Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:109640216-110720229

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119 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Hmtb6 11 107725518 to 110629004 2903486 QTL hemostasis and thrombosis rebleeding time 6
Gm11685 11 109616320 to 109641789 25469 + lincRNA gene predicted gene 11685
Tssr105689 11 109649376 to 109649437 61 + TSS region transcription start site region 105689
Prkar1a 11 109649405 to 109669656 20251 + protein coding gene protein kinase, cAMP dependent regulatory, type I, alpha
Cpgi4061 11 109650223 to 109651901 1678 CpG island CpG island 4061
Tssr3713 11 109650346 to 109650349 3 + TSS region transcription start site region 3713
Tssr105690 11 109650508 to 109650529 21 + TSS region transcription start site region 105690
Tssr105691 11 109650534 to 109650554 20 + TSS region transcription start site region 105691
Tssr105692 11 109650574 to 109650579 5 + TSS region transcription start site region 105692
Tssr105693 11 109650925 to 109651003 78 + TSS region transcription start site region 105693
Tssr3714 11 109651004 to 109651009 5 + TSS region transcription start site region 3714
Tssr105694 11 109651129 to 109651160 31 + TSS region transcription start site region 105694
Tssr105695 11 109651459 to 109651470 11 + TSS region transcription start site region 105695
Gm39443 11 109653968 to 109656793 2825 + lncRNA gene predicted gene, 39443
Tssr105696 11 109662621 to 109662628 7 + TSS region transcription start site region 105696
Tssr105697 11 109667603 to 109667627 24 + TSS region transcription start site region 105697
Tssr105698 11 109668580 to 109668668 88 + TSS region transcription start site region 105698
Fam20a 11 109672926 to 109722512 49586 - protein coding gene family with sequence similarity 20, member A
Tssr3715 11 109674865 to 109674870 5 + TSS region transcription start site region 3715
Tssr111563 11 109676094 to 109676099 5 - TSS region transcription start site region 111563
Tssr111564 11 109676130 to 109676147 17 - TSS region transcription start site region 111564
Tssr111565 11 109676156 to 109676168 12 - TSS region transcription start site region 111565
4930507L24Rik 11 109691580 to 109707091 15511 + lncRNA gene RIKEN cDNA 4930507L24 gene
Tssr111566 11 109716740 to 109716743 3 - TSS region transcription start site region 111566
Tssr105699 11 109717272 to 109717277 5 + TSS region transcription start site region 105699
Cpgi4062 11 109721156 to 109722438 1282 CpG island CpG island 4062
Tssr111567 11 109721639 to 109721655 16 - TSS region transcription start site region 111567
Tssr111568 11 109721704 to 109721716 12 - TSS region transcription start site region 111568
Tssr111569 11 109721723 to 109721798 75 - TSS region transcription start site region 111569
Tssr111570 11 109722018 to 109722057 39 - TSS region transcription start site region 111570
Tssr111571 11 109722081 to 109722095 14 - TSS region transcription start site region 111571
Tssr111572 11 109722174 to 109722186 12 - TSS region transcription start site region 111572
Tssr111573 11 109722214 to 109722289 75 - TSS region transcription start site region 111573
Tssr111574 11 109722348 to 109722360 12 - TSS region transcription start site region 111574
Gm42093 11 109734827 to 109748521 13694 + lncRNA gene predicted gene, 42093
Tssr105700 11 109736643 to 109736645 2 + TSS region transcription start site region 105700
Tssr105701 11 109755029 to 109755050 21 + TSS region transcription start site region 105701
Tssr105702 11 109764266 to 109764267 1 + TSS region transcription start site region 105702
9130022K11Rik 11 109765416 to 109766247 831 unclassified gene RIKEN cDNA 9130022K11 gene
Gm11684 11 109768486 to 109770599 2113 + antisense lncRNA gene predicted gene 11684
Tssr111575 11 109771493 to 109771532 39 - TSS region transcription start site region 111575
1700012B07Rik 11 109788266 to 109828079 39813 - protein coding gene RIKEN cDNA 1700012B07 gene
Gm11683 11 109797183 to 109802796 5613 + antisense lncRNA gene predicted gene 11683
Tssr111576 11 109797311 to 109797333 22 - TSS region transcription start site region 111576
Tssr111577 11 109797353 to 109797361 8 - TSS region transcription start site region 111577
Tssr111578 11 109797376 to 109797380 4 - TSS region transcription start site region 111578
Tssr111579 11 109797398 to 109797401 3 - TSS region transcription start site region 111579
Tssr111580 11 109801777 to 109801780 3 - TSS region transcription start site region 111580
Tssr105703 11 109803513 to 109803517 4 + TSS region transcription start site region 105703
Tssr111581 11 109828021 to 109828028 7 - TSS region transcription start site region 111581
Tssr111582 11 109828036 to 109828065 29 - TSS region transcription start site region 111582
Tssr111583 11 109828066 to 109828070 4 - TSS region transcription start site region 111583
Tssr105704 11 109845828 to 109845838 10 + TSS region transcription start site region 105704
Tssr105705 11 109845864 to 109845870 6 + TSS region transcription start site region 105705
1700023C21Rik 11 109845878 to 109848476 2598 + lincRNA gene RIKEN cDNA 1700023C21 gene
Gm39444 11 109927805 to 109930588 2783 - lncRNA gene predicted gene, 39444
Abca8b 11 109932568 to 109995840 63272 - protein coding gene ATP-binding cassette, sub-family A (ABC1), member 8b
Tssr105706 11 109936307 to 109936318 11 + TSS region transcription start site region 105706
Gm11697 11 109936316 to 109938135 1819 + antisense lncRNA gene predicted gene 11697
Tssr111584 11 109986894 to 109986906 12 - TSS region transcription start site region 111584
Tssr111585 11 109987016 to 109987027 11 - TSS region transcription start site region 111585
Tssr111586 11 109995641 to 109995653 12 - TSS region transcription start site region 111586
Tssr111587 11 109995658 to 109995681 23 - TSS region transcription start site region 111587
Tssr111588 11 109995747 to 109995762 15 - TSS region transcription start site region 111588
Tssr111589 11 109995775 to 109995800 25 - TSS region transcription start site region 111589
Abca8a 11 110025634 to 110095978 70344 - protein coding gene ATP-binding cassette, sub-family A (ABC1), member 8a
Tssr111590 11 110079120 to 110079137 17 - TSS region transcription start site region 111590
Tssr111591 11 110095955 to 110095969 14 - TSS region transcription start site region 111591
Tssr111592 11 110095974 to 110096043 69 - TSS region transcription start site region 111592
Tssr111593 11 110097544 to 110097586 42 - TSS region transcription start site region 111593
Abca9 11 110100749 to 110168196 67447 - protein coding gene ATP-binding cassette, sub-family A (ABC1), member 9
Tssr105707 11 110145593 to 110145604 11 + TSS region transcription start site region 105707
Tssr105708 11 110145614 to 110145625 11 + TSS region transcription start site region 105708
Tssr111594 11 110154745 to 110154750 5 - TSS region transcription start site region 111594
Tssr111595 11 110168073 to 110168182 109 - TSS region transcription start site region 111595
Abca6 11 110176820 to 110251776 74956 - protein coding gene ATP-binding cassette, sub-family A (ABC1), member 6
Tssr105709 11 110180161 to 110180173 12 + TSS region transcription start site region 105709
Tssr105710 11 110180183 to 110180211 28 + TSS region transcription start site region 105710
Tssr105711 11 110180216 to 110180229 13 + TSS region transcription start site region 105711
Gm46299 11 110180251 to 110180827 576 + lncRNA gene predicted gene, 46299
Tssr111596 11 110190776 to 110190777 1 - TSS region transcription start site region 111596
Tssr111597 11 110241658 to 110241665 7 - TSS region transcription start site region 111597
Tssr111598 11 110251632 to 110251641 9 - TSS region transcription start site region 111598
Tssr111599 11 110251693 to 110251704 11 - TSS region transcription start site region 111599
Tssr111600 11 110251711 to 110251734 23 - TSS region transcription start site region 111600
Tssr111601 11 110251736 to 110251754 18 - TSS region transcription start site region 111601
Tssr111602 11 110252410 to 110252423 13 - TSS region transcription start site region 111602
Abca5 11 110269369 to 110337716 68347 - protein coding gene ATP-binding cassette, sub-family A (ABC1), member 5
Cpgi4063 11 110337013 to 110338132 1119 CpG island CpG island 4063
Tssr111603 11 110337612 to 110337704 92 - TSS region transcription start site region 111603
Gm39445 11 110337838 to 110340005 2167 + lncRNA gene predicted gene, 39445
D11Mit100 11 110338357 to 110338465 108 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 100
D11Dcr22 11 110338357 to 110338464 107 DNA segment DNA Segment, Chr 11, Derry C. Roopenian 22
El6 11 110338357 to 110338465 108 QTL epilepsy 6
D11Mit182 11 110375973 to 110376152 179 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 182
Cpgi4064 11 110379918 to 110380249 331 CpG island CpG island 4064
Cpgi4065 11 110396127 to 110396387 260 CpG island CpG island 4065
Cpgi4066 11 110398925 to 110399170 245 CpG island CpG island 4066
Map2k6 11 110399103 to 110516201 117098 + protein coding gene mitogen-activated protein kinase kinase 6
Tssr105712 11 110399115 to 110399155 40 + TSS region transcription start site region 105712
Tssr105713 11 110399161 to 110399173 12 + TSS region transcription start site region 105713
Cpgi4067 11 110406552 to 110406774 222 CpG island CpG island 4067
Gm10836 11 110444903 to 110449328 4425 unclassified gene predicted gene 10836
Gm39446 11 110473119 to 110477114 3995 - lncRNA gene predicted gene, 39446
Tssr105714 11 110479302 to 110479345 43 + TSS region transcription start site region 105714
Tssr105715 11 110479348 to 110479365 17 + TSS region transcription start site region 105715
Tssr105716 11 110479373 to 110479386 13 + TSS region transcription start site region 105716
D11Mit300 11 110493228 to 110493308 80 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 300
Gm30009 11 110532472 to 110533390 918 - lncRNA gene predicted gene, 30009
Tssr111604 11 110533225 to 110533275 50 - TSS region transcription start site region 111604
Tssr105717 11 110535903 to 110535940 37 + TSS region transcription start site region 105717
Gm11682 11 110544507 to 110546399 1892 + lincRNA gene predicted gene 11682
Gm46300 11 110548489 to 110552489 4000 - lncRNA gene predicted gene, 46300
Cpgi4068 11 110563251 to 110563449 198 CpG island CpG island 4068
D11Mit336 11 110628883 to 110629004 121 DNA segment DNA Segment, Chr 11, Massachusetts Institute of Technology 336
D11Mit225 11 110644458 to 110644575 117 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 225
D11Dcr23 11 110713037 to 110713181 144 DNA segment DNA Segment, Chr 11, Derry C. Roopenian 23
D11Mit334 11 110713042 to 110713165 123 DNA segment DNA Segment, Chr 11, Massachusetts Institute of Technology 334
Sstapa3 11 110713165 to 97006867 -13706298 QTL suseptibility to Staphylococcus aureus infection 3