17 - TSS region transcription start site region 111613
Tssr111614 11 112711469 to 112711479 10 - TSS region transcription start site region 111614
Tssr111615 11 112774353 to 112774362 9 - TSS region transcription start site region 111615
D11Mit291 11 112779076 to 112779167 91 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 291
Cpgi4071 11 112781229 to 112783141 1912 CpG island CpG island 4071
Tssr105744 11 112782182 to 112782248 66 + TSS region transcription start site region 105744
Sox9 11 112782224 to 112787760 5536 + protein coding gene SRY (sex determining region Y)-box 9
Cpgi4072 11 112783821 to 112784242 421 CpG island CpG island 4072
Cpgi4073 11 112784457 to 112785512 1055 CpG island CpG island 4073
Tssr3718 11 112784895 to 112784909 14 + TSS region transcription start site region 3718
Tssr3719 11 112785282 to 112785293 11 + TSS region transcription start site region 3719
Tssr105745 11 112786867 to 112786877 10 + TSS region transcription start site region 105745
Tssr105746 11 112787426 to 112787430 4 + TSS region transcription start site region 105746
Gm11681 11 112792731 to 112799008 6277 - lincRNA gene predicted gene 11681
Gm30562 11 112805916 to 112810575 4659 - lncRNA gene predicted gene, 30562
Tssr105747 11 112806598 to 112806602 4 + TSS region transcription start site region 105747
1700012H19Rik 11 112822965 to 112825128 2163 - lncRNA gene RIKEN cDNA 1700012H19 gene
Tssr111616 11 112825095 to 112825139 44 - TSS region transcription start site region 111616
4933434M16Rik 11 112825154 to 112832469 7315 + lincRNA gene RIKEN cDNA 4933434M16 gene
Tssr105748 11 112825163 to 112825190 27 + TSS region transcription start site region 105748
Gm46301 11 112859281 to 112894387 35106 + lncRNA gene predicted gene, 46301
2610035D17Rik 11 113043906 to 113201838 157932 - lincRNA gene RIKEN cDNA 2610035D17 gene
Tssr105749 11 113061235 to 113061273 38 + TSS region transcription start site region 105749
Tssr111617 11 113063199 to 113063208 9 - TSS region transcription start site region 111617
Tssr3720 11 113094297 to 113094310 13 + TSS region transcription start site region 3720
D11Mit42.1 11 113124742 to 113124870 128 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 42.1
D11Mit42 11 113124852 to 113124967 115 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 42
Gm39467 11 113132826 to 113134232 1406 - lncRNA gene predicted gene, 39467
Tssr111618 11 113155140 to 113155157 17 - TSS region transcription start site region 111618
D11Mit254 11 113162866 to 113163140 274 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 254