Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:108975967-109485971

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129 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm36876 11 108981494 to 109034783 53289 + lncRNA gene predicted gene, 36876
Gm11668 11 109007651 to 109008781 1130 + pseudogene predicted gene 11668
Cpgi4049 11 109011642 to 109012316 674 CpG island CpG island 4049
Tssr111515 11 109011705 to 109011732 27 - TSS region transcription start site region 111515
Tssr105627 11 109011715 to 109011755 40 + TSS region transcription start site region 105627
Tssr111516 11 109011771 to 109011782 11 - TSS region transcription start site region 111516
Tssr105628 11 109011815 to 109011826 11 + TSS region transcription start site region 105628
Tssr105629 11 109011831 to 109011859 28 + TSS region transcription start site region 105629
Tssr111517 11 109011840 to 109011853 13 - TSS region transcription start site region 111517
Tssr111518 11 109011860 to 109011871 11 - TSS region transcription start site region 111518
Tssr105630 11 109011869 to 109011906 37 + TSS region transcription start site region 105630
Tssr111519 11 109011873 to 109011882 9 - TSS region transcription start site region 111519
Tssr111520 11 109011903 to 109011940 37 - TSS region transcription start site region 111520
Tssr105631 11 109011986 to 109011994 8 + TSS region transcription start site region 105631
Tssr111521 11 109011988 to 109012000 12 - TSS region transcription start site region 111521
Gm24149 11 109066984 to 109067090 106 - snRNA gene predicted gene, 24149
Tssr111522 11 109102708 to 109102750 42 - TSS region transcription start site region 111522
E030025P04Rik 11 109139291 to 109144369 5078 - protein coding gene RIKEN cDNA E030025P04 gene
Tssr111523 11 109144340 to 109144377 37 - TSS region transcription start site region 111523
Gm11658 11 109159187 to 109160194 1007 - pseudogene predicted gene 11658
Gm39440 11 109213415 to 109219733 6318 - lncRNA gene predicted gene, 39440
Rgs9 11 109225355 to 109298129 72774 - protein coding gene regulator of G-protein signaling 9
Tssr3711 11 109230967 to 109230971 4 - TSS region transcription start site region 3711
Tssr111524 11 109231013 to 109231032 19 - TSS region transcription start site region 111524
Tssr111525 11 109231165 to 109231175 10 - TSS region transcription start site region 111525
D11Mit180 11 109245750 to 109245898 148 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 180
Tssr111526 11 109246915 to 109246926 11 - TSS region transcription start site region 111526
Tssr111527 11 109246960 to 109246977 17 - TSS region transcription start site region 111527
Tssr105632 11 109269772 to 109269812 40 + TSS region transcription start site region 105632
Cpgi4050 11 109288266 to 109289091 825 CpG island CpG island 4050
Tssr111528 11 109289540 to 109289585 45 - TSS region transcription start site region 111528
Cpgi4051 11 109297828 to 109298373 545 CpG island CpG island 4051
Tssr111529 11 109298072 to 109298079 7 - TSS region transcription start site region 111529
Tssr111530 11 109298090 to 109298118 28 - TSS region transcription start site region 111530
Tssr111531 11 109298121 to 109298142 21 - TSS region transcription start site region 111531
Gm39441 11 109298225 to 109307787 9562 + lncRNA gene predicted gene, 39441
Cpgi4052 11 109312325 to 109312528 203 CpG island CpG island 4052
D11Mit181 11 109328350 to 109328475 125 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 181
nmf148 11 109328475 to 98683655 -10644820 heritable phenotypic marker neuroscience mutagenesis facility, 148
1600015H23Rik 11 109343878 to 109345258 1380 + lncRNA gene RIKEN cDNA 1600015H23 gene
Tssr105633 11 109343924 to 109343955 31 + TSS region transcription start site region 105633
Tssr105634 11 109344281 to 109344297 16 + TSS region transcription start site region 105634
1700096J18Rik 11 109346867 to 109353651 6784 + lincRNA gene RIKEN cDNA 1700096J18 gene
Tssr105635 11 109346875 to 109346886 11 + TSS region transcription start site region 105635
Tssr105636 11 109353699 to 109353721 22 + TSS region transcription start site region 105636
Gm11696 11 109354778 to 109363654 8876 - antisense lncRNA gene predicted gene 11696
Tssr111532 11 109358742 to 109358779 37 - TSS region transcription start site region 111532
Tssr105637 11 109359584 to 109359614 30 + TSS region transcription start site region 105637
Tssr105638 11 109361935 to 109361942 7 + TSS region transcription start site region 105638
Cpgi4053 11 109361988 to 109363754 1766 CpG island CpG island 4053
Tssr105639 11 109362029 to 109362045 16 + TSS region transcription start site region 105639
Tssr105640 11 109362061 to 109362075 14 + TSS region transcription start site region 105640
Tssr105641 11 109362088 to 109362104 16 + TSS region transcription start site region 105641
Tssr111533 11 109362442 to 109362450 8 - TSS region transcription start site region 111533
Tssr111534 11 109362465 to 109362475 10 - TSS region transcription start site region 111534
Tssr111535 11 109362534 to 109362604 70 - TSS region transcription start site region 111535
Tssr105642 11 109362706 to 109362739 33 + TSS region transcription start site region 105642
Tssr105643 11 109362771 to 109362854 83 + TSS region transcription start site region 105643
Gna13 11 109362831 to 109401369 38538 + protein coding gene guanine nucleotide binding protein, alpha 13
Tssr105644 11 109362855 to 109362868 13 + TSS region transcription start site region 105644
Tssr105645 11 109362873 to 109362878 5 + TSS region transcription start site region 105645
Tssr105646 11 109362883 to 109362907 24 + TSS region transcription start site region 105646
Tssr105647 11 109362926 to 109362977 51 + TSS region transcription start site region 105647
Tssr105648 11 109363064 to 109363076 12 + TSS region transcription start site region 105648
Tssr111536 11 109363181 to 109363213 32 - TSS region transcription start site region 111536
Tssr105649 11 109363782 to 109363786 4 + TSS region transcription start site region 105649
Tssr105650 11 109365030 to 109365061 31 + TSS region transcription start site region 105650
Tssr105651 11 109365062 to 109365063 1 + TSS region transcription start site region 105651
Tssr105652 11 109365082 to 109365088 6 + TSS region transcription start site region 105652
Tssr105653 11 109365098 to 109365154 56 + TSS region transcription start site region 105653
Tssr105654 11 109365174 to 109365191 17 + TSS region transcription start site region 105654
Tssr105655 11 109365503 to 109365514 11 + TSS region transcription start site region 105655
Tssr111537 11 109366977 to 109367012 35 - TSS region transcription start site region 111537
Tssr105656 11 109386558 to 109386588 30 + TSS region transcription start site region 105656
Tssr105657 11 109394227 to 109394234 7 + TSS region transcription start site region 105657
Tssr105658 11 109397276 to 109397286 10 + TSS region transcription start site region 105658
Tssr105659 11 109397376 to 109397400 24 + TSS region transcription start site region 105659
Tssr105660 11 109397428 to 109397482 54 + TSS region transcription start site region 105660
Tssr105661 11 109397540 to 109397639 99 + TSS region transcription start site region 105661
Tssr105662 11 109397642 to 109397664 22 + TSS region transcription start site region 105662
Tssr105663 11 109398860 to 109398891 31 + TSS region transcription start site region 105663
Tssr105664 11 109399037 to 109399057 20 + TSS region transcription start site region 105664
Tssr105665 11 109399341 to 109399369 28 + TSS region transcription start site region 105665
Tssr105666 11 109399484 to 109399515 31 + TSS region transcription start site region 105666
Tssr105667 11 109400821 to 109400840 19 + TSS region transcription start site region 105667
Tssr105668 11 109413909 to 109413927 18 + TSS region transcription start site region 105668
9930022D16Rik 11 109413917 to 109420405 6488 + protein coding gene RIKEN cDNA 9930022D16 gene
Tssr111538 11 109414861 to 109414872 11 - TSS region transcription start site region 111538
Tssr111539 11 109420634 to 109420646 12 - TSS region transcription start site region 111539
Cpgi4054 11 109425428 to 109426449 1021 CpG island CpG island 4054
Tssr105669 11 109425580 to 109425600 20 + TSS region transcription start site region 105669
Tssr105670 11 109425608 to 109425622 14 + TSS region transcription start site region 105670
Tssr105671 11 109425664 to 109425677 13 + TSS region transcription start site region 105671
Tssr111540 11 109425760 to 109425770 10 - TSS region transcription start site region 111540
Tssr105672 11 109425940 to 109425952 12 + TSS region transcription start site region 105672
Amz2 11 109425946 to 109452813 26867 + protein coding gene archaelysin family metallopeptidase 2
Tssr105673 11 109425967 to 109426010 43 + TSS region transcription start site region 105673
Tssr105674 11 109426154 to 109426222 68 + TSS region transcription start site region 105674
Tssr105675 11 109426223 to 109426255 32 + TSS region transcription start site region 105675
Tssr105676 11 109426372 to 109426389 17 + TSS region transcription start site region 105676
Tssr3712 11 109427017 to 109427027 10 + TSS region transcription start site region 3712
Tssr105677 11 109432711 to 109432730 19 + TSS region transcription start site region 105677
Gm15642 11 109437172 to 109438145 973 - antisense lncRNA gene predicted gene 15642
Cpgi4055 11 109439944 to 109440354 410 CpG island CpG island 4055
Tssr105678 11 109440072 to 109440079 7 + TSS region transcription start site region 105678
Gm45916 11 109440078 to 109453359 13281 + lncRNA gene predicted gene, 45916
Tssr105679 11 109440097 to 109440173 76 + TSS region transcription start site region 105679
Slc16a6 11 109450855 to 109473596 22741 - protein coding gene solute carrier family 16 (monocarboxylic acid transporters), member 6
Tssr105680 11 109452731 to 109452749 18 + TSS region transcription start site region 105680
Tssr111541 11 109452867 to 109452885 18 - TSS region transcription start site region 111541
Tssr111542 11 109453072 to 109453082 10 - TSS region transcription start site region 111542
Cpgi4056 11 109454953 to 109455309 356 CpG island CpG island 4056
Gm25540 11 109466311 to 109466431 120 - miRNA gene predicted gene, 25540
Cpgi4057 11 109472100 to 109472772 672 CpG island CpG island 4057
Tssr105681 11 109472236 to 109472247 11 + TSS region transcription start site region 105681
Tssr111543 11 109472580 to 109472591 11 - TSS region transcription start site region 111543
Tssr111544 11 109472611 to 109472639 28 - TSS region transcription start site region 111544
Tssr111545 11 109472972 to 109472991 19 - TSS region transcription start site region 111545
Cpgi4058 11 109472981 to 109474312 1331 CpG island CpG island 4058
Tssr111546 11 109473036 to 109473050 14 - TSS region transcription start site region 111546
Tssr111547 11 109473065 to 109473079 14 - TSS region transcription start site region 111547
Tssr111548 11 109473093 to 109473112 19 - TSS region transcription start site region 111548
Tssr111549 11 109473133 to 109473153 20 - TSS region transcription start site region 111549
Tssr111550 11 109473220 to 109473278 58 - TSS region transcription start site region 111550
Arsg 11 109473374 to 109573330 99956 + protein coding gene arylsulfatase G
Tssr111551 11 109473656 to 109473666 10 - TSS region transcription start site region 111551
Tssr111552 11 109473735 to 109473746 11 - TSS region transcription start site region 111552
Tssr111553 11 109473761 to 109473785 24 - TSS region transcription start site region 111553
Tssr105682 11 109485631 to 109485713 82 + TSS region transcription start site region 105682