Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:109556124-109676151

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36 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Arsg 11 109473374 to 109573330 99956 + protein coding gene arylsulfatase G
Wipi1 11 109573521 to 109611389 37868 - protein coding gene WD repeat domain, phosphoinositide interacting 1
Tssr111555 11 109573646 to 109573660 14 - TSS region transcription start site region 111555
Gm39442 11 109580350 to 109597095 16745 + lncRNA gene predicted gene, 39442
Tssr111556 11 109580868 to 109580881 13 - TSS region transcription start site region 111556
Tssr111557 11 109603804 to 109603844 40 - TSS region transcription start site region 111557
Tssr111558 11 109607720 to 109607724 4 - TSS region transcription start site region 111558
Cpgi4059 11 109610862 to 109612229 1367 CpG island CpG island 4059
Tssr111559 11 109611324 to 109611330 6 - TSS region transcription start site region 111559
Tssr111560 11 109611337 to 109611349 12 - TSS region transcription start site region 111560
Tssr111561 11 109611353 to 109611414 61 - TSS region transcription start site region 111561
Tssr111562 11 109611417 to 109611426 9 - TSS region transcription start site region 111562
Tssr105686 11 109613414 to 109613425 11 + TSS region transcription start site region 105686
Tssr105687 11 109613442 to 109613460 18 + TSS region transcription start site region 105687
Tssr105688 11 109616124 to 109616151 27 + TSS region transcription start site region 105688
Gm11685 11 109616320 to 109641789 25469 + lincRNA gene predicted gene 11685
Cpgi4060 11 109635306 to 109635637 331 CpG island CpG island 4060
Tssr105689 11 109649376 to 109649437 61 + TSS region transcription start site region 105689
Prkar1a 11 109649405 to 109669656 20251 + protein coding gene protein kinase, cAMP dependent regulatory, type I, alpha
Cpgi4061 11 109650223 to 109651901 1678 CpG island CpG island 4061
Tssr3713 11 109650346 to 109650349 3 + TSS region transcription start site region 3713
Tssr105690 11 109650508 to 109650529 21 + TSS region transcription start site region 105690
Tssr105691 11 109650534 to 109650554 20 + TSS region transcription start site region 105691
Tssr105692 11 109650574 to 109650579 5 + TSS region transcription start site region 105692
Tssr105693 11 109650925 to 109651003 78 + TSS region transcription start site region 105693
Tssr3714 11 109651004 to 109651009 5 + TSS region transcription start site region 3714
Tssr105694 11 109651129 to 109651160 31 + TSS region transcription start site region 105694
Tssr105695 11 109651459 to 109651470 11 + TSS region transcription start site region 105695
Gm39443 11 109653968 to 109656793 2825 + lncRNA gene predicted gene, 39443
Tssr105696 11 109662621 to 109662628 7 + TSS region transcription start site region 105696
Tssr105697 11 109667603 to 109667627 24 + TSS region transcription start site region 105697
Tssr105698 11 109668580 to 109668668 88 + TSS region transcription start site region 105698
Fam20a 11 109672926 to 109722512 49586 - protein coding gene family with sequence similarity 20, member A
Tssr3715 11 109674865 to 109674870 5 + TSS region transcription start site region 3715
Tssr111563 11 109676094 to 109676099 5 - TSS region transcription start site region 111563
Tssr111564 11 109676130 to 109676147 17 - TSS region transcription start site region 111564