Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:108299909-108550913

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31 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Prkca 11 107933387 to 108343888 410501 - protein coding gene protein kinase C, alpha
Tssr111504 11 108321584 to 108321588 4 - TSS region transcription start site region 111504
Cpgi4045 11 108342835 to 108344435 1600 CpG island CpG island 4045
Tssr111505 11 108343549 to 108343568 19 - TSS region transcription start site region 111505
Tssr111506 11 108343855 to 108343866 11 - TSS region transcription start site region 111506
Tssr111507 11 108343879 to 108343897 18 - TSS region transcription start site region 111507
Tssr111508 11 108343917 to 108343941 24 - TSS region transcription start site region 111508
Tssr111509 11 108343944 to 108343954 10 - TSS region transcription start site region 111509
Tssr111510 11 108344090 to 108344104 14 - TSS region transcription start site region 111510
Tssr111511 11 108344119 to 108344180 61 - TSS region transcription start site region 111511
Gm46297 11 108344359 to 108349578 5219 + lncRNA gene predicted gene, 46297
Gm36709 11 108366827 to 108381121 14294 - lncRNA gene predicted gene, 36709
Gm11656 11 108377877 to 108381093 3216 + sense intronic lncRNA gene predicted gene 11656
Tssr105601 11 108381166 to 108381171 5 + TSS region transcription start site region 105601
Tssr105602 11 108381195 to 108381202 7 + TSS region transcription start site region 105602
Tssr105603 11 108381204 to 108381229 25 + TSS region transcription start site region 105603
Tssr105604 11 108395288 to 108395324 36 + TSS region transcription start site region 105604
Apoh 11 108395297 to 108414396 19099 + protein coding gene apolipoprotein H
Tssr105605 11 108395876 to 108395898 22 + TSS region transcription start site region 105605
Tssr105606 11 108395926 to 108395951 25 + TSS region transcription start site region 105606
Tssr105607 11 108404813 to 108404828 15 + TSS region transcription start site region 105607
Tssr105608 11 108407280 to 108407307 27 + TSS region transcription start site region 105608
Gm11667 11 108423273 to 108423758 485 + pseudogene predicted gene 11667
Cpgi4046 11 108424909 to 108425913 1004 CpG island CpG island 4046
Tssr111512 11 108424981 to 108424998 17 - TSS region transcription start site region 111512
Cep112 11 108425192 to 108860615 435423 + protein coding gene centrosomal protein 112
Tssr105609 11 108425242 to 108425304 62 + TSS region transcription start site region 105609
D11Mit224 11 108482862 to 108483011 149 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 224
Cep112os1 11 108529097 to 108533664 4567 - antisense lncRNA gene centrosomal protein 112, opposite strand 1
Tssr111513 11 108533654 to 108533679 25 - TSS region transcription start site region 111513
Tssr111514 11 108533694 to 108533697 3 - TSS region transcription start site region 111514