Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:107492930-107748826

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33 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Psmd12 11 107479528 to 107498036 18508 + protein coding gene proteasome (prosome, macropain) 26S subunit, non-ATPase, 12
C330019F10Rik 11 107511403 to 107527220 15817 - lincRNA gene RIKEN cDNA C330019F10 gene
A830035A12Rik 11 107526506 to 107534143 7637 - unclassified non-coding RNA gene RIKEN cDNA A830035A12 gene
Gm11649 11 107531931 to 107532305 374 - pseudogene predicted gene 11649
Gm39426 11 107545392 to 107547289 1897 - lncRNA gene predicted gene, 39426
Cpgi4039 11 107546704 to 107548710 2006 CpG island CpG island 4039
Tssr105590 11 107546846 to 107546890 44 + TSS region transcription start site region 105590
Tssr105591 11 107546902 to 107546923 21 + TSS region transcription start site region 105591
Tssr105592 11 107546932 to 107546976 44 + TSS region transcription start site region 105592
Tssr105593 11 107547925 to 107547959 34 + TSS region transcription start site region 105593
Helz 11 107547930 to 107693826 145896 + protein coding gene helicase with zinc finger domain
Tssr105594 11 107548835 to 107548841 6 + TSS region transcription start site region 105594
Tssr111472 11 107574522 to 107574523 1 - TSS region transcription start site region 111472
Tssr105595 11 107593823 to 107593826 3 + TSS region transcription start site region 105595
Mir6932 11 107637722 to 107637779 57 + miRNA gene microRNA 6932
Cpgi4040 11 107686491 to 107686700 209 CpG island CpG island 4040
Cacng1 11 107703218 to 107716476 13258 - protein coding gene calcium channel, voltage-dependent, gamma subunit 1
Cpgi4041 11 107703746 to 107703902 156 CpG island CpG island 4041
Tssr111473 11 107716413 to 107716420 7 - TSS region transcription start site region 111473
Tssr111474 11 107716431 to 107716447 16 - TSS region transcription start site region 111474
Tssr111475 11 107716450 to 107716453 3 - TSS region transcription start site region 111475
Tssr111476 11 107716456 to 107716514 58 - TSS region transcription start site region 111476
Tssr111477 11 107716517 to 107716528 11 - TSS region transcription start site region 111477
Tssr111478 11 107716544 to 107716557 13 - TSS region transcription start site region 111478
Tssr111479 11 107716571 to 107716582 11 - TSS region transcription start site region 111479
D11Mit258 11 107725518 to 107725646 128 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 258
Hmtb6 11 107725518 to 110629004 2903486 QTL hemostasis and thrombosis rebleeding time 6
Lore4 11 107725646 to 79265183 -28460463 QTL loss of righting induced by ethanol 4
Tssr111480 11 107733666 to 107733683 17 - TSS region transcription start site region 111480
Tssr111481 11 107733943 to 107733971 28 - TSS region transcription start site region 111481
Tssr111482 11 107734017 to 107734040 23 - TSS region transcription start site region 111482
Tssr111483 11 107734050 to 107734059 9 - TSS region transcription start site region 111483
Cacng4 11 107734780 to 107794464 59684 - protein coding gene calcium channel, voltage-dependent, gamma subunit 4