Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:107969909-108880913

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70 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Prkca 11 107933387 to 108343888 410501 - protein coding gene protein kinase C, alpha
Gm10838 11 107966616 to 107970866 4250 unclassified gene predicted gene 10838
Tssr105597 11 107993983 to 107993992 9 + TSS region transcription start site region 105597
Tssr105598 11 107994006 to 107994025 19 + TSS region transcription start site region 105598
Gm11657 11 107994022 to 107994631 609 + antisense lncRNA gene predicted gene 11657
Tssr105599 11 107995405 to 107995411 6 + TSS region transcription start site region 105599
Mir7223 11 107996848 to 107996916 68 + miRNA gene microRNA 7223
Cpgi4044 11 108023124 to 108023462 338 CpG island CpG island 4044
Tssr111491 11 108044678 to 108044683 5 - TSS region transcription start site region 111491
Tssr105600 11 108062349 to 108062351 2 + TSS region transcription start site region 105600
Tssr3708 11 108181832 to 108181865 33 + TSS region transcription start site region 3708
Gm11655 11 108181850 to 108194126 12276 + antisense lncRNA gene predicted gene 11655
Tssr3709 11 108186823 to 108186837 14 + TSS region transcription start site region 3709
Tssr111492 11 108227006 to 108227011 5 - TSS region transcription start site region 111492
Tssr111493 11 108241028 to 108241048 20 - TSS region transcription start site region 111493
Tssr111494 11 108249047 to 108249050 3 - TSS region transcription start site region 111494
Tssr111495 11 108261244 to 108261252 8 - TSS region transcription start site region 111495
Tssr111496 11 108262684 to 108262703 19 - TSS region transcription start site region 111496
Tssr111497 11 108262841 to 108262852 11 - TSS region transcription start site region 111497
Tssr111498 11 108270515 to 108270587 72 - TSS region transcription start site region 111498
Tssr111499 11 108272306 to 108272310 4 - TSS region transcription start site region 111499
Tssr111500 11 108273685 to 108273727 42 - TSS region transcription start site region 111500
Tssr111501 11 108273784 to 108273789 5 - TSS region transcription start site region 111501
Tssr111502 11 108290168 to 108290172 4 - TSS region transcription start site region 111502
Tssr111503 11 108295800 to 108295803 3 - TSS region transcription start site region 111503
Tssr111504 11 108321584 to 108321588 4 - TSS region transcription start site region 111504
Cpgi4045 11 108342835 to 108344435 1600 CpG island CpG island 4045
Tssr111505 11 108343549 to 108343568 19 - TSS region transcription start site region 111505
Tssr111506 11 108343855 to 108343866 11 - TSS region transcription start site region 111506
Tssr111507 11 108343879 to 108343897 18 - TSS region transcription start site region 111507
Tssr111508 11 108343917 to 108343941 24 - TSS region transcription start site region 111508
Tssr111509 11 108343944 to 108343954 10 - TSS region transcription start site region 111509
Tssr111510 11 108344090 to 108344104 14 - TSS region transcription start site region 111510
Tssr111511 11 108344119 to 108344180 61 - TSS region transcription start site region 111511
Gm46297 11 108344359 to 108349578 5219 + lncRNA gene predicted gene, 46297
Gm36709 11 108366827 to 108381121 14294 - lncRNA gene predicted gene, 36709
Gm11656 11 108377877 to 108381093 3216 + sense intronic lncRNA gene predicted gene 11656
Tssr105601 11 108381166 to 108381171 5 + TSS region transcription start site region 105601
Tssr105602 11 108381195 to 108381202 7 + TSS region transcription start site region 105602
Tssr105603 11 108381204 to 108381229 25 + TSS region transcription start site region 105603
Tssr105604 11 108395288 to 108395324 36 + TSS region transcription start site region 105604
Apoh 11 108395297 to 108414396 19099 + protein coding gene apolipoprotein H
Tssr105605 11 108395876 to 108395898 22 + TSS region transcription start site region 105605
Tssr105606 11 108395926 to 108395951 25 + TSS region transcription start site region 105606
Tssr105607 11 108404813 to 108404828 15 + TSS region transcription start site region 105607
Tssr105608 11 108407280 to 108407307 27 + TSS region transcription start site region 105608
Gm11667 11 108423273 to 108423758 485 + pseudogene predicted gene 11667
Cpgi4046 11 108424909 to 108425913 1004 CpG island CpG island 4046
Tssr111512 11 108424981 to 108424998 17 - TSS region transcription start site region 111512
Cep112 11 108425192 to 108860615 435423 + protein coding gene centrosomal protein 112
Tssr105609 11 108425242 to 108425304 62 + TSS region transcription start site region 105609
D11Mit224 11 108482862 to 108483011 149 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 224
Cep112os1 11 108529097 to 108533664 4567 - antisense lncRNA gene centrosomal protein 112, opposite strand 1
Tssr111513 11 108533654 to 108533679 25 - TSS region transcription start site region 111513
Tssr111514 11 108533694 to 108533697 3 - TSS region transcription start site region 111514
Tssr105610 11 108587092 to 108587110 18 + TSS region transcription start site region 105610
Tssr105611 11 108587131 to 108587136 5 + TSS region transcription start site region 105611
Tssr105612 11 108606247 to 108606278 31 + TSS region transcription start site region 105612
Tssr105613 11 108637404 to 108637415 11 + TSS region transcription start site region 105613
Tssr105614 11 108682614 to 108682639 25 + TSS region transcription start site region 105614
Tssr105615 11 108682643 to 108682652 9 + TSS region transcription start site region 105615
Olfr1397-ps1 11 108687077 to 108688035 958 - pseudogene olfactory receptor 1397, pseudogene 1
Ath19 11 108713782 to 108713906 124 QTL atherosclerosis 19
D11Mit333 11 108713782 to 108713906 124 DNA segment DNA Segment, Chr 11, Massachusetts Institute of Technology 333
Pkccl 11 108713782 to 108713906 124 QTL protein kinase C content in lungs
Rpl23a-ps14 11 108716483 to 108716906 423 + pseudogene ribosomal protein L23A, pseudogene 14
Tssr105616 11 108747704 to 108747706 2 + TSS region transcription start site region 105616
Cep112it 11 108820333 to 108826942 6609 + sense intronic lncRNA gene centrosomal protein 112, intronic transcript
Gm36818 11 108826689 to 108855767 29078 - lncRNA gene predicted gene, 36818
Gm46298 11 108864079 to 108912539 48460 - lncRNA gene predicted gene, 46298