Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:108307704-109187706

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83 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Prkca 11 107933387 to 108343888 410501 - protein coding gene protein kinase C, alpha
Tssr111504 11 108321584 to 108321588 4 - TSS region transcription start site region 111504
Cpgi4045 11 108342835 to 108344435 1600 CpG island CpG island 4045
Tssr111505 11 108343549 to 108343568 19 - TSS region transcription start site region 111505
Tssr111506 11 108343855 to 108343866 11 - TSS region transcription start site region 111506
Tssr111507 11 108343879 to 108343897 18 - TSS region transcription start site region 111507
Tssr111508 11 108343917 to 108343941 24 - TSS region transcription start site region 111508
Tssr111509 11 108343944 to 108343954 10 - TSS region transcription start site region 111509
Tssr111510 11 108344090 to 108344104 14 - TSS region transcription start site region 111510
Tssr111511 11 108344119 to 108344180 61 - TSS region transcription start site region 111511
Gm46297 11 108344359 to 108349578 5219 + lncRNA gene predicted gene, 46297
Gm36709 11 108366827 to 108381121 14294 - lncRNA gene predicted gene, 36709
Gm11656 11 108377877 to 108381093 3216 + sense intronic lncRNA gene predicted gene 11656
Tssr105601 11 108381166 to 108381171 5 + TSS region transcription start site region 105601
Tssr105602 11 108381195 to 108381202 7 + TSS region transcription start site region 105602
Tssr105603 11 108381204 to 108381229 25 + TSS region transcription start site region 105603
Tssr105604 11 108395288 to 108395324 36 + TSS region transcription start site region 105604
Apoh 11 108395297 to 108414396 19099 + protein coding gene apolipoprotein H
Tssr105605 11 108395876 to 108395898 22 + TSS region transcription start site region 105605
Tssr105606 11 108395926 to 108395951 25 + TSS region transcription start site region 105606
Tssr105607 11 108404813 to 108404828 15 + TSS region transcription start site region 105607
Tssr105608 11 108407280 to 108407307 27 + TSS region transcription start site region 105608
Gm11667 11 108423273 to 108423758 485 + pseudogene predicted gene 11667
Cpgi4046 11 108424909 to 108425913 1004 CpG island CpG island 4046
Tssr111512 11 108424981 to 108424998 17 - TSS region transcription start site region 111512
Cep112 11 108425192 to 108860615 435423 + protein coding gene centrosomal protein 112
Tssr105609 11 108425242 to 108425304 62 + TSS region transcription start site region 105609
D11Mit224 11 108482862 to 108483011 149 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 224
Cep112os1 11 108529097 to 108533664 4567 - antisense lncRNA gene centrosomal protein 112, opposite strand 1
Tssr111513 11 108533654 to 108533679 25 - TSS region transcription start site region 111513
Tssr111514 11 108533694 to 108533697 3 - TSS region transcription start site region 111514
Tssr105610 11 108587092 to 108587110 18 + TSS region transcription start site region 105610
Tssr105611 11 108587131 to 108587136 5 + TSS region transcription start site region 105611
Tssr105612 11 108606247 to 108606278 31 + TSS region transcription start site region 105612
Tssr105613 11 108637404 to 108637415 11 + TSS region transcription start site region 105613
Tssr105614 11 108682614 to 108682639 25 + TSS region transcription start site region 105614
Tssr105615 11 108682643 to 108682652 9 + TSS region transcription start site region 105615
Olfr1397-ps1 11 108687077 to 108688035 958 - pseudogene olfactory receptor 1397, pseudogene 1
Ath19 11 108713782 to 108713906 124 QTL atherosclerosis 19
D11Mit333 11 108713782 to 108713906 124 DNA segment DNA Segment, Chr 11, Massachusetts Institute of Technology 333
Pkccl 11 108713782 to 108713906 124 QTL protein kinase C content in lungs
Rpl23a-ps14 11 108716483 to 108716906 423 + pseudogene ribosomal protein L23A, pseudogene 14
Tssr105616 11 108747704 to 108747706 2 + TSS region transcription start site region 105616
Cep112it 11 108820333 to 108826942 6609 + sense intronic lncRNA gene centrosomal protein 112, intronic transcript
Gm36818 11 108826689 to 108855767 29078 - lncRNA gene predicted gene, 36818
Gm46298 11 108864079 to 108912539 48460 - lncRNA gene predicted gene, 46298
D11Mit161 11 108915424 to 108915558 134 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 161
Pas5b 11 108915558 to 96285639 -12629919 QTL pulmonary adenoma susceptibility 5b
Cpgi4047 11 108920119 to 108922176 2057 CpG island CpG island 4047
Tssr105617 11 108920342 to 108920358 16 + TSS region transcription start site region 105617
Axin2 11 108920349 to 108950783 30434 + protein coding gene axin 2
Tssr105618 11 108920371 to 108920384 13 + TSS region transcription start site region 105618
Tssr105619 11 108920399 to 108920493 94 + TSS region transcription start site region 105619
Tssr105620 11 108920499 to 108920510 11 + TSS region transcription start site region 105620
Tssr105621 11 108920811 to 108920841 30 + TSS region transcription start site region 105621
Tssr105622 11 108920843 to 108920856 13 + TSS region transcription start site region 105622
Tssr105623 11 108921129 to 108921146 17 + TSS region transcription start site region 105623
Tssr105624 11 108921670 to 108921684 14 + TSS region transcription start site region 105624
Cpgi4048 11 108922476 to 108922908 432 CpG island CpG island 4048
Tssr105625 11 108923277 to 108923286 9 + TSS region transcription start site region 105625
Tssr3710 11 108936694 to 108936695 1 + TSS region transcription start site region 3710
Gm11670 11 108939310 to 108942015 2705 - antisense lncRNA gene predicted gene 11670
Tssr105626 11 108941567 to 108941571 4 + TSS region transcription start site region 105626
Gm36876 11 108981494 to 109034783 53289 + lncRNA gene predicted gene, 36876
Gm11668 11 109007651 to 109008781 1130 + pseudogene predicted gene 11668
Cpgi4049 11 109011642 to 109012316 674 CpG island CpG island 4049
Tssr111515 11 109011705 to 109011732 27 - TSS region transcription start site region 111515
Tssr105627 11 109011715 to 109011755 40 + TSS region transcription start site region 105627
Tssr111516 11 109011771 to 109011782 11 - TSS region transcription start site region 111516
Tssr105628 11 109011815 to 109011826 11 + TSS region transcription start site region 105628
Tssr105629 11 109011831 to 109011859 28 + TSS region transcription start site region 105629
Tssr111517 11 109011840 to 109011853 13 - TSS region transcription start site region 111517
Tssr111518 11 109011860 to 109011871 11 - TSS region transcription start site region 111518
Tssr105630 11 109011869 to 109011906 37 + TSS region transcription start site region 105630
Tssr111519 11 109011873 to 109011882 9 - TSS region transcription start site region 111519
Tssr111520 11 109011903 to 109011940 37 - TSS region transcription start site region 111520
Tssr105631 11 109011986 to 109011994 8 + TSS region transcription start site region 105631
Tssr111521 11 109011988 to 109012000 12 - TSS region transcription start site region 111521
Gm24149 11 109066984 to 109067090 106 - snRNA gene predicted gene, 24149
Tssr111522 11 109102708 to 109102750 42 - TSS region transcription start site region 111522
E030025P04Rik 11 109139291 to 109144369 5078 - protein coding gene RIKEN cDNA E030025P04 gene
Tssr111523 11 109144340 to 109144377 37 - TSS region transcription start site region 111523
Gm11658 11 109159187 to 109160194 1007 - pseudogene predicted gene 11658